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Carg17486 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAACTGAGTACAAAAGGCGCGGAGAACTTTGCTTTCCGAATCTCACCCACCGGCCTCCACCGCTTCTCTCTCTGGAAACCACTCTCTGTTTCTCTTTAGGCATCAGCCGGTGACGGACAGTTCACAGTAGACCTGCGATTGTCTCGCCGCCTTTTCGTTCGGTATTGTATTACTTCTTTACCTTTCTTTTAATTTCAATGTCTTTGTCTTGTGGTATATTTATTGTTGGGAAAATGGCTTAATGTTCCAGTAATTTGTTTTTGTATTTTGAAATGGGAGAATCCGACGCTGTTCATTGCCCATCGAACGTTCTGCCATTGCATTTTTCATCTGTATTTTCAAATAAGCAAAAGGGTTTAGAGGGAAAAGTTTTGAACTATGGATACCCATCTGACAAAGATTTTGAAAATTATTGAAAATCAAAAGTTGTAGAGTTCGATACTTATTTGTGAAATTAGTTTATGTGTGCTCGGAGCTGACCTGAACAATCACGGATGGTGTAATTTGTAAACTAGTCATTGTTGAGGATGATTGAGAGGGAATCCACGTTGGCTAATTAAGGGGATAATCATGGGTTTATAATTATGAGTAAGAAAAACATCTCTTCTATTGGTATGAGGCCTTTTAGAGAAACCAAAAGCAAAACCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTCGTGGTTCTTAACATGGTATTAGAGTCATGCCTTTAACTTAGTCATGTCAATAAAATCTTCAAATGTTGAACAAAGAAGTTGTAAGCCTCGAAGGTGTAGTAAAAAATGACTCAAGAGTCGAACAAATGGTGTATTTTGTTTGAGGGCTCTAGAGAAAGGAGTCGAGCTTCGATTAAGCGGAGACTGTTTGAGGGCTCCATGGGCTTCAGGGGAGGCTCTATGATGTACTTTGTTCAAGGGGACGATTGTTGAGAGTTGTTGGGAAGGAGTCTTGGCTAATTAAGGGGATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAAAAGAAAAGCCATGAGAGCTTATGCTCAAAGTAGACAATATCATACCATTGTGGAGGTTCGTGGTTCCTAACAGTCATCCCACTCGCTTATATCTGGCTTATCCCACACTTATATTTTGTTCACATGGTAGAAAGGATTGTTTTGTGTCAATGTTAATGTTCTTCGAAAAATTCTATTCTTATTTATTATGTTTGCCTATGGAAGGATTTTCCATTGCTGTACCCATTTTTTTTCTACTATGCATTCATGTAATGCTTTTTTCTCACTCAGATAATTGTGGATGCAATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGTAGCTCTTAAGTACTTTGAAGTTATGGAGATTTCCCGTTTGTGCTAACTTGCATATTGAAAAGATGTTAGTTTTTTAAATGTATACCCCCTGAGAAGTTTGGTTTACAGGGCGGGTTTACATCTTTCGCGGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTAGGCTCTGGCGTAATAAGTTCGGTCATCTATACATTAATTTGTTGGCCATTGACGATTTCTTCTAAATTATGATGAACAAAGCTCTTTACTTCAAAGATTATGGTATCTAATACTTCGTTTTGCAGGTCACATGGTCAGTACTGCTTCTTTGTCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAGCCCTCTTACAAAATCTACCTGTCTATTGGTATGATTTCTCAAAGTTCTTTGATAATTATCTATAGATATATGTAAGTTTTTCCTAGCTCTTTGTTTGGGTGGACGTCTCTTGATTTCATGTTTACCTTTTCTTCTTTGGTTATTTTTACGACGCTTCCACATTTATAGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACAGTGAATCAACTAACAGAATTGCAAAATGCCCGCATTCGAGTTGCCTATGATAAGTACGTTCGAGACACAAACGGTTATCCTTTTTGTTCTAGATTTATACTGTTCATGCCATGATATCTTTACAGCAACCTTGATTTTTACTTTTGGATGTCTAGGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGTAAGTGAAAAAATACCAAAACTTACCCGACTCGCCTTGTTTCTGATCCATTATACTCCAATACCTGTTTAACTAGCATTATGAACTCTTCCATGTTATTATGAACTATTTATCAGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGGTAACTTCTTTCATCCCAATCATATTTGATCTCTCTATTCTCTCATGATTTTTGTTTCTTACTAAACTTTACGCCCATGTTTCTCTATGTTCGTCTTGGTACCAAAAGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAATGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGAAAGAACATCACGACGATGAAAATTTCGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGAATTGCCACATCATTCCATTGCCTGATCTTCTATAAACAGCTTTATGACGTTTAACTAGCTGAAAGAGAGATCCTTAAACCTGATTCATACCCAAAATCCAACCCCATGTAGTGTAAATAGCAACGTTCTAAACCCTTTATGTTCAATATGATCAATAGCTTTCCTTAGAAAATGTTGTCACTTGCTCGGGCTAGCTTTCCTTATTGATGGCTCCTTTAGCATATAACATCTTTCGGACGAGGGTTGAAAAGGTCTCATGTTTATTATTAGAGATGTTCATTCTACCTGTCCTCGAACAGGGCAGGAAATATATGTTGAAGTAGATAATGTGGAGAATGTGATGTAAGGTTTCTCTCGGCAATTAGAGTTGTAAAGGTTTCATGTTTATTACTAGAGATGTTCATTTTACCTATGGAGACCTGTCTCGAATGAGGTAGGAAATCACTAGTTAAGTGGAAAATGTGGAGGATGTGATGAAAAGTTCTCTCCTAGTAGGGTTGGGGACGGAGATTATATTTCCTGACCTTACTTCGACCTCATGCAAATCTCGAGGTAGGAAATCTCTATTTTAAGTGAAAAATGTGGAGAATGTGATGTAAAGTTTCTCGCGAC