Carg17508 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17508
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nuclear pore complex protein NUP205
Location	Carg_Chr12: 11330210 .. 11330473 (-)
RNA-Seq Expression	Carg17508
Synteny	Carg17508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAAGATTGTTGGAAATAAAAGTGAGATGATTACATTGCTACTCCCTCTGGCTGAGTATGTGTTAAATGTGATGCTTATTCATTTTCAAGACAGGTGAGTTAAATGTGATATCATATGCATATACTTGGGAACAGTGTGAGGTTGAAAATGATATCTATCTATGTTTGGAGTTTGCAGCAGTGTTATTCCTGATGGGAATGCAAATATTAAAGCAATTGCATATCATGGGGAGTTGGAGTCAGGACATGAAATAAGTTCA

mRNA sequence

ATGTGCAAGATTGTTGGAAATAAAAGTGAGATGATTACATTGCTACTCCCTCTGGCTGAGTATGTGTTAAATGTGATGCTTATTCATTTTCAAGACAGCAGTGTTATTCCTGATGGGAATGCAAATATTAAAGCAATTGCATATCATGGGGAGTTGGAGTCAGGACATGAAATAAGTTCA

Coding sequence (CDS)

ATGTGCAAGATTGTTGGAAATAAAAGTGAGATGATTACATTGCTACTCCCTCTGGCTGAGTATGTGTTAAATGTGATGCTTATTCATTTTCAAGACAGCAGTGTTATTCCTGATGGGAATGCAAATATTAAAGCAATTGCATATCATGGGGAGTTGGAGTCAGGACATGAAATAAGTTCA

Protein sequence

MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS

Homology

[Close]

BLAST of Carg17508 vs. NCBI nr
Match: XP_022938218.1 (nuclear pore complex protein NUP205 isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 1838

[Close]

BLAST of Carg17508 vs. NCBI nr
Match: KAG7021250.1 (Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
          MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Sbjct: 1  MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60

[Close]

BLAST of Carg17508 vs. NCBI nr
Match: XP_023537591.1 (nuclear pore complex protein NUP205 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAI+YHGELESGHEISS
Sbjct: 1778 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAISYHGELESGHEISS 1837

[Close]

BLAST of Carg17508 vs. NCBI nr
Match: XP_022965531.1 (nuclear pore complex protein NUP205 isoform X1 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDS+VIPDGNANIKAI+YHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSTVIPDGNANIKAISYHGELESGHEISS 1838

[Close]

BLAST of Carg17508 vs. NCBI nr
Match: XP_022938219.1 (nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAIAYHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD-SVIPDGNANIKAIAYHGELESGHEISS 1837

[Close]

BLAST of Carg17508 vs. ExPASy Swiss-Prot
Match: F4KBW6 (Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana OX=3702 GN=NUP205 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV 36
            MC+IVGN+ ++ITLLL LAE+VLN++LIH QD SV
Sbjct: 1741 MCQIVGNRDQLITLLLQLAEHVLNIILIHLQDRSV 1775

[Close]

BLAST of Carg17508 vs. ExPASy TrEMBL
Match: A0A6J1FI96 (nuclear pore complex protein NUP205 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444365 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 1838

[Close]

BLAST of Carg17508 vs. ExPASy TrEMBL
Match: A0A6J1HLX9 (nuclear pore complex protein NUP205 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465407 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDS+VIPDGNANIKAI+YHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSTVIPDGNANIKAISYHGELESGHEISS 1838

[Close]

BLAST of Carg17508 vs. ExPASy TrEMBL
Match: A0A6J1FDF5 (nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444365 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAIAYHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD-SVIPDGNANIKAIAYHGELESGHEISS 1837

[Close]

BLAST of Carg17508 vs. ExPASy TrEMBL
Match: A0A6J1HKK4 (nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465407 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.7e-22
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD SVIPDGNANIKAI+YHGELESGHEISS
Sbjct: 1779 MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQD-SVIPDGNANIKAISYHGELESGHEISS 1837

[Close]

BLAST of Carg17508 vs. ExPASy TrEMBL
Match: A0A6J1CPX3 (nuclear pore complex protein NUP205 OS=Momordica charantia OX=3673 GN=LOC111013061 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSVIPDGNANIKAIAYHGELESGHEISS 60
            MCK+VGNK++MITLLLPLAEYVLNVMLIHFQDS+VIPDGNAN+KAI+YH E  S  EI+S
Sbjct: 1780 MCKVVGNKNQMITLLLPLAEYVLNVMLIHFQDSTVIPDGNANVKAISYHAESRSAQEITS 1839

[Close]

BLAST of Carg17508 vs. TAIR 10
Match: AT5G51200.1 (Protein of unknown function (DUF3414) )

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-08
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 1    MCKIVGNKSEMITLLLPLAEYVLNVMLIHFQDSSV 36
            MC+IVGN+ ++ITLLL LAE+VLN++LIH QD SV
Sbjct: 1741 MCQIVGNRDQLITLLLQLAEHVLNIILIHLQDRSV 1775

The following BLAST results are available for this feature:

BLAST of Carg17508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938218.1	4.8e-24	100.00	nuclear pore complex protein NUP205 isoform X1 [Cucurbita moschata]	[more]
KAG7021250.1	4.8e-24	100.00	Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023537591.1	1.1e-23	98.33	nuclear pore complex protein NUP205 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022965531.1	2.4e-23	96.67	nuclear pore complex protein NUP205 isoform X1 [Cucurbita maxima]	[more]
XP_022938219.1	3.4e-22	98.33	nuclear pore complex protein NUP205 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg17508 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KBW6	1.2e-06	68.57	Nuclear pore complex protein NUP205 OS=Arabidopsis thaliana OX=3702 GN=NUP205 PE...	[more]

BLAST of Carg17508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FI96	2.3e-24	100.00	nuclear pore complex protein NUP205 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HLX9	1.1e-23	96.67	nuclear pore complex protein NUP205 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FDF5	1.7e-22	98.33	nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HKK4	3.7e-22	96.67	nuclear pore complex protein NUP205 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CPX3	8.5e-19	80.00	nuclear pore complex protein NUP205 OS=Momordica charantia OX=3673 GN=LOC1110130...	[more]

BLAST of Carg17508 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51200.1	8.7e-08	68.57	Protein of unknown function (DUF3414)	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17508-RA	Carg17508-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005643	nuclear pore