Carg17208 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17208
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 12978259 .. 12978765 (+)
RNA-Seq ExpressionCarg17208
SyntenyCarg17208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

mRNA sequence

ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

Coding sequence (CDS)

ATGGCCGATCCTTATTTTCTAGATCGAACGAGCACTTCCGGCTATAAGCCAACCAGAGTTTCAAACGAGTTTCACCTTCAAAATGCCGCCGTCTACGGTGGCAGCCACGGCGGACTTTTGCAAACGCCGCCACGATTCTTCTCAGTTCCATCAATCCACAGCCACCAGCTTCTCCCCTTCATCCAACAACAACAACAACAACCACCGCCTCTTCTTACACCGCCGCCGATTCTACGGCCCCACCGCACTCTTTCTTCTCAACCCCGGTCATCCCACTCTCTTAAGAAATCCAAATCAATCAAAAGAGACAAAGACTCGGCGGCGGTGGTTGATCGGCGGGTTCCTTCCAGAACCTTCTCCTCGCCGGCGGCGGCAAAGAGGGTGGTTAGAGTTGAGGAGTTTGACAAATTGTCGGGGTGTTTGTTTGCGGTTATTTCTCCGCCGCCCAGTAGCTTGCCGTTGCCCAAATTTTGTCTGAGGCCGACGAAGCTCAACTGTAATGCGTAG

Protein sequence

MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPFIQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA
Homology
BLAST of Carg17208 vs. NCBI nr
Match: KAG6608604.1 (hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037922.1 hypothetical protein SDJN02_01553, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.5 bits (859), Expect = 2.6e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPF 60
           MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPF
Sbjct: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQNAAVYGGSHGGLLQTPPRFFSVPSIHSHQLLPF 60

Query: 61  IQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFS 120
           IQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFS
Sbjct: 61  IQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVPSRTFS 120

Query: 121 SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 169
           SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA
Sbjct: 121 SPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCNA 168

BLAST of Carg17208 vs. NCBI nr
Match: KAA0063295.1 (uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 121/173 (69.94%), Postives = 138/173 (79.77%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVP 120
           F QQ +   PPLL PPP     LRPHR+L SQPR SHSLKKSKS +++KDSAAVVDRR+P
Sbjct: 61  FFQQNKS--PPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSAAVVDRRIP 120

Query: 121 SRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           SRT SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 SRTISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

BLAST of Carg17208 vs. NCBI nr
Match: XP_008466665.1 (PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo] >TYK31480.1 uncharacterized protein E5676_scaffold455G007960 [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVP 120
           F QQ +   PPLL PPP     LRPHR+L SQPR SHSLKKSKS +++KDSA VVDRR+P
Sbjct: 61  FFQQNKS--PPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIP 120

Query: 121 SRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           SRT SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 SRTISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

BLAST of Carg17208 vs. NCBI nr
Match: KGN60046.1 (hypothetical protein Csa_001363 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 4.3e-54
Identity = 122/175 (69.71%), Postives = 138/175 (78.86%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR+SN FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI-----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRV 120
           F QQ +   PPLL PPP      +RPHR+L SQPR SHSLKKSKS +++KDSAAVVDRR+
Sbjct: 61  FFQQNKS--PPLLPPPPTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRI 120

Query: 121 PSRTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           PSRT SS  A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RP K LNCN
Sbjct: 121 PSRTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCN 172

BLAST of Carg17208 vs. NCBI nr
Match: XP_022139188.1 (uncharacterized protein LOC111010153 [Momordica charantia])

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 122/179 (68.16%), Postives = 134/179 (74.86%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTR---VSN---EFHLQN-AAVYGGSHGGLLQTPPRFFSVPS-I 60
           MADPYFLDR   +GY  TR   +SN    ++L+N AA  G +HGGLL+TPPRFFS PS I
Sbjct: 1   MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60

Query: 61  HSHQLLPFIQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSL--KKSKSIKRDKD--SAA 120
           H HQ  PFI   Q QPPPLL PPPILRPHR+L SQP  SHSL  KKSKS KR +   S A
Sbjct: 61  HGHQFHPFI---QLQPPPLL-PPPILRPHRSLPSQPARSHSLNPKKSKSAKRSEKSFSPA 120

Query: 121 VVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCN 168
           VVDRR  SRT S+ AAAKRVV+VEE D LSGCLFA +SPPPSSLPLPKFCLRP KLNCN
Sbjct: 121 VVDRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLNCN 173

BLAST of Carg17208 vs. ExPASy TrEMBL
Match: A0A5A7VBL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001180 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 121/173 (69.94%), Postives = 138/173 (79.77%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVP 120
           F QQ +   PPLL PPP     LRPHR+L SQPR SHSLKKSKS +++KDSAAVVDRR+P
Sbjct: 61  FFQQNKS--PPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSAAVVDRRIP 120

Query: 121 SRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           SRT SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 SRTISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

