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Carg17455 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGGTATCAAAACAAATCTAGAAAATTCCATCACATCCTTCGAATTTTCCGTTTGTTTCCCGGGAATATCTTGATGAATCATTTCAATTGTTTAAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGTTGAGAACGCACAGAAAACCTGAGAATTCAAGGTAATTTCTTCATGAACCACCTTATTTCTTCATAATTTTGTTTCATCTTTTATATATATATATATATATATATAATAGTAATTAAAATATTATTTTAGTTGATTTTTGTACTATGATATCCCACGTTGATTGGGGAGGAGAACGAAACACCCTTACAAAGGTGTGGAAACCTTTCACTAATAGATGTGTTGTCAACTTCTCCCTACCTGATAGTTATATATGCAGTAAGCCGTTGTTATTGCATTTTGCTTACATTCTCATATATAACACCAATTTCAATTTTTCAAATTTTACTTTCGAAATCTCTCTGTCCCGATTTTCTAAAACTTTCTTCTTGAACCGAGCCCAAAGGCTCGAGCATACGTCGCTTGACCGTAGGAATTTCAATTTTTCAAATCTTACTTTCGAAGTCTCTCTGCCCCTGTTTTCTAAAACTTTCTTCTTGAACCGGAGCCAAAGTCTCGAGCATACGTCGCTTGACCATAGGCGACGCAAGAACGAATAGACTTAACTCACTTGTTGCTGGAAAGTGAGTGCTACCTTTTGCTTACATTCCCATATATAACACCAATTTCAATTTTTCAAATATTATTTTTGAAATCTCTCTGCCCCTATTTTCTAAAACTTTCTTCTTAAATCGAGGCCAAAGGCTCGAGCATACGTCGCTTGACCATAGGGCGATGCAAGAACGAATAGGTTTAACTCACTTGTTGTTGGAAAGTAAGTGCTACACAATCGCAAATCCACTGCCACCAAACAACGGTTTACTGCATATAACTATGGGAGGGGATATGACTAGCCTAAACAAGATAATATCTGTTGGTTGTGGGGTTAGGTTGTTATACTTGAATTTCTAATTTTAGTTTATATAGTTTAATTATTTGATAATTTTTTTTTAAAAAAAGTAGTTTACATTAATTTTCCTTGGAGCCTAAATCATTTGGTCTTTTAAGCATATAAATTGTTATTATTCTTATTTAAAAAATTAACTTTTAACTTACTAATTTTAAAAATATTTTAATCATATTTGAACTAAAATTAAGTAAGTAAAGAAAATAAAAACTACAAAAATCATTATTATTATTATTATTATTTTGTTTTCTATATTGATGGACAATAAATGGGGGTTTTCGTGCATAATTAATTAAATTAAAAGTTTAAAGGTATAATTATAACACGAAACAAAGTTGAAGGAGTTGATTGCAACCCGTAACAAAGTTTAGGGATTAATTGGTCAAATGTTTGTTTTAATTATTAAAACTTTAGGGTTAGAAAAAAAAAACTAATTAAATCATTGTATTAATTTTCATTAAATTGAACTTAAATCTAAATTTATAGCAAAAACCAAACACTTTGACCTAAAAAGAAGAAAGAAATATGAAAGATACATTTTTATATAAATATTTAATAATAAAAATAAAACAAAAAACCCTCGGAATAAATATGAAAAAAAAAAAAGAATTTGAGCATAGTTCAATTGATTATATATATTTTATCAAAAGATAAAATAGATGTAGCTAAATACCGTTCTTATAATTTAAGCTTAATTTCAATTTGGTCCCTAGAATTTTAAAAGTTTCAATTTAGTCTCTAATTTGATTAAACCTTACAAATCGTCCCTAAACTATATTCGATAGCCATTTAAAAATCTAATTCACTTCTGTTTATTTTTACTCGACCCTATAATTTAATCCCGACAACTAACGAATTAGCTACTTGAAGGCTCTACTAAATTATCACAATAGAACTAATTCAAAATTTTTAAATCATGCTCAAACTACGAGAATAAGCAAATTTAAAATTAACGTTAAAATCTATTAATTTTCTTTTTGAATTATAGGAAGAAGAGTAGTAGTGAAGAAGTAGGGTTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGGCCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTGATTGTCCTTGTTGTAGGTACCCTGTTCTCGCTCAATAA ATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGAAGAAGAGTAGTAGTGAAGAAGTAGGGTTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGGCCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTGATTGTCCTTGTTGTAGGTACCCTGTTCTCGCTCAATAA ATGGCTGGAATGTTGCCTGGAGTTGAATGCGCGAGACGGCGGCGGTTCCACCAGAGCATAACGTCATCGGACTCGGCGTCCACGGCGGCGAAATTAGGATCCACAAGAAGGTCCTCCTTCTGTTTGTATGCAAGCAACCGTGATTTCCACCTCACTTCATCTTCTTCACAGCAACGGTGCTCTTCGAATCACGCTTACCAGGACGAGAAGCTTGGGCAAGCTGCAAGAGAAGCTAAGGAACGGTTGGATGAGAGGAAGAAGAGTAGTAGTGAAGAAGTAGGGTTGAAGAAGGAGAAAGCGAAGGGAAAGGAAGAAACAACAACGAAGAAGAGGTTCGGTTGGGGGAAGCTAATGAAATGGAAAGCCTCCGAACAGGAAGAGTGCACTGTTTGTCTCGAAAAGTTCAGAGCGGCCGAGCCACTAGTCCATCTTCCATGCGCTCACAAGTTCCACTCCGCCTGTTTGGTCCCTTGGCTCCAAGCTAATGCTGATTGTCCTTGTTGTAGGTACCCTGTTCTCGCTCAATAA MAGMLPGVECARRRRFHQSITSSDSASTAAKLGSTRRSSFCLYASNRDFHLTSSSSQQRCSSNHAYQDEKLGQAAREAKERLDERKKSSSEEVGLKKEKAKGKEETTTKKRFGWGKLMKWKASEQEECTVCLEKFRAAEPLVHLPCAHKFHSACLVPWLQANADCPCCRYPVLAQ Homology
BLAST of Carg17455 vs. NCBI nr
Match: KAG7021197.1 (putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 345.5 bits (885), Expect = 2.7e-91 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Carg17455 vs. NCBI nr
Match: XP_022938062.1 (E3 ubiquitin-protein ligase ZNRF3-like isoform X1 [Cucurbita moschata] >XP_022938063.1 E3 ubiquitin-protein ligase ZNRF3-like isoform X1 [Cucurbita moschata] >XP_022938064.1 E3 ubiquitin-protein ligase ZNRF3-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 331.6 bits (849), Expect = 4.0e-87 Identity = 172/186 (92.47%), Postives = 173/186 (93.01%), Query Frame = 0
