Carg17489 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17489
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RabGAP/TBC domain-containing protein
Location	Carg_Chr12: 11228610 .. 11230428 (+)
RNA-Seq Expression	Carg17489
Synteny	Carg17489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAGTTCTGCAGGCATGATGCGCACCGATAGCGGTCGAGGAAGCTCATCGAGGCAACCGGAAGGTGCAGAGATTGTTTATTCGAAAGAAAATGTAACGATTCAGCCTACGCAGTTTGCGTCTGAAAGGATTCGTGGAAGATTGAGGTTGATCAAGCGAGAATCGTCTCTGTTCATTGTAAGCACCATTAATCAGGATTTCTTGTTTATTTGGAATGAGAAATCTGTATTTTGATATTCTTGCATCACTGGAGATGTTTCTTGTTTTTGATTGTAGACCTGGATTCCTTACGAAGGACAAAACTCAAATGCGAAATTATCGGTGAGAGGTAGTTTCCATTCTCTTCTTTCTATGAATTTCTTGTCTGTGCATTTCTTAAATGTAGATAGAAATCTGTACGCCATTAGAGCAGTGTCAATCACTGAAATGAGGTCTATCCGTCGCCATACTCCAGCAACAGATTATCACCATCTGGAAAACAACAAATCATATGTGATGTTATTGAGATGGATGTGTAGGTTTACTAGTCAGATGCCCTAGGAAATTTGACATCTCAGAAACTCATAATAGCCAAGATTATAGTTATCATTTACATGGCTATAGGGGAAGGTAATAGTTGTGATTGAATATGTTGGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCGTGGGTTTATAATCAAGAAATACTATCTTCATTGGAGTGAGGCCTTTTGGGGAAGACCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATCCGTGATTCCTAACAGAATAATTTGGTTAGAAGATTGTCCTACTAGTACTTGGGAAACCAAGTTTGGCTACATTTTGGGACAAAAACTTCTTCCCTATTCTCTATATCTTCATTTGAGGAATTTGACAATATTTGCCCGAAGAGCAGAATGACACTTGTAACAAGAGATTGATCTCTAGACCTTAGTTAAAAGTACTTGAATGTATCCATCGGTTGGAAACATTCTATAGGCAATTCATAGAATGGAAAGGGTTGAGGCCTAATTCTTACTTGATTAAACTACCAATGAACATTGCATTTCAAAGACATTCAATGTATCAAATTTAACTGAATATCATGCTCCTGATGGGTTCCTGCTGGCTATTGAAATGGTAAGCTGTTTAGGTTAAGAAGAGTCGATTGATGCAGAATGCATGCTGCAACTATATCCTTTTGTATACACACCTTAGGTTACTTATTTATTGTGGGGTTACTATGTTGTTAGTTATTTGAGAATTAACATTTACAATTGGTAATTAGGGATAGCTCTCTACTTGTAATTTAGCTGGCTTCCCTCCTATAGAAGGGCCAAGCCACCCTAACTTTGTGCCACCGCTTTGTATGGTAGGCCAATTTTAAACATCTGAAATTTCTTTTGAGTTCTCCTACATGCTGATGTTTACTATCATTTTAATCGTCGTGTATGTCGTTTTATGCCGAAGCACATTTTTTATAGTGAATTAGTTTCTCATGTGTTCTTTCTATTAATTACCTTGCTGATTTGTTCTTCATTCACGTACAGAGAATTCGAATACGGAAAGGTTATGCATCTATGGGAGGTGTTGTGGACTCATTATCTGTCTGAGCACCTGCATCTATACATTTGTGTTACGATCTTGAAGCGCTACCGTAACAAAATAATGGAGGAGCAGATGGACTTCGACACGCTCTTGAAGTTTATCAATGAGTTGAATGGTCACATTGACCTTGACGCTGCCATCAGGGATGCAGAAGCTTTATTGTGCGTGTGCAGGGGAGAATGTTGCTGCTAA

