Carg17496 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17496
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 11-like isoform X1
Location	Carg_Chr12: 11281187 .. 11283701 (-)
RNA-Seq Expression	Carg17496
Synteny	Carg17496

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGGTGTTTATCTCACTTCGATTCCTTTTCTGGATCTTCAATTTTTGTTGAATTGCTTATTTTGTTGCTCAATTTTGCTTTTACCGTTGAATTCTCAACTCGGATTTTGTTTTTCCTGGATTTTAGGGTTTCTTTGGTGAGAATTCACTGCTTGTTGTATCTAGGGTTTTTTCTGGAAGGTTGAATTATCGAATTTCTTGCTTAATCTATCTTTTCGCTTGGATTTCCAGTCTTCTTCGACAGAAATCTCTGGAAATTGTTGGTCTCTAGTTTCTATTTGACTTTGCTTTGACATCGCTTTGACTTCGCTATGCTGCTTCGTGATGAGTTCAATTTGTGTTATGATGATTTTTTTTTTTTTTTTTTTGCTCGAATTACTTGGAGCTGTGGACTAATTTTTGTTCCCATCTCCTTTCTGGTGTGAGAGATAGTGAGCGATTATGTTATCTGGGGAGGATTAGGGCTGCTAACATTGATAATGATGTTAATAAATAAAAATTATTGAACAGTGCGTGCTCTGCCTGGATTTGCCTTGCTCCAACAAGTGAGGATATACATGTGTGTGTGCATATTTTTCTATTCAATCAGTTGACTATATTGTGCACTCAATACCAGCTGCTGAAATTTATTTGCTTGGATTTTTCACAATTTAAATGTGAGATCTCATATTGGTCTTTATAAGAGTGTGGAAACCACTCCTTAGTAGACGCGTTTTAAAATCGTGAGACTGATAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAAATGGTATCAGAACCAAACACCAGGCGATGTGCCAGCTAGGAGAGTAAGTTTCGAAGGGGGTGGACACGAGGCGGTGGACACGAGGCGGTGTGCCGCCAAGGACGCTGGGGATCTCACATCGATTGGAGAACGGAACGAGTGTCAGTGAGGACGTTTGGCCCCAAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGAGTGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGGGGAAGCCTAAAAGGGAAAGCTCAAAGAGGACAATATCTACTTGTTGTGGGCTTGGGTTGTTATAGGAACGTCTAAGGATAACGTTTAGATGTTGGATATCTATAGTTGTTTTTATATATAAGTTGTGGTTGTGCTATGATCAAACTCGATTCTTGGCTTATAGAGCTTGTCTTTTTTTTTTTTTCTTTGGTAAGCTGTAGATGTTTGGCTCTACTATGGAAGGAGGGACATAAAAGGGGCTTATGGATTCAAGACGAAATAGAGGGGAAAATGATATTTTAGGCGTATTTTTGTCTTGAGGAACTGAAACTACTTGGGATTTTATCCTTAGATATGGTAAATTTGTCGGTGAGGTCTGGAATGGTTGACACGTTGGTTGATTTGATAGGCGTCTAATATACTTCCTTTATTGTAGGAAGGTCCCTAATGAGTTTTGTTAGTTGTACGTATGAATCAATCTGTAACTTCTGTTCTATTCTAGTATGTGTTTAAGACCTGATCCTTTTGCTTTCATGTTGCTTTCAAGTAGTTCAAAATATATATTTGTAGAAGATCGTTGGATTGGTTGTAGAGGGGGAACAAAACATTCCTTATAATGGTGTTGAAACGTCTCCCTAGCAGATGCGTTTTAAAATCGTGAGGCTGATGACGATACATAGAGGGTCAAAGTGGACAATATCTCCTAGCGGTGGGTTTGGGCGGTTACAGTGATCATATGAAATTTCCTGTCATTTTGAGTAATATCTAAATCAAAATATATTATCGTTATCAAATAAGTTCGATTGTCCAACAAAACTTGATACTTATGGAAAGAAGAGGAAGACATAAGCAAGGTGACCGGAGTGAAGTTCAACAGTTGGATGTGGGAGCCCGTCATAGTTGGTCAATGGGATAAATTAGGGAATTGGTATAGAACTAAATAGATTTGGGAAGGATGGAGGAAAGCCAAGTCGAGTGTATTGCCACCGGGAGAATTCTGGTTGGAGGCAGGGTCAACAATCTTTGGACCAGCTCCCTCTTTTATACTCTTACCTTACATTTTCTTCTAGAAACAATAGAAGTCTTTACCATGGTGGGACCAGACTAGTTCTGTGAGATCCCATATCGGTTGGAAAGGGGAATGAAGCATTCTTTATAAGGGTGTGGAAACAGACTCGTTTCAAACCTTGAGCGAAAACCCAAAAGGAAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGACTGTTACAAATGGTATCAGAGCCAGACACCGTGTGCCAGTGAGGAGGCTTAAACCCGAAGGGGGGTGGACACTAGGCAGTGTGCCAACGATGACGCTGGGCCCCGAAGGGGGGTGGATTGGGGGTCCTACATCGATCGGAGAGGGGAACAAGTGCCAGCGAGGACGCTAG

mRNA sequence

ATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGAACCAAACACCAGGCGATGTGCCAGCTAGGAGAGTAAGTTTCGAAGGGGGTGGACACGAGGCGGTGGACACGAGGCGGTGTGCCGCCAAGGACGCTGGGGATCTCACATCGATTGGAGAACGGAACGAGTGTCAAGCCAGACACCGTGTGCCAGTGAGGAGGCTTAAACCCGAAGGGGGGTGGACACTAGGCAGTGTGCCAACGATGACGCTGGGCCCCGAAGGGGGGTGGATTGGGGGTCCTACATCGATCGGAGAGGGGAACAAGTGCCAGCGAGGACGCTAG

