Carg17490 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17490
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor WER-like
LocationCarg_Chr12: 11230657 .. 11231672 (-)
RNA-Seq ExpressionCarg17490
SyntenyCarg17490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTAAAAGAAAAATTACCTCACAACTATCTATTATCGATCGATATCAAATACGCACACAGACATTTCTATATCGGCTCTGATTCATCTTTCACATAACTCTAACACAGACAGTGAGACAAAGATGTCCGGTTTTTTTTTTTTTTTTTTTTTTCATTTATGTGGTGCATGTGTGTATGTGTTCCTAACCTGGTCTCTCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGGTCGGTTTGTATCGAATTAATCTCCGAAGCTTAATCAATACTTAATAGTAAAAAGAGTAAACTGACTGAATGTTTGGATATTTTGATGGTTAAACTTCTTCGATCAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAGTGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGACACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTTACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTAGGATGCAGTAGTGTTGATGCATCACTGGAGAAC

mRNA sequence

ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAGTGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGACACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTTACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTAGGATGCAGTAGTGTTGATGCATCACTGGAGAAC

Coding sequence (CDS)

ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAGTGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGACACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTTACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTAGGATGCAGTAGTGTTGATGCATCACTGGAGAAC

Protein sequence

MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKRKVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN
Homology
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BLAST of Carg17490 vs. NCBI nr
Match: KAG7021232.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 492.3 bits (1266), Expect = 2.4e-135
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 237

[Close]
BLAST of Carg17490 vs. NCBI nr
Match: KAG6586381.1 (Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 489.2 bits (1258), Expect = 2.0e-134
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQ HDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 237

[Close]
BLAST of Carg17490 vs. NCBI nr
Match: XP_022937653.1 (transcription factor WER-like [Cucurbita moschata])

HSP 1 Score: 485.7 bits (1249), Expect = 2.2e-133
Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQ HDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDITSSHYNINCPMVPANNATFNFDDEP+FNHLDPFFLIEA GCSSVDASLEN
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLEN 237

[Close]
BLAST of Carg17490 vs. NCBI nr
Match: XP_023536786.1 (transcription factor WER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 479.9 bits (1234), Expect = 1.2e-131
Identity = 231/237 (97.47%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKA KQQAKKNLWK EEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKATKQQAKKNLWKSEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWA Q HDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWAKQAHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEA GCSSVDASLEN
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEAFGCSSVDASLEN 237

[Close]
BLAST of Carg17490 vs. NCBI nr
Match: XP_022965906.1 (transcription factor WER-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 467.6 bits (1202), Expect = 6.3e-128
Identity = 227/237 (95.78%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNES+SCKK DEDDGNNKKQKKVINQTSYPQPQMCSDN ANQ HDIQRR+QEENREVTD
Sbjct: 121 KVNESNSCKKMDEDDGNNKKQKKVINQTSYPQPQMCSDNGANQAHDIQRRSQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDIT S+YNINCPMVPANNATFNFDDEPY+NHLDPFFLIEA GCSSVDASLEN
Sbjct: 181 LWNMDDIT-SYYNINCPMVPANNATFNFDDEPYYNHLDPFFLIEAFGCSSVDASLEN 236

[Close]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match: Q9LTF7 (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.3e-50
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ SGL RGGKSCRLRWKNYLRPNIKRG
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKRKVNES 126
            MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++   ES
Sbjct: 69  SMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPES 126

[Close]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match: Q9FJA2 (Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           +++  +  W   ED ILR+Y+ THGEG W+T+  ++GL R GKSCRLRWKNYLRP IKRG
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRG 70

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 114
            +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K
Sbjct: 71  NISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRK 116

[Close]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match: Q96276 (Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-38
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           + + KK LW  EED IL +YV THG+G+W  +++++GL R GKSCRLRW NYL PN+ RG
Sbjct: 9   EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKS-GLQD 119
             + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D
Sbjct: 69  NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD 120

[Close]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match: A0A4D6Q4S0 (Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-37
Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K+   +  W   ED +L++Y+ THGEG W  + + +GL R GKSCRLRW NYLRP+IKRG
Sbjct: 9   KEGLNRGAWSAREDKVLKDYINTHGEGKWRDLPRRAGLKRCGKSCRLRWLNYLRPDIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKRKVNESSS 127
            +S +EE+LIIR+HKLLGNRWSLIAGRLPGRTDNE+KNYWNT+L+K       KVN  + 
Sbjct: 69  NISYDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLSK-------KVNSQT- 128