mRNA sequence

TTAGAGTTCTGCAGGCATGATGCGCACCGATAGCGGTCGAGGAAGCTCATCGAGGCAACCGGAAGGTGCAGAGATTGTTTATTCGAAAGAAAATGTAACGATTCAGCCTACGCAGTTTGCGTCTGAAAGGATTCGTGGAAGATTGAGGTTGATCAAGCGAGAATCGTCTCTGTTCATTACCTGGATTCCTTACGAAGGACAAAACTCAAATGCGAAATTATCGGTGAGAGGTAGTTTCCATTCTCTTCTTTCTATGAATTTCTTGTCTGTGCATTTCTTAAATGTAGATAGAAATCTGTACGCCATTAGAGCAGTGTCAATCACTGAAATGAGAGAATTCGAATACGGAAAGGTTATGCATCTATGGGAGGTGTTGTGGACTCATTATCTGTCTGAGCACCTGCATCTATACATTTGTGTTACGATCTTGAAGCGCTACCGTAACAAAATAATGGAGGAGCAGATGGACTTCGACACGCTCTTGAAGTTTATCAATGAGTTGAATGGTCACATTGACCTTGACGCTGCCATCAGGGATGCAGAAGCTTTATTGTGCGTGTGCAGGGGAGAATGTTGCTGCTAA

Coding sequence (CDS)

ATGATGCGCACCGATAGCGGTCGAGGAAGCTCATCGAGGCAACCGGAAGGTGCAGAGATTGTTTATTCGAAAGAAAATGTAACGATTCAGCCTACGCAGTTTGCGTCTGAAAGGATTCGTGGAAGATTGAGGTTGATCAAGCGAGAATCGTCTCTGTTCATTACCTGGATTCCTTACGAAGGACAAAACTCAAATGCGAAATTATCGGTGAGAGGTAGTTTCCATTCTCTTCTTTCTATGAATTTCTTGTCTGTGCATTTCTTAAATGTAGATAGAAATCTGTACGCCATTAGAGCAGTGTCAATCACTGAAATGAGAGAATTCGAATACGGAAAGGTTATGCATCTATGGGAGGTGTTGTGGACTCATTATCTGTCTGAGCACCTGCATCTATACATTTGTGTTACGATCTTGAAGCGCTACCGTAACAAAATAATGGAGGAGCAGATGGACTTCGACACGCTCTTGAAGTTTATCAATGAGTTGAATGGTCACATTGACCTTGACGCTGCCATCAGGGATGCAGAAGCTTTATTGTGCGTGTGCAGGGGAGAATGTTGCTGCTAA

Protein sequence

MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYEGQNSNAKLSVRGSFHSLLSMNFLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEALLCVCRGECCC

Homology

[Close]

BLAST of Carg17489 vs. NCBI nr
Match: KAG7021231.1 (GYP7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 378.6 bits (971), Expect = 3.1e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
           MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE
Sbjct: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60

Query: 61  GQNSNAKLSVRGSFHSLLSMNFLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHLWEVL 120
           GQNSNAKLSVRGSFHSLLSMNFLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHLWEVL
Sbjct: 61  GQNSNAKLSVRGSFHSLLSMNFLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHLWEVL 120

Query: 121 WTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEALLC 180
           WTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEALLC
Sbjct: 121 WTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEALLC 180

Query: 181 VCRGECCC 189
           VCRGECCC
Sbjct: 181 VCRGECCC 188

[Close]

BLAST of Carg17489 vs. NCBI nr
Match: XP_023545989.1 (TBC1 domain family member 15 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. NCBI nr
Match: XP_023545989.1 (TBC1 domain family member 15 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-22
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
          +MRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26 IMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61 GQNSNAKLSVR 72
          GQNSNAKLS R
Sbjct: 86 GQNSNAKLSER 96

HSP 2 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. NCBI nr
Match: XP_022946430.1 (TBC1 domain family member 15 isoform X2 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
          MMRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26 MMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61 GQNSNAKLSVR 72
          GQNSNAKLS R
Sbjct: 86 GQNSNAKLSER 96

HSP 2 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 561 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 620

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 621 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 650

[Close]

BLAST of Carg17489 vs. NCBI nr
Match: XP_022946429.1 (TBC1 domain family member 15 isoform X1 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-30
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
           MMRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26  MMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61  GQNSNAKLSVRGSFHSLLSMN----FLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHL 120
           GQNSNAKLS RGS+    + N     L V+FL VD+NLY IRAV  TE+R          
Sbjct: 86  GQNSNAKLSERGSWLWNCNRNRNFVLLIVYFLIVDKNLYTIRAVPFTEVRSIRRHTPAFG 145