BLAST of Carg17208 vs. ExPASy TrEMBL
Match: A0A5D3E771 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007960 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.4e-55
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVP 120
           F QQ +   PPLL PPP     LRPHR+L SQPR SHSLKKSKS +++KDSA VVDRR+P
Sbjct: 61  FFQQNKS--PPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIP 120

Query: 121 SRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           SRT SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 SRTISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

BLAST of Carg17208 vs. ExPASy TrEMBL
Match: A0A1S3CRS4 (uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.4e-55
Identity = 120/173 (69.36%), Postives = 137/173 (79.19%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR++N FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRITNNFHLENLAAVSGYSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRVP 120
           F QQ +   PPLL PPP     LRPHR+L SQPR SHSLKKSKS +++KDSA VVDRR+P
Sbjct: 61  FFQQNKS--PPLLPPPPTTPSNLRPHRSLHSQPR-SHSLKKSKSTRKEKDSATVVDRRIP 120

Query: 121 SRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           SRT SS  AAKRVVRVEE +KLSGC FA+ISPPPSSLPLPKF +RP K L CN
Sbjct: 121 SRTISSAGAAKRVVRVEELEKLSGCFFAIISPPPSSLPLPKFSMRPAKALKCN 170

BLAST of Carg17208 vs. ExPASy TrEMBL
Match: A0A0A0LJ69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.1e-54
Identity = 122/175 (69.71%), Postives = 138/175 (78.86%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTRVSNEFHLQN-AAVYGGSHGGLLQTPPRFFSVPSIHSHQLLP 60
           MADPYFLDR+ ++G+  TR+SN FHL+N AAV G SHGGLLQTPPRF S PS H+HQ  P
Sbjct: 1   MADPYFLDRSPSTGHNLTRISNHFHLENLAAVSGFSHGGLLQTPPRFLSAPSFHTHQSYP 60

Query: 61  FIQQQQQQPPPLLTPPPI-----LRPHRTLSSQPRSSHSLKKSKSIKRDKDSAAVVDRRV 120
           F QQ +   PPLL PPP      +RPHR+L SQPR SHSLKKSKS +++KDSAAVVDRR+
Sbjct: 61  FFQQNKS--PPLLPPPPTPTQSNIRPHRSLPSQPR-SHSLKKSKSTRKEKDSAAVVDRRI 120

Query: 121 PSRTFSSP-AAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTK-LNCN 168
           PSRT SS  A AKRVVRVEE +KLSGC F VISPPPSSLPLPKF +RP K LNCN
Sbjct: 121 PSRTISSAGAGAKRVVRVEELEKLSGCFFTVISPPPSSLPLPKFSMRPAKALNCN 172

BLAST of Carg17208 vs. ExPASy TrEMBL
Match: A0A6J1CF43 (uncharacterized protein LOC111010153 OS=Momordica charantia OX=3673 GN=LOC111010153 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 122/179 (68.16%), Postives = 134/179 (74.86%), Query Frame = 0

Query: 1   MADPYFLDRTSTSGYKPTR---VSN---EFHLQN-AAVYGGSHGGLLQTPPRFFSVPS-I 60
           MADPYFLDR   +GY  TR   +SN    ++L+N AA  G +HGGLL+TPPRFFS PS I
Sbjct: 1   MADPYFLDRPPPAGYNQTRSLPISNNNYNYNLENIAAAAGNNHGGLLRTPPRFFSAPSII 60

Query: 61  HSHQLLPFIQQQQQQPPPLLTPPPILRPHRTLSSQPRSSHSL--KKSKSIKRDKD--SAA 120
           H HQ  PFI   Q QPPPLL PPPILRPHR+L SQP  SHSL  KKSKS KR +   S A
Sbjct: 61  HGHQFHPFI---QLQPPPLL-PPPILRPHRSLPSQPARSHSLNPKKSKSAKRSEKSFSPA 120

Query: 121 VVDRRVPSRTFSSPAAAKRVVRVEEFDKLSGCLFAVISPPPSSLPLPKFCLRPTKLNCN 168
           VVDRR  SRT S+ AAAKRVV+VEE D LSGCLFA +SPPPSSLPLPKFCLRP KLNCN
Sbjct: 121 VVDRRAASRTSSTAAAAKRVVKVEELD-LSGCLFA-LSPPPSSLPLPKFCLRPAKLNCN 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608604.12.6e-88100.00hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0063295.13.9e-5569.94uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa][more]
XP_008466665.11.1e-5469.36PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo] >TYK31480.1 uncha... [more]
KGN60046.14.3e-5469.71hypothetical protein Csa_001363 [Cucumis sativus][more]
XP_022139188.11.1e-4668.16uncharacterized protein LOC111010153 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VBL81.9e-5569.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E7715.4e-5569.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CRS45.4e-5569.36uncharacterized protein LOC103504021 OS=Cucumis melo OX=3656 GN=LOC103504021 PE=... [more]
A0A0A0LJ692.1e-5469.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G873260 PE=4 SV=1[more]
A0A6J1CF435.5e-4768.16uncharacterized protein LOC111010153 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17208-RACarg17208-RAmRNA