Query: 128 CKKKDEDDGNNKKQKKVINQTSYPQPQM 156
              + E DG+    KK   +    +PQ+
Sbjct: 129 --HQHEIDGDQVPLKKTKEEEVSEKPQV 146

[Close]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match: A0A4D6Q411 (Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-37
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K+   +  W   ED IL  Y++THGEG W ++ + +GL R GKSCRLRW NYLRP IKRG
Sbjct: 9   KEGMNRGAWASMEDKILVTYIKTHGEGKWRSLPKRAGLKRCGKSCRLRWLNYLRPGIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 114
            +S++EEDLIIR+H LLGNRWSLIAGRLPGRTDNE+KNYWNT+L +
Sbjct: 69  NISEDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGR 114

[Close]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match: A0A6J1FGK0 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.1e-133
Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQ HDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDITSSHYNINCPMVPANNATFNFDDEP+FNHLDPFFLIEA GCSSVDASLEN
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLEN 237

[Close]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match: A0A6J1HMX7 (transcription factor WER-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465651 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.0e-128
Identity = 227/237 (95.78%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENREVTD 180
           KVNES+SCKK DEDDGNNKKQKKVINQTSYPQPQMCSDN ANQ HDIQRR+QEENREVTD
Sbjct: 121 KVNESNSCKKMDEDDGNNKKQKKVINQTSYPQPQMCSDNGANQAHDIQRRSQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           LWNMDDIT S+YNINCPMVPANNATFNFDDEPY+NHLDPFFLIEA GCSSVDASLEN
Sbjct: 181 LWNMDDIT-SYYNINCPMVPANNATFNFDDEPYYNHLDPFFLIEAFGCSSVDASLEN 236

[Close]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match: A0A5D3BGT2 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00730 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 206/240 (85.83%), Postives = 216/240 (90.00%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQ KKNLWKPEED ILR+YVETHGEGNWATVSQESGLMRG KSCRLRWKNYL
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQESGLMRGAKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDE---DDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENRE 180
           K N S+SCKK D+   DDGNNKKQKKVINQT YPQP +  DN A+  HDIQRRNQEENRE
Sbjct: 121 KANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRRNQEENRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
             +  NMDDITSSHYNIN PM+PANN TFNFDDEPYF+HLDPFFL EA GCSSVDASL+N
Sbjct: 181 KQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSSVDASLDN 240

[Close]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match: A0A6J1G3P0 (transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 206/240 (85.83%), Postives = 217/240 (90.42%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKD---EDDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENRE 180
           K N+S+S KK D   +DD NNKKQKKVINQT YPQP +C DN  N  HD QRRNQEE RE
Sbjct: 121 KANDSNSHKKNDDDNDDDVNNKKQKKVINQTGYPQPPICIDNGINLAHDTQRRNQEEKRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
           VT+ WNMDDITSSHYNIN P+VPAN+ATFNFDDEPYF+HLDPFFL+EA GCSSV ASL+N
Sbjct: 181 VTEPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSSVHASLDN 240

[Close]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match: A0A1S3C427 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 206/240 (85.83%), Postives = 216/240 (90.00%), Query Frame = 0 

Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQ KKNLWKPEED ILR+YVETHGEGNWATVSQESGLMRG KSCRLRWKNYL
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQESGLMRGAKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK+GLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDE---DDGNNKKQKKVINQTSYPQPQMCSDNWANQTHDIQRRNQEENRE 180
           K N S+SCKK D+   DDGNNKKQKKVINQT YPQP +  DN A+  HDIQRRNQEENRE
Sbjct: 121 KANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRRNQEENRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPYFNHLDPFFLIEALGCSSVDASLEN 238
             +  NMDDITSSHYNIN PM+PANN TFNFDDEPYF+HLDPFFL EA GCSSVDASL+N
Sbjct: 181 KQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSSVDASLDN 240

[Close]
BLAST of Carg17490 vs. TAIR 10
Match: AT5G52600.1 (myb domain protein 82 )

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-51
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ SGL RGGKSCRLRWKNYLRPNIKRG
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKRKVNES 126
            MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++   ES
Sbjct: 69  SMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPES 126

[Close]
BLAST of Carg17490 vs. TAIR 10
Match: AT5G35550.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 9.0e-40
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           +++  +  W   ED ILR+Y+ THGEG W+T+  ++GL R GKSCRLRWKNYLRP IKRG
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRG 70

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 114
            +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K
Sbjct: 71  NISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRK 116

[Close]
BLAST of Carg17490 vs. TAIR 10
Match: AT5G40330.1 (myb domain protein 23 )