Coding sequence (CDS)

ATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGAACCAAACACCAGGCGATGTGCCAGCTAGGAGAGTAAGTTTCGAAGGGGGTGGACACGAGGCGGTGGACACGAGGCGGTGTGCCGCCAAGGACGCTGGGGATCTCACATCGATTGGAGAACGGAACGAGTGTCAAGCCAGACACCGTGTGCCAGTGAGGAGGCTTAAACCCGAAGGGGGGTGGACACTAGGCAGTGTGCCAACGATGACGCTGGGCCCCGAAGGGGGGTGGATTGGGGGTCCTACATCGATCGGAGAGGGGAACAAGTGCCAGCGAGGACGCTAG

Protein sequence

MAESVEKDTSNEEVLSFELPAPPGWKKKNQTPGDVPARRVSFEGGGHEAVDTRRCAAKDAGDLTSIGERNECQARHRVPVRRLKPEGGWTLGSVPTMTLGPEGGWIGGPTSIGEGNKCQRGR

Homology

[Close]

BLAST of Carg17496 vs. NCBI nr
Match: KAG7021238.1 (hypothetical protein SDJN02_17926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.9 bits (655), Expect = 8.7e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAESVEKDTSNEEVLSFELPAPPGWKKKNQTPGDVPARRVSFEGGGHEAVDTRRCAAKDA 60
           MAESVEKDTSNEEVLSFELPAPPGWKKKNQTPGDVPARRVSFEGGGHEAVDTRRCAAKDA
Sbjct: 1   MAESVEKDTSNEEVLSFELPAPPGWKKKNQTPGDVPARRVSFEGGGHEAVDTRRCAAKDA 60

Query: 61  GDLTSIGERNECQARHRVPVRRLKPEGGWTLGSVPTMTLGPEGGWIGGPTSIGEGNKCQR 120
           GDLTSIGERNECQARHRVPVRRLKPEGGWTLGSVPTMTLGPEGGWIGGPTSIGEGNKCQR
Sbjct: 61  GDLTSIGERNECQARHRVPVRRLKPEGGWTLGSVPTMTLGPEGGWIGGPTSIGEGNKCQR 120

Query: 121 GR 123
           GR
Sbjct: 121 GR 122

[Close]

BLAST of Carg17496 vs. NCBI nr
Match: KAG7021001.1 (hypothetical protein SDJN02_17689, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 30  QTPGDVPARRVSFEGGGHEAVDTRRCAAKDAGD-------LTSIGERNECQARHRVPVRR 89
           ++ GDVP RR+S EG     VDTRRCA+KDAG         TSIGE N+ +A        
Sbjct: 185 ESSGDVPTRRLSPEG-----VDTRRCASKDAGSQRGWIGGSTSIGEGNDEEA-------- 244

Query: 90  LKPEGGWTLGSVPTMTLGPEGGWIGGPTSIGEGNKCQRGR 123
            +P+ GW  G V T  L PEGG +GGPTSIGEGN+CQRGR
Sbjct: 245 -EPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR 270

[Close]

BLAST of Carg17496 vs. NCBI nr
Match: XP_023537783.1 (methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDTSNEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 28

[Close]

BLAST of Carg17496 vs. NCBI nr
Match: XP_022937827.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDTSNEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 28

[Close]

BLAST of Carg17496 vs. NCBI nr
Match: XP_022965862.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDT+NEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTANEEVLSFELPAPPGWKKK 28

[Close]

BLAST of Carg17496 vs. ExPASy TrEMBL
Match: A0A6J1FCB1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDTSNEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 28

[Close]

BLAST of Carg17496 vs. ExPASy TrEMBL
Match: A0A6J1HLG2 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465620 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDT+NEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTANEEVLSFELPAPPGWKKK 28

[Close]

BLAST of Carg17496 vs. ExPASy TrEMBL
Match: A0A6J1CQ83 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111013157 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MA SV+KD++NEEV+SFELPAPPGWKKK
Sbjct: 1  MAASVQKDSANEEVVSFELPAPPGWKKK 28

The following BLAST results are available for this feature:

BLAST of Carg17496 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021238.1	8.7e-65	100.00	hypothetical protein SDJN02_17926, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7021001.1	8.3e-15	53.00	hypothetical protein SDJN02_17689, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023537783.1	1.2e-05	100.00	methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo ...	[more]
XP_022937827.1	1.2e-05	100.00	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita mosch...	[more]
XP_022965862.1	2.7e-05	96.43	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita maxim...	[more]

BLAST of Carg17496 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg17496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCB1	5.8e-06	100.00	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita mos...	[more]
A0A6J1HLG2	1.3e-05	96.43	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1CQ83	9.2e-04	82.14	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]

BLAST of Carg17496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17496-RA	Carg17496-RA	mRNA