Carg16991 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16991
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L18
Location	Carg_Chr11: 6921996 .. 6924297 (+)
RNA-Seq Expression	Carg16991
Synteny	Carg16991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTCATTCACTGCCTCCTTTGTTTAAGTTTCTTCCTTCTAGGCCTCATTTTTGTGTTTCTCTTTCCTTGCGGTGGTTAGGGTATTGATCTTGTAGCGGGAGGTAAGAGCAAGAAGACCAAGAGGACCGCGCCCAAATCTGATGATATCTACCTCAACTTACTCGTCAAGGTACTTCCTAAGCGCGATTTCCCATTCATAGCCACTTTCGTTTCATCTACCGGTGCTTAAAAATATAATATGCTTGATTTTTGAAGGGTTTGCTTTATTTTGGTTCTTGATTGCGGAGCTCGTGTAAATATAGTATTGTGTTGAAATGTCTACATTGAAAGTCAATTGAAATGCCCCTCGGTTGGTTTTTTTCGGGTTCTTATATAAGTCATTTTTTCCCCCTTATTTGATTCTCCCTCTATATTTCTTGTGCTCGTCTAATCTGTTTGTGGATGCCTAATTTTGTTTTTCGAATGAATTGGTTCGATGCTGGTCTTTCTGCTTTGATGATATCTGTGAATCCCAGCTCATGATGAGACCTTTCGTAGGTCGGGGAATAGTCTTTACCCACAATATCTGAGCCTTAAGTCCAGTTACATTGTCTTTATTTTCATTTTAACTATTATCAGTAACATGTTTTCGCTGTTGAAGTTAGTTTGTACACAAATGTTAGTGCCTTCTGTAACTGCGTTTGCTTAGCTGTTCTTATGCTGCTACCTATATTATTGACCTTCTTAGGCACTAAATGTAATTATATATTAATAACAATATGCCATACTTTCAATCTTTTGTTTTGTTTCCTTCGGAAAGTTAAAAGGTTCCCAGTGATGATTAACTTGACCATGCTAATACTGATCACTTTGTGATTAATCTTTTCTTTAATAGTTCTGAGGGAACTGACTCCAAGGTTAAAGTTTTTGTGCTCATTTGCATTTGTTTCACTTGAGTGGGATGGGTGTACAGTGTATATCTTTGGTTCATGCTTTTGTTATTTTTTCCATTCAAGTAGAAATATTTCTATGCAGGTCGATCATTATCTCCCTTCTGCAATGAAGCCCTTTTAAACTGTTCAATTTGTTGTTTCTTTTTTAGATCATAAGGACTCTGAACATATGCCTTTAGAATGTAAAGTTTTGTACTTTTTGGTTTGACTTTCTCTAGGAGTCTTCTAATCATGTCTGTTTATGTGCAATTTTGTAATATCTAATGTTAGTTCTCTATGTAATCTGGAAAGAGAAGCTTATTGTGTGGGCATTTTCTTGAATAGAGTCATTCTGTTTGCCTTCAAAAACACATGTTTCACCTAACTTGTATTGACTAATGAAGTGATTTCTTGCTTTTCTTTTCAGCTCTACCGCTTCCTTGTTCGTCGTACTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGATTGTTCATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGTTAGTTTCATCATGTAATATTGTAAGTTCATTTTGGTTGTTTGTAACTGATTGTGCATGCTGGGACGTCTAAAACCTCTTATATTTGTTGGTAATGTAATAGGAAAGCAAAATTGCCGTTGTTGTTGGGACTATTACTGATGATATTCGCGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGTTTGACATTTGATCAGCTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTATGAATGTTTTCATGTTCCAAGTTATTAGGCCACAACTTTCACATTCTTGATGAATGTGGGGAAAAATTAGAGAGTTTCAGGCTATGCCTTAGAGATGTATATAGGGATTTGAATAATCTGTTGGCTCCATTTTTATTATTTTTGGGTTCATCTACAGGTTCTCCTTAGAGGTTGTAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGCCCCACAGCCACTCCAAGCCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGGGTTTGATTCCATCATATTTTCCAGGCTAATTCAATCGTTGTGTGTTTTTCTGAACTCAATATCGAAATTTTGCTAGATTTTAGTTACTTCAGTTGACTGTTTTGTCATAATATTGTTGATTAGGAATTTTGATTCAATGGCATTCAGCCAGACTTTATTGAGTTCCTTTGGTTTGAGTTTCATTGAAATATGAGCAAGTTTTACCTTGATTTTCATTAAAATCATATTAACATC