AGAAAAACTGAGTACAAAAGGCGCGGAGAACTTTGCTTTCCGAATCTCACCCACCGGCCTCCACCGCTTCTCTCTCTGGAAACCACTCTCTGTTTCTCTTTAGGCATCAGCCGGTGACGGACAGTTCACAGTAGACCTGCGATTGTCTCGCCGCCTTTTCGTTCGATAATTGTGGATGCAATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGGCGGGTTTACATCTTTCGCGGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTCACATGGTCAGTACTGCTTCTTTGTCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAGCCCTCTTACAAAATCTACCTGTCTATTGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACAGTGAATCAACTAACAGAATTGCAAAATGCCCGCATTCGAGTTGCCTATGATAAGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAATGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGAAAGAACATCACGACGATGAAAATTTCGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGAATTGCCACATCATTCCATTGCCTGATCTTCTATAAACAGCTTTATGACGTTTAACTAGCTGAAAGAGAGATCCTTAAACCTGATTCATACCCAAAATCCAACCCCATGTAGTGTAAATAGCAACGTTCTAAACCCTTTATGTTCAATATGATCAATAGCTTTCCTTAGAAAATGTTGTCACTTGCTCGGGCTAGCTTTCCTTATTGATGGCTCCTTTAGCATATAACATCTTTCGGACGAGGGTTGAAAAGGTCTCATGTTTATTATTAGAGATGTTCATTCTACCTGTCCTCGAACAGGGCAGGAAATATATGTTGAAGTAGATAATGTGGAGAATGTGATGTAAGGTTTCTCTCGGCAATTAGAGTTGTAAAGGTTTCATGTTTATTACTAGAGATGTTCATTTTACCTATGGAGACCTGTCTCGAATGAGGTAGGAAATCACTAGTTAAGTGGAAAATGTGGAGGATGTGATGAAAAGTTCTCTCCTAGTAGGGTTGGGGACGGAGATTATATTTCCTGACCTTACTTCGACCTCATGCAAATCTCGAGGTAGGAAATCTCTATTTTAAGTGAAAAATGTGGAGAATGTGATGTAAAGTTTCTCGCGAC ATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGGCGGGTTTACATCTTTCGCGGATATGAAGAAAGTATGGATTGGAAGAAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTCACATGGTCAGTACTGCTTCTTTGTCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAGCCCTCTTACAAAATCTACCTGTCTATTGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTGGACATGAATGAGAGCTCTGCTTTGGAAACAGTGAATCAACTAACAGAATTGCAAAATGCCCGCATTCGAGTTGCCTATGATAAGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAATGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGAAAGAACATCACGACGATGAAAATTTCGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGA MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTIGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVASAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIRVAYDKLFADTPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEEKEHHDDENFDMELERMLTDVQQGTESSLILTLKDGGS Homology
BLAST of Carg17486 vs. NCBI nr
Match: KAG7021228.1 (hypothetical protein SDJN02_17916 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 582.4 bits (1500), Expect = 2.2e-162 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
BLAST of Carg17486 vs. NCBI nr
Match: KAG6586377.1 (Zinc finger BED domain-containing protein DAYSLEEPER, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 580.1 bits (1494), Expect = 1.1e-161 Identity = 298/299 (99.67%), Postives = 298/299 (99.67%), Query Frame = 0
BLAST of Carg17486 vs. NCBI nr
Match: XP_023536865.1 (uncharacterized protein LOC111798120 [Cucurbita pepo subsp. pepo] >XP_023536866.1 uncharacterized protein LOC111798120 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 576.2 bits (1484), Expect = 1.6e-160 Identity = 296/299 (99.00%), Postives = 298/299 (99.67%), Query Frame = 0