HSP 2 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. ExPASy Swiss-Prot
Match: P09379 (GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=GYP7 PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R + +   RE  +  V+ LWEVLWT YLS    L++C+ IL ++++ +++    FD 
Sbjct: 590 FFFRMLLVWFKRELLWDDVLRLWEVLWTDYLSSQFVLFVCLAILDKHKDVMIDHLAGFDE 649

Query: 155 LLKFINELNGHIDLDAAIRDAEAL 179
           +LK++NEL+  IDLD  +  AE L
Sbjct: 650 ILKYMNELSMTIDLDELLVRAELL 673

[Close]

BLAST of Carg17489 vs. ExPASy Swiss-Prot
Match: P48365 (GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GYP7 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 35/98 (35.71%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 83  LSVHFLNVDRN--LYAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKR 142
           LS H    D     +  R + +   REFE   +MH+WE  WT Y S    L+  + IL++
Sbjct: 590 LSEHLNKCDSGNLFFCFRMLLVWFKREFEMEDIMHIWENFWTFYYSSQFQLFFMLAILQK 649

Query: 143 YRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEAL 179
               I++    FD +LKF NELNG +D +  +  AE L
Sbjct: 650 NSQAILQHLNQFDQILKFFNELNGKLDWNDLMVRAELL 687

[Close]

BLAST of Carg17489 vs. ExPASy Swiss-Prot
Match: Q8TC07 (TBC1 domain family member 15 OS=Homo sapiens OX=9606 GN=TBC1D15 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-09
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R + I   REF +  ++ LWEV+WT     + HL +C  IL+  + +IME+   F+ 
Sbjct: 527 FCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEKQQIMEKHYGFNE 586

Query: 155 LLKFINELNGHIDLDAAIRDAEAL 179
           +LK INEL+  ID++  +  AEA+
Sbjct: 587 ILKHINELSMKIDVEDILCKAEAI 610

[Close]

BLAST of Carg17489 vs. ExPASy Swiss-Prot
Match: Q9CXF4 (TBC1 domain family member 15 OS=Mus musculus OX=10090 GN=Tbc1d15 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R + I   REF +  ++ LWEV+WT    ++ HL +C  IL+  + +IM +   F+ 
Sbjct: 510 FCFRWLLIRFKREFSFLDILRLWEVMWTELPCKNFHLLLCCAILESEKQQIMAKHYGFNE 569

Query: 155 LLKFINELNGHIDLDAAIRDAEAL 179
           +LK INEL+  ID++  +  AEA+
Sbjct: 570 ILKHINELSMKIDVEDILCKAEAI 593

[Close]

BLAST of Carg17489 vs. ExPASy Swiss-Prot
Match: Q6BU76 (GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GYP7 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-08
Identity = 45/171 (26.32%), Postives = 82/171 (47.95%), Query Frame = 0


Query: 20  IVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPY-EGQNSNAKLSVRGSFHSLL 79
           + Y++ NV +   Q  ++ +       + ES  F  ++ + +    N      G  + +L
Sbjct: 525 LTYNEHNVNLGYVQGMTDLLSPLYVTFQDESLTFWAFVNFMDRMERNFLRDQSGMKNQML 584

Query: 80  SMNFLSVHFLNVD----------RNLY-AIRAVSITEMREFEYGKVMHLWEVLWTHYLSE 139
           ++N L V F+  D           +LY   R + +   REFE+  V+ LWE+LWT Y S 
Sbjct: 585 TLNEL-VQFMLPDLFKHLEKCESTDLYFFFRMLLVWFKREFEWSSVLSLWEILWTDYYSG 644

Query: 140 HLHLYICVTILKRYRNKIMEEQMDFDTLLKFINELNGHIDLDAAIRDAEAL 179
             HL+  + +L      I +    FD +LK++N+L+ +++L+  +  AE L
Sbjct: 645 QFHLFFALAVLSDNERIIRQNLSRFDEVLKYMNDLSMNMNLNHLLIRAELL 694

[Close]

BLAST of Carg17489 vs. ExPASy TrEMBL
Match: A0A6J1KJ59 (TBC1 domain family member 15 OS=Cucurbita maxima OX=3661 GN=LOC111493698 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 7.7e-34
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. ExPASy TrEMBL
Match: A0A6J1KJ59 (TBC1 domain family member 15 OS=Cucurbita maxima OX=3661 GN=LOC111493698 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
          MMRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26 MMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61 GQNSNAKLSVR 72
          GQNSNAKLS R
Sbjct: 86 GQNSNAKLSER 96