BLAST of Carg17455 vs. NCBI nr
Match: XP_023538036.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 323.9 bits (829), Expect = 8.3e-85 Identity = 167/186 (89.78%), Postives = 170/186 (91.40%), Query Frame = 0
BLAST of Carg17455 vs. NCBI nr
Match: XP_022965966.1 (probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima] >XP_022965967.1 probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima] >XP_022965968.1 probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima]) HSP 1 Score: 314.7 bits (805), Expect = 5.0e-82 Identity = 163/186 (87.63%), Postives = 167/186 (89.78%), Query Frame = 0
BLAST of Carg17455 vs. NCBI nr
Match: KAG6586351.1 (putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79 Identity = 162/186 (87.10%), Postives = 164/186 (88.17%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy Swiss-Prot
Match: Q852U6 (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09 Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy Swiss-Prot
Match: Q08D68 (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis OX=8364 GN=znrf3 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08 Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy Swiss-Prot
Match: Q4KLR8 (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis OX=8355 GN=znrf3 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 8.5e-08 Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy Swiss-Prot
Match: Q9ULT6 (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens OX=9606 GN=ZNRF3 PE=1 SV=3) HSP 1 Score: 57.0 bits (136), Expect = 2.5e-07 Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy TrEMBL
Match: A0A6J1FHS8 (E3 ubiquitin-protein ligase ZNRF3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444265 PE=4 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87 Identity = 172/186 (92.47%), Postives = 173/186 (93.01%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy TrEMBL
Match: A0A6J1HQI5 (probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465688 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82 Identity = 163/186 (87.63%), Postives = 167/186 (89.78%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy TrEMBL
Match: A0A6J1FC43 (probable E3 ubiquitin-protein ligase RHY1A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444265 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 7.3e-79 Identity = 162/186 (87.10%), Postives = 163/186 (87.63%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy TrEMBL
Match: A0A6J1HSD8 (probable E3 ubiquitin-protein ligase RHY1A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465688 PE=4 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 9.3e-74 Identity = 153/186 (82.26%), Postives = 157/186 (84.41%), Query Frame = 0
BLAST of Carg17455 vs. ExPASy TrEMBL
Match: A0A6J1G4D6 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC111450678 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66 Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = 0
BLAST of Carg17455 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein ) HSP 1 Score: 141.0 bits (354), Expect = 9.3e-34 Identity = 92/193 (47.67%), Postives = 117/193 (60.62%), Query Frame = 0
BLAST of Carg17455 vs. TAIR 10
Match: AT1G49850.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of Carg17455 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein ) HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12 Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0
BLAST of Carg17455 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 0
BLAST of Carg17455 vs. TAIR 10
Match: AT4G26400.2 (RING/U-box superfamily protein ) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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