mRNA sequence

CTACTCATTCACTGCCTCCTTTGTTTAAGTTTCTTCCTTCTAGGCCTCATTTTTGTGTTTCTCTTTCCTTGCGGTGGTTAGGGTATTGATCTTGTAGCGGGAGGTAAGAGCAAGAAGACCAAGAGGACCGCGCCCAAATCTGATGATATCTACCTCAACTTACTCGTCAAGCTCTACCGCTTCCTTGTTCGTCGTACTGGAAGCAATTTCAATGCTGTGATTCTCAAGCGATTGTTCATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGCAAAATTGCCGTTGTTGTTGGGACTATTACTGATGATATTCGCGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGTTTGACATTTGATCAGCTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTCCTTAGAGGTTGTAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGCCCCACAGCCACTCCAAGCCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGGGTTTGATTCCATCATATTTTCCAGGCTAATTCAATCGTTGTGTGTTTTTCTGAACTCAATATCGAAATTTTGCTAGATTTTAGTTACTTCAGTTGACTGTTTTGTCATAATATTGTTGATTAGGAATTTTGATTCAATGGCATTCAGCCAGACTTTATTGAGTTCCTTTGGTTTGAGTTTCATTGAAATATGAGCAAGTTTTACCTTGATTTTCATTAAAATCATATTAACATC

Coding sequence (CDS)

ATGAGCAGGGTCAACAAGCCTCCACTTTCTCTCTCTAGGCTTATCCAGTTCATGAAAGGAAAGGAAAGCAAAATTGCCGTTGTTGTTGGGACTATTACTGATGATATTCGCGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGATTTACAGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGTTTGACATTTGATCAGCTTGCTTTGAGGGCTCCTCTGGGTCAGAACACGGTTCTCCTTAGAGGTTGTAAGAACTCCAGAGAGGCCGTGAAGCATTTTGGTCCAGCACCAGGTGTGCCCCACAGCCACTCCAAGCCTTATGTGAGGTCCAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGTTACAGGGTTTGA

Protein sequence

MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRV

Homology

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BLAST of Carg16991 vs. NCBI nr
Match: KAG7022359.1 (60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 121 ERARGKRNSRGYRV 134

[Close]

BLAST of Carg16991 vs. NCBI nr
Match: KAG6588563.1 (60S ribosomal protein L18-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261.2 bits (666), Expect = 5.1e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYR 134
           ERARGKRNSRGYR
Sbjct: 174 ERARGKRNSRGYR 186

[Close]

BLAST of Carg16991 vs. NCBI nr
Match: XP_023531430.1 (60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 81  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 140

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 141 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 200

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 201 ERARGKRNSRGYRV 214

[Close]

BLAST of Carg16991 vs. NCBI nr
Match: XP_022931687.1 (60S ribosomal protein L18-2-like [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg16991 vs. NCBI nr
Match: XP_022969995.1 (60S ribosomal protein L18-2 [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 81  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 140

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 141 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 200

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 201 ERARGKRNSRGYRV 214

[Close]

BLAST of Carg16991 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 115/134 (85.82%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL++FM GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg16991 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL++FM GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg16991 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.4e-56
Identity = 108/134 (80.60%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VN+PPLSLSRLI++M+GKE KI VVVG +TDDIRVY+VP +KV AL+FTETARARI+
Sbjct: 51  MSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQ 110

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALR PL  +TVLLRG KN+REAVKHFGPAPGVPHSH+KPYVRSKGRKF
Sbjct: 111 KAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKF 170

Query: 121 ERARGKRNSRGYRV 135
           E+ARG+R SRG+RV
Sbjct: 171 EKARGRRKSRGFRV 183

[Close]

BLAST of Carg16991 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 1.8e-50
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 54  MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 113

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 114 KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 173

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 174 IEIARGRRRSRGFKV 188

[Close]