HSP 2 Score: 153.7 bits (387), Expect = 7.7e-34
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. ExPASy TrEMBL
Match: A0A6J1G3U9 (TBC1 domain family member 15 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450488 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
          MMRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26 MMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61 GQNSNAKLSVR 72
          GQNSNAKLS R
Sbjct: 86 GQNSNAKLSER 96

HSP 2 Score: 153.7 bits (387), Expect = 7.7e-34
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLYICV ILKRYRNKIM EQMDFDT
Sbjct: 561 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYICVAILKRYRNKIMGEQMDFDT 620

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 621 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 650

[Close]

BLAST of Carg17489 vs. ExPASy TrEMBL
Match: A0A6J1G3R3 (TBC1 domain family member 15 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450488 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.0e-31
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
           MMRTDSGRGSSS +PE  E+VYSKENVTI PTQFASERI GRLRLIK+ S LFITWIPY+
Sbjct: 26  MMRTDSGRGSSSSEPEETEVVYSKENVTIHPTQFASERISGRLRLIKQGSCLFITWIPYK 85

Query: 61  GQNSNAKLSVRGSFHSLLSMN----FLSVHFLNVDRNLYAIRAVSITEMREFEYGKVMHL 120
           GQNSNAKLS RGS+    + N     L V+FL VD+NLY IRAV  TE+R          
Sbjct: 86  GQNSNAKLSERGSWLWNCNRNRNFVLLIVYFLIVDKNLYTIRAVPFTEVRSIRRHTPAFG 145

HSP 2 Score: 151.0 bits (380), Expect = 5.0e-33
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHYLSEHLHLY+CV ILKRYRNKIM EQMDFDT
Sbjct: 538 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYLSEHLHLYLCVAILKRYRNKIMGEQMDFDT 597

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHI+LDAAIRDAEA LCVC GE
Sbjct: 598 LLKFINELSGHINLDAAIRDAEA-LCVCAGE 627

[Close]

BLAST of Carg17489 vs. ExPASy TrEMBL
Match: A0A6J1CNB3 (TBC1 domain family member 15 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013050 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
          MMR+DSGRGSSS +PEGAE+VYSKENVTI PTQFASERI GRLRL K+ S LFITWIPY+
Sbjct: 26 MMRSDSGRGSSSSEPEGAEVVYSKENVTIHPTQFASERISGRLRLTKQGSGLFITWIPYK 85

Query: 61 GQNSNAKLSVR 72
          GQNSNA+LS R
Sbjct: 86 GQNSNARLSER 96

HSP 2 Score: 150.6 bits (379), Expect = 6.5e-33
Identity = 75/91 (82.42%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R V I   REFEY KVMHLWEVLWTHY SEHLHLYICV +LKRYRNKIM EQMDFDT
Sbjct: 537 FCFRWVLIQFKREFEYEKVMHLWEVLWTHYPSEHLHLYICVAVLKRYRNKIMGEQMDFDT 596

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLDAAIRDAEA LCVC GE
Sbjct: 597 LLKFINELSGHIDLDAAIRDAEA-LCVCAGE 626

[Close]

BLAST of Carg17489 vs. TAIR 10
Match: AT5G52580.1 (RabGAP/TBC domain-containing protein )

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-31
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R + I   REFEY K M LWEV+WTHYLSEH HLY+CV +LKR R+KIM EQMDFDT
Sbjct: 555 FCFRWILIQFKREFEYEKTMQLWEVMWTHYLSEHFHLYVCVAVLKRCRSKIMGEQMDFDT 614

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLD+ +RDAEA LC+  GE
Sbjct: 615 LLKFINELSGHIDLDSTVRDAEA-LCIEAGE 644

HSP 2 Score: 92.0 bits (227), Expect = 5.3e-19
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
           MMR+DSG+ S   + E A ++Y K+NV I PTQFASERI GRL+L K++S LF++WIPY+
Sbjct: 28  MMRSDSGKRSLQSEHEDAVLIYLKDNVAIHPTQFASERISGRLKLTKQDSVLFLSWIPYK 87

Query: 61  GQNSNAKLSVRG-SFHSLLSMNFLSV 86
           GQ SNAKLS +  S +++ ++ F  V
Sbjct: 88  GQTSNAKLSEKDRSLYTITAVPFTEV 113

[Close]

