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Carg17541 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTATGCGCTTCGAAAACTGTTTAATTCTTATGAAATTGACTGGAAACAGTAGGACGAGTATAGTTTTTGTAGAGTTTTTTAGTTTTGAGGAGTTGCGATCATCAATTTTCTTTGATTGTACTTTCCATCTGGCTGGAGTTTAATCTTGTTCGTCCGAAGAACAAGATTGTCAAGACGGTTTTATCGCTGTTCAAACTTCTAAAGTCCTCTTACTGAGTCCTTTATTTGTTGGAGGTGAAACCAGGCTAACTGAAAGTTGTTAGACGAACACGACCCTCCACAGTGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGAGCTTCTCCAGAAGGCCTCATACCAATGGAGAGAGTATTCTTTGATTATAAACCCAGGATCATTCCCTGAATTAGCCGATGTGGGGACTTTCATCATCCAACACCTCGCCTCGAACAACGTACGCCTCCCCTTAATCGAGGCTCGACTCCTTTTTCTTTTGGAGTCTTAGTCATTTTTTACTATGCCTTCGAGGAGGCTCAACTTCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGACTCTGATACCATGTTAGACGAATACGACTCTCCACAATGGTATGATGTTGTCCACTTTGAGCATAAGCTCTCATGAGTTTGCTTTGGGCTTCCCCAAAAGGCCTTATACCAATGGAGAGAGTATTCTTTGATTATAAACTCATGATCATTCCTTAAATTAGCCGATGTGGGACTTTCATCATCCAACACCTCCTCTCGAACAAAGTACACCTTCTCTTAACCGAGGCTCGACTCTTTTTTCTTTTGGAGTCTTAGTCATTTTTTACCATGCCTTCGAGGAGGCTCGACTCCTTTTCTTTTGGAGTTCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGCTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATGTTGTCCACTTTAAGCATAAGCTCTCATGGGTTTGCTTTGGGCTTCCCCAAAAGGCCTTATACCAATGGAGAGGGTATTCTTTGATTATAAACTCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCATCCAACACCTCCCCTCGAACGAGGCTCGACTCCTTTTTTCTTTTGGAGTCTTAGTCATTTTTTACTATGCTTTCGAGGAGGCTCAACTCCTTTTCTTTTGGAGTCCTCTGTTCGACATTTGAAGATTTACCAATCTATTGGCACGACTAAGTTTTAGGGCATGACTCTGATACTATGTTAGACGAACACGATTCTCCACAATGGTATGATGTTGTCCACTTTAAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCCTACCAATGGAGAGAGTATTATTTGATTATAAACCCATGATCATTCCCTAAATTAGTCGATGTGGGACTTTCATCATCCAACACCTCTCCTCGAACAAAGTACGTCTCCCATTAATCGAGGCTCGACTCCTTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTTAGGGCATGACTCTGATACCATGTTAGATGACAAACACGATTTTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGAAGAGAGTATTCTTTGTTCGTAGTTTTTTTTCCCAGCTCCCTAATCCTCGTAAATTGTAAAATATCAATCTAGAAGGATCAAGTATAATTGTTGAGATCAACCTTTTTGATATTGTTCACGATGGCTATGGACTCTGGTGTAATTTATTTCACAAATATACTGTTCTTTTCTTGTATTGATTTCGCAAACATATTGTTATCGATGGTTATAGACTTTGGTACGTCGATTTTGTAAATGTATTGTTCTTGATGGCTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTTTTGATGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTTCTTGATGGTTACTTTTGATGTTCGATTTCGTAAATGTATTTTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTTGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGGTTTCGTAAATGTATTGTTCTTGATGGTTAAGACTTTGGTGTGTTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTTGTGTGTCGATTTCGTAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGGTGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCAATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGCGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATTTATTGTTCTTGATGGTTACAAACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACAGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGGTGGTTACCGACTTTGGTGTGTCGATTTCGTAAATGTATTGTTCTTGATGGTTATAGACTTTGGTGTGTTGATTTCGTAAATGTATTGTTCTCGATGGTTATGGACCTTGTTGTTTTGATCTCGTAAATACACTGTTCTCGTAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG ATGGGGTGCTGTTGCGACGAAGATGACGACGTTGAGATCCTGAGGCATCTTCATCCCTCACCGACCGTTCAGTCTCCGCCGCAGCAGCAGCCTACGCTACCGGATTCTTCCACTGCCGTTCTGTCTCCGATGAACTCTCACTTCTTCGCCCTCTCATGCCGCGACATCCTTCGCCTCATCTTTGAGAAGCTTTCCATCCCCGATTTGGCTCGTTCCAGCTGCGTTTCCCGTCTCTGGAACTCTGTTGCTTCCGATCAGGAAATTGTTTCCGGTGCTTTCAAAGCGCCGTGGAAGGTGAAGGATGTAATAGGGAAGCCGAGCTCCGGGAGCTTCTGGAGAGATAATTGTCTTGGAAAGTTTGCGATCTCTCATCGGATTCTCCGCGGCGATAGCTTGGCTAGTCTTGCCGTTAAGTATTCGGTTCAGGTCATAGACATAAAACGTCTAAACAACATGATGAGCGACCATGGCATATACTCAAGAGAAAGGTTGCTAATCCCCATTGGCAATCCCAACATACTTATAAACAGTATATGCTACATCGAGATGGACGCTATCGCGAAACGGGAAGTTGCAACGTTGTATTTAGATGGCATCCCCACGACCCATCATTTGTATGGTAGGGAGACGAATGATCAGGGTATGTCCTCTGTTCAAGTGAAGAAACGAGTACTCCATTCGTTGAGTCGGAGCATGATGGTCGACGACGAAACCGCTCAATATTACTTATCCATTTCCGATGGCGATCCTCGAGCTGCTCTCACAGAATTCGCCGAAGACATCAGGTGGGAGAGGCATATGGGCATGGCCTAG MGCCCDEDDDVEILRHLHPSPTVQSPPQQQPTLPDSSTAVLSPMNSHFFALSCRDILRLIFEKLSIPDLARSSCVSRLWNSVASDQEIVSGAFKAPWKVKDVIGKPSSGSFWRDNCLGKFAISHRILRGDSLASLAVKYSVQVIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTTHHLYGRETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIRWERHMGMA Homology
BLAST of Carg17541 vs. NCBI nr
Match: KAG6586259.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021103.1 F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 548.1 bits (1411), Expect = 4.2e-152 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
BLAST of Carg17541 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata]) HSP 1 Score: 547.0 bits (1408), Expect = 9.3e-152 Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0
BLAST of Carg17541 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima]) HSP 1 Score: 541.6 bits (1394), Expect = 3.9e-150 Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0
BLAST of Carg17541 vs. NCBI nr
Match: XP_023537183.1 (F-box protein At1g55000 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 537.3 bits (1383), Expect = 7.4e-149 Identity = 267/274 (97.45%), Postives = 269/274 (98.18%), Query Frame = 0
BLAST of Carg17541 vs. NCBI nr
Match: XP_004139174.1 (F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_023439 [Cucumis sativus]) HSP 1 Score: 482.3 bits (1240), Expect = 2.8e-132 Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy Swiss-Prot
Match: Q9FZ32 (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 3.9e-76 Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy Swiss-Prot
Match: Q5HZA4 (LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Lysmd1 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 6.8e-04 Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1FH66 (F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1) HSP 1 Score: 547.0 bits (1408), Expect = 4.5e-152 Identity = 269/270 (99.63%), Postives = 270/270 (100.00%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1HS58 (F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1) HSP 1 Score: 541.6 bits (1394), Expect = 1.9e-150 Identity = 266/270 (98.52%), Postives = 269/270 (99.63%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A0A0LFS6 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.4e-132 Identity = 238/270 (88.15%), Postives = 251/270 (92.96%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A6J1D9A3 (F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 2.3e-132 Identity = 240/270 (88.89%), Postives = 251/270 (92.96%), Query Frame = 0
BLAST of Carg17541 vs. ExPASy TrEMBL
Match: A0A5A7TYE5 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00510 PE=3 SV=1) HSP 1 Score: 392.9 bits (1008), Expect = 1.1e-105 Identity = 194/219 (88.58%), Postives = 203/219 (92.69%), Query Frame = 0
BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77 Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0
BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77 Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0
BLAST of Carg17541 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 286.2 bits (731), Expect = 2.8e-77 Identity = 136/220 (61.82%), Postives = 174/220 (79.09%), Query Frame = 0
BLAST of Carg17541 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 52.0 bits (123), Expect = 8.8e-07 Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of Carg17541 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 48.9 bits (115), Expect = 7.4e-06 Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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