BLAST of Carg17486 vs. NCBI nr
Match: XP_022938175.1 (uncharacterized protein LOC111444339 [Cucurbita moschata]) HSP 1 Score: 571.2 bits (1471), Expect = 5.1e-159 Identity = 293/299 (97.99%), Postives = 296/299 (99.00%), Query Frame = 0
BLAST of Carg17486 vs. NCBI nr
Match: XP_022965853.1 (uncharacterized protein LOC111465616 [Cucurbita maxima]) HSP 1 Score: 571.2 bits (1471), Expect = 5.1e-159 Identity = 293/299 (97.99%), Postives = 296/299 (99.00%), Query Frame = 0
BLAST of Carg17486 vs. ExPASy TrEMBL
Match: A0A6J1HQ65 (uncharacterized protein LOC111465616 OS=Cucurbita maxima OX=3661 GN=LOC111465616 PE=4 SV=1) HSP 1 Score: 571.2 bits (1471), Expect = 2.5e-159 Identity = 293/299 (97.99%), Postives = 296/299 (99.00%), Query Frame = 0
BLAST of Carg17486 vs. ExPASy TrEMBL
Match: A0A6J1FIY6 (uncharacterized protein LOC111444339 OS=Cucurbita moschata OX=3662 GN=LOC111444339 PE=4 SV=1) HSP 1 Score: 571.2 bits (1471), Expect = 2.5e-159 Identity = 293/299 (97.99%), Postives = 296/299 (99.00%), Query Frame = 0
BLAST of Carg17486 vs. ExPASy TrEMBL
Match: A0A6J1CN36 (uncharacterized protein LOC111013003 OS=Momordica charantia OX=3673 GN=LOC111013003 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 9.2e-130 Identity = 240/285 (84.21%), Postives = 262/285 (91.93%), Query Frame = 0
BLAST of Carg17486 vs. ExPASy TrEMBL
Match: A0A5A7VCA1 (Putative mediator of RNA polymerase II transcription subunit 26 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00640 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 4.1e-122 Identity = 233/284 (82.04%), Postives = 254/284 (89.44%), Query Frame = 0
BLAST of Carg17486 vs. ExPASy TrEMBL
Match: A0A0A0LL25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008040 PE=4 SV=1) HSP 1 Score: 446.0 bits (1146), Expect = 1.2e-121 Identity = 233/284 (82.04%), Postives = 253/284 (89.08%), Query Frame = 0
BLAST of Carg17486 vs. TAIR 10
Match: AT3G53270.1 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein ) HSP 1 Score: 304.7 bits (779), Expect = 8.3e-83 Identity = 156/281 (55.52%), Postives = 213/281 (75.80%), Query Frame = 0
BLAST of Carg17486 vs. TAIR 10
Match: AT3G53270.4 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein ) HSP 1 Score: 304.7 bits (779), Expect = 8.3e-83 Identity = 156/281 (55.52%), Postives = 213/281 (75.80%), Query Frame = 0
BLAST of Carg17486 vs. TAIR 10
Match: AT3G53270.3 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein ) HSP 1 Score: 304.7 bits (779), Expect = 8.3e-83 Identity = 156/281 (55.52%), Postives = 213/281 (75.80%), Query Frame = 0
BLAST of Carg17486 vs. TAIR 10
Match: AT3G53270.2 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein ) HSP 1 Score: 304.7 bits (779), Expect = 8.3e-83 Identity = 156/281 (55.52%), Postives = 213/281 (75.80%), Query Frame = 0
BLAST of Carg17486 vs. TAIR 10
Match: AT3G53270.5 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein ) HSP 1 Score: 304.7 bits (779), Expect = 8.3e-83 Identity = 156/281 (55.52%), Postives = 213/281 (75.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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