BLAST of Carg17489 vs. TAIR 10
Match: AT5G52580.2 (RabGAP/TBC domain-containing protein )

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-31
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 95  YAIRAVSITEMREFEYGKVMHLWEVLWTHYLSEHLHLYICVTILKRYRNKIMEEQMDFDT 154
           +  R + I   REFEY K M LWEV+WTHYLSEH HLY+CV +LKR R+KIM EQMDFDT
Sbjct: 572 FCFRWILIQFKREFEYEKTMQLWEVMWTHYLSEHFHLYVCVAVLKRCRSKIMGEQMDFDT 631

Query: 155 LLKFINELNGHIDLDAAIRDAEALLCVCRGE 186
           LLKFINEL+GHIDLD+ +RDAEA LC+  GE
Sbjct: 632 LLKFINELSGHIDLDSTVRDAEA-LCIEAGE 661

HSP 2 Score: 92.0 bits (227), Expect = 5.3e-19
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MMRTDSGRGSSSRQPEGAEIVYSKENVTIQPTQFASERIRGRLRLIKRESSLFITWIPYE 60
           MMR+DSG+ S   + E A ++Y K+NV I PTQFASERI GRL+L K++S LF++WIPY+
Sbjct: 28  MMRSDSGKRSLQSEHEDAVLIYLKDNVAIHPTQFASERISGRLKLTKQDSVLFLSWIPYK 87

Query: 61  GQNSNAKLSVRG-SFHSLLSMNFLSV 86
           GQ SNAKLS +  S +++ ++ F  V
Sbjct: 88  GQTSNAKLSEKDRSLYTITAVPFTEV 113

The following BLAST results are available for this feature:

BLAST of Carg17489 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021231.1	3.1e-101	100.00	GYP7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023545989.1	1.6e-33	84.62	TBC1 domain family member 15 [Cucurbita pepo subsp. pepo]	[more]
XP_023545989.1	1.3e-22	81.69	TBC1 domain family member 15 [Cucurbita pepo subsp. pepo]	[more]
XP_022946430.1	4.4e-23	83.10	TBC1 domain family member 15 isoform X2 [Cucurbita moschata]	[more]
XP_022946429.1	1.7e-30	63.71	TBC1 domain family member 15 isoform X1 [Cucurbita moschata]	[more]

Pages

BLAST of Carg17489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09379	4.4e-10	38.10	GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) ...	[more]
P48365	1.3e-09	35.71	GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]
Q8TC07	3.7e-09	36.90	TBC1 domain family member 15 OS=Homo sapiens OX=9606 GN=TBC1D15 PE=1 SV=2	[more]
Q9CXF4	1.1e-08	35.71	TBC1 domain family member 15 OS=Mus musculus OX=10090 GN=Tbc1d15 PE=1 SV=1	[more]
Q6BU76	3.2e-08	26.32	GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS...	[more]

BLAST of Carg17489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJ59	7.7e-34	84.62	TBC1 domain family member 15 OS=Cucurbita maxima OX=3661 GN=LOC111493698 PE=4 SV...	[more]
A0A6J1KJ59	2.1e-23	83.10	TBC1 domain family member 15 OS=Cucurbita maxima OX=3661 GN=LOC111493698 PE=4 SV...	[more]
A0A6J1G3U9	2.1e-23	83.10	TBC1 domain family member 15 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1G3R3	8.0e-31	63.71	TBC1 domain family member 15 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1CNB3	1.6e-23	81.69	TBC1 domain family member 15 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

Pages

BLAST of Carg17489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52580.1	6.1e-31	69.23	RabGAP/TBC domain-containing protein	[more]
AT5G52580.2	6.1e-31	69.23	RabGAP/TBC domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 83..146 e-value: 9.4E-6 score: 25.4
None	No IPR available	GENE3D	1.10.472.80		coord: 74..182 e-value: 1.6E-15 score: 59.1
None	No IPR available	PANTHER	PTHR22957:SF502	RABGAP/TBC DOMAIN-CONTAINING PROTEIN	coord: 14..106 coord: 106..185
None	No IPR available	PANTHER	PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	coord: 106..185
None	No IPR available	PANTHER	PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	coord: 14..106
IPR021935	Small G protein signalling modulator 1/2, Rab-binding domain	PFAM	PF12068	PH_RBD	coord: 20..63 e-value: 3.5E-7 score: 29.9
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 105..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17489-RA	Carg17489-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane