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Carg17538 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGGTCAGTAAGTTCTGCAACATACAATTTTTTATTTTTGGATATATTTTGTTTGTTCAGCGTTTAATTAATTAAAAATAATAATTTATTTTCAAATTTGTCAAAATTTTATCAATTTTTACTTCAAATTTTATAGTACAAAATTTATAAAATTAGAAAGAACCACAGCATTAAAAAGAAAAACCCGTTACCACTAGTCACGCGTTTTAAAGCCTTGAAGGGAAGCTGAAAGTTTTAAAGATTTGAGGGGAAGCCTGAAAGGTAAAGTCCAAAGAGAACACTATCTGCTAGCGGTGGATCCAGGCCGTTACAAATGGTATCAGAGCTAGACACCGGATGATGTGTCAGCCTTCTCGCTGTTCCTCGAAGGGGGGTAGCCAGCCTTCTCGCTGTTCCTCGAAGGAGGTAGACACGAGGCGGTGTGAAGGACGCTGGCCTCAAAGGGGGTGGATTTAGAGGCGGTCCCACATCGATTGGAGGAAGGAAAGAGTGCTAGCGAGGACGCTGGCCCCGAAAGTGGGTGGATTGTGATGTCTCACATTCGTTGAGAAGGAGAAAAAACCACCATTCATAAGGTTGTGGAAACCTTCCCCTAGTAGATGCCTTTTAAAGCCTTAAGGGAAAGTCCGAAAGTCCGAAAGTCAAATCTACTAGGGGTGAATAGTTGCATTTATGAATTTTGAATTTTTTTTTTAATTTTTTAATGGTTAATTTAGGCATTAACCAAACTTGACTTAGTTGAGTTAGTAGTGATTTTCATTTTTTTTTTTCACAAAATTAGTTAGTAAATTACAAAAATTGAATAAAAGATAAAAATTAAAATAATGGTAGTCTAATTTGTTTTTAAAAAATAATTTGAGGATGAAAGTTAAAAATTAAAAAAGAAAAAAAAAAAAAAAAAACTGTTAATTTTCAATAAATCTATATAATATTAATTAGTGTTTAAACTACATTTTCTGGTTTTATTGGTTTTTTTTTTTTTTTTTTTTCTCTTTAAGACATCACACTGCCTAAAATTTTCTGTTTAAAGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCGTAAGCTTACCTAACTTATCTACAATTACTTCAACATTATGATATGTCCTGTCCTAGATTTAAGATCTTTTAGAAATCCCTTAGAAGATGTTAAACACTAATGAAATATGAGGTTCGATCGATCTGAATTTACCTCACGGAAAGGAGTCGGGTTATAGGAACCTTAGGTTCATATAAACCATGACCTATGAGTTCAAGATTCATACAACTATTAGGAAGTACGAAAAATTAGCAATATAGACTTGGTTTATGCAGTCCAAATAAATGCACAACCTCGACCGACAAACTCATGTACCGAACATAAACTCGACTTCTTAAACTCGATTTGCTGTAAGCCGAACACCTCCTGAGAGACAAAAACAAGATGAAACTATATGCCTTAGGAGAAGTTCAAAATGAAATGAACCTACAGACTTGCTTCATTGAAAGGAAATTTGATTCTAAAAAGGTTTATGCTTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGGTTCTTTGGATCACAAAGAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA AAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA ATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGCAGTTCCGGCGGGGAATAGTATCGGCGCAGTCACCGTCCGAAGATCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCACTGGTGGCCGTCGGCGCTAATTTTGGCGGCGTAACGAGCTTTCTGCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAGACTCGATGTTGTTTATCCAATTGGAGGGTACAGCCGGTGCATTGATACCAATGAAGGATTTGAACATCCAGAGTTTATCTACCCAGCAAGTTGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGTTGAGAAGTCTGAATTTGAACGATCGCTCGACCCTCCACCCTTGACCAGCTCGAACATGGATCGTCGTCGTCGGAATGTTAATGAGCCACTGGTTGCATTTGGTCCACCGGGTTCGAGCGGAGAACTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTAATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGACAAGAAACGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACGTAGCGGTCTGTTTTGTTTATCAGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGAAAATTGCCAATTCCTTTTGTCTCTCAGCTTGA MAFTRCFVGGQMMQFRRGIVSAQSPSEDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSRRLRLDVVYPIGGYSRCIDTNEGFEHPEFIYPASWVGDQRLLYRAVEKSEFERSLDPPPLTSSNMDRRRRNVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSTRNVKYYELEFKVESSSFRRHNVAVCFVYQGKLYTLNAQAPESEWPGLKSEMRKIANSFCLSA Homology
BLAST of Carg17538 vs. NCBI nr
Match: KAG6586257.1 (PsbP domain-containing protein 7, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021100.1 PsbP domain-containing protein 7, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 570.9 bits (1470), Expect = 6.4e-159 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
BLAST of Carg17538 vs. NCBI nr
Match: XP_022937905.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 567.4 bits (1461), Expect = 7.0e-158 Identity = 283/285 (99.30%), Postives = 284/285 (99.65%), Query Frame = 0
BLAST of Carg17538 vs. NCBI nr
Match: XP_023537530.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537531.1 psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 559.3 bits (1440), Expect = 1.9e-155 Identity = 278/285 (97.54%), Postives = 281/285 (98.60%), Query Frame = 0
BLAST of Carg17538 vs. NCBI nr
Match: XP_022937906.1 (psbP domain-containing protein 7, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 553.9 bits (1426), Expect = 8.0e-154 Identity = 280/285 (98.25%), Postives = 281/285 (98.60%), Query Frame = 0
BLAST of Carg17538 vs. NCBI nr
Match: XP_022965873.1 (psbP domain-containing protein 7, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 549.3 bits (1414), Expect = 2.0e-152 Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy Swiss-Prot
Match: F4J7A7 (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD7 PE=2 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 4.7e-96 Identity = 177/260 (68.08%), Postives = 210/260 (80.77%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy TrEMBL
Match: A0A6J1FI47 (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444157 PE=4 SV=1) HSP 1 Score: 567.4 bits (1461), Expect = 3.4e-158 Identity = 283/285 (99.30%), Postives = 284/285 (99.65%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy TrEMBL
Match: A0A6J1FBN9 (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444157 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 3.9e-154 Identity = 280/285 (98.25%), Postives = 281/285 (98.60%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy TrEMBL
Match: A0A6J1HQ83 (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465627 PE=4 SV=1) HSP 1 Score: 549.3 bits (1414), Expect = 9.6e-153 Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy TrEMBL
Match: A0A6J1HS47 (psbP domain-containing protein 7, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465627 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 1.1e-148 Identity = 270/285 (94.74%), Postives = 274/285 (96.14%), Query Frame = 0
BLAST of Carg17538 vs. ExPASy TrEMBL
Match: A0A6J1DBK0 (psbP domain-containing protein 7, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018801 PE=4 SV=1) HSP 1 Score: 488.4 bits (1256), Expect = 2.0e-134 Identity = 242/285 (84.91%), Postives = 256/285 (89.82%), Query Frame = 0
BLAST of Carg17538 vs. TAIR 10
Match: AT3G05410.2 (Photosystem II reaction center PsbP family protein ) HSP 1 Score: 352.4 bits (903), Expect = 3.3e-97 Identity = 177/260 (68.08%), Postives = 210/260 (80.77%), Query Frame = 0
BLAST of Carg17538 vs. TAIR 10
Match: AT3G05410.1 (Photosystem II reaction center PsbP family protein ) HSP 1 Score: 214.9 bits (546), Expect = 8.2e-56 Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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