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0 

Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           + + KK LW  EED IL +YV THG+G+W  +++++GL R GKSCRLRW NYL PN+ RG
Sbjct: 9   EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKS-GLQD 119
             + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D
Sbjct: 69  NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD 120

[Close]
BLAST of Carg17490 vs. TAIR 10
Match: AT3G27920.1 (myb domain protein 0 )

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-38
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 0 

Query: 9   QQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGG 68
           Q+ KK LW  EED IL +YV  HG G W  + +++GL R GKSCRLRW NYL PN+ +G 
Sbjct: 12  QEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGN 71

Query: 69  MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKSGLQDKRKVNESSSC 128
            +++EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  + D      SS+ 
Sbjct: 72  FTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLVGD-----YSSAV 131

Query: 129 KKKDEDD 136
           K   EDD
Sbjct: 132 KTTGEDD 133

[Close]
BLAST of Carg17490 vs. TAIR 10
Match: AT5G14750.1 (myb domain protein 66 )

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-38
Identity = 90/195 (46.15%), Postives = 120/195 (61.54%), Query Frame = 0 

Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGGMSK 71
           KK LW  EED IL +YV+ HG+G+W  +++++GL R GKSCRLRW NYL PN+KRG  ++
Sbjct: 17  KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTE 76

Query: 72  EEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKS-GLQDKRKVNESSSCKK 131
           +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  G++D          +K
Sbjct: 77  QEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKD----------QK 136

Query: 132 KDEDDGNNKKQKKVINQTSYPQPQMCS---DNWANQTHDIQRRNQ-----------EENR 191
             + +G+   Q  + N T   +    S   DN      +IQ  +Q           E+  
Sbjct: 137 TKQSNGDIVYQINLPNPTETSEETKISNIVDNNNILGDEIQEDHQGSNYLSSLWVHEDEF 196

The following BLAST results are available for this feature:
BLAST of Carg17490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021232.12.4e-135100.00Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6586381.12.0e-13499.16Transcription factor MYB82, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022937653.12.2e-13398.31transcription factor WER-like [Cucurbita moschata][more]
XP_023536786.11.2e-13197.47transcription factor WER-like [Cucurbita pepo subsp. pepo][more]
XP_022965906.16.3e-12895.78transcription factor WER-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg17490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTF79.3e-5077.12Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1[more]
Q9FJA21.3e-3865.09Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1[more]
Q962761.7e-3865.18Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1[more]
A0A4D6Q4S02.4e-3753.38Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 ... [more]
A0A4D6Q4114.1e-3765.09Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB1 PE=2 ... [more]
BLAST of Carg17490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FGK01.1e-13398.31transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4... [more]
A0A6J1HMX73.0e-12895.78transcription factor WER-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11146... [more]
A0A5D3BGT24.3e-11485.83Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A6J1G3P04.3e-11485.83transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV... [more]
A0A1S3C4274.3e-11485.83transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1[more]
BLAST of Carg17490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52600.16.6e-5177.12myb domain protein 82 [more]
AT5G35550.19.0e-4065.09Duplicated homeodomain-like superfamily protein [more]
AT5G40330.11.2e-3965.18myb domain protein 23 [more]
AT3G27920.13.8e-3859.84myb domain protein 0 [more]
AT5G14750.14.9e-3846.15myb domain protein 66 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 12..62
e-value: 5.3E-12
score: 55.9
coord: 65..113
e-value: 1.8E-16
score: 70.7
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 8..60
score: 10.41773
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 61..111
score: 10.51063
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 16..60
e-value: 1.40061E-9
score: 50.2666
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 69..111
e-value: 9.40898E-12
score: 56.4298
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 66..111
e-value: 4.2E-14
score: 52.5
coord: 14..60
e-value: 6.7E-13
score: 48.6
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 61..115
score: 24.082739
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 8..60
score: 16.439093
NoneNo IPR availableGENE3D1.10.10.60coord: 4..66
e-value: 3.0E-17
score: 64.2
NoneNo IPR availableGENE3D1.10.10.60coord: 69..148
e-value: 2.5E-20
score: 74.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..141
NoneNo IPR availablePANTHERPTHR47999TRANSCRIPTION FACTOR MYB8-RELATED-RELATEDcoord: 5..225
NoneNo IPR availablePANTHERPTHR47999:SF21TUBER-SPECIFIC AND SUCROSE-RESPONSIVE ELEMENT BINDING FACTORcoord: 5..225
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17490-RACarg17490-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0000976 transcription cis-regulatory region binding
molecular_function GO:0022857 transmembrane transporter activity