BLAST of Carg16991 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-47
Identity = 95/135 (70.37%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMK--GKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARAR 60
           MSR+NKP +SL+R+ +FMK  G+E+ IAVVVGT+TDD+R+Y+VP L++ ALR TE ARAR
Sbjct: 53  MSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARAR 112

Query: 61  IEKAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGR 120
           I KAGGE LTFDQLA++AP G+ TVL++G +NSREA +HFGPAPGVPHSH+KPYVRSKGR
Sbjct: 113 ILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGR 172

Query: 121 KFERARGKRNSRGYR 134
           KFERARG+R SR Y+
Sbjct: 173 KFERARGRRKSRRYK 187

[Close]

BLAST of Carg16991 vs. ExPASy TrEMBL
Match: A0A6J1I1I5 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.1e-66
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 81  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 140

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 141 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 200

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 201 ERARGKRNSRGYRV 214

[Close]

BLAST of Carg16991 vs. ExPASy TrEMBL
Match: A0A6J1EUD5 (60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.1e-66
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg16991 vs. ExPASy TrEMBL
Match: A0A5A7U942 (60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004150 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg16991 vs. ExPASy TrEMBL
Match: A0A1S3BPL9 (60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSKVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg16991 vs. ExPASy TrEMBL
Match: A0A6J1HVV8 (60S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.5e-65
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MSRVNKPPLSLSRLIQF KGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE
Sbjct: 54  MSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           ERARGKRNSRGYRV
Sbjct: 174 ERARGKRNSRGYRV 187

[Close]

BLAST of Carg16991 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 115/134 (85.82%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL++FM GKE KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHSHSKPYVR+KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg16991 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 227.3 bits (578), Expect = 7.5e-60
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL++FM GK+ KIAV+VGTITDD+RV+E+PA+KV ALRFTE ARARIE
Sbjct: 54  MSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIE 113

Query: 61  KAGGECLTFDQLALRAPLGQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKF 120
           KAGGECLTFDQLALRAPLGQNTVLLRG KNSREAVKHFGPAPGVPHS++KPYVR KGRKF
Sbjct: 114 KAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKF 173

Query: 121 ERARGKRNSRGYRV 135
           E+ARGKR SRG++V
Sbjct: 174 EKARGKRKSRGFKV 187

[Close]

BLAST of Carg16991 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Carg16991 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-51
Identity = 99/135 (73.33%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSRVNKPPLSLSRLIQFMKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIE 60
           MS+VNK PLSLSRL+++M GK+ KIAV+VGT+TDD+R+ +VPAL V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 61  KAGGECLTFDQLALRAPL-GQNTVLLRGCKNSREAVKHFGPAPGVPHSHSKPYVRSKGRK 120
           KAGGECLTFDQLAL  P   +NTVLLRG KN+REAVKHFGPAPGVPHSH+KPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 121 FERARGKRNSRGYRV 135
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of Carg16991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022359.1	1.0e-66	100.00	60S ribosomal protein L18-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588563.1	5.1e-66	100.00	60S ribosomal protein L18-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023531430.1	1.5e-65	99.25	60S ribosomal protein L18-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931687.1	1.5e-65	99.25	60S ribosomal protein L18-2-like [Cucurbita moschata]	[more]
XP_022969995.1	1.5e-65	99.25	60S ribosomal protein L18-2 [Cucurbita maxima]	[more]

BLAST of Carg16991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42791	1.9e-60	85.82	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
Q940B0	1.1e-58	83.58	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
O65729	6.4e-56	80.60	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	1.8e-50	73.33	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4PM04	1.1e-47	70.37	60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1	[more]

BLAST of Carg16991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1I5	7.1e-66	99.25	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111469018 PE=3 SV=...	[more]
A0A6J1EUD5	7.1e-66	99.25	60S ribosomal protein L18-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437842 P...	[more]
A0A5A7U942	2.7e-65	98.51	60S ribosomal protein L18-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPL9	2.7e-65	98.51	60S ribosomal protein L18-2 OS=Cucumis melo OX=3656 GN=LOC103492145 PE=3 SV=1	[more]
A0A6J1HVV8	3.5e-65	98.51	60S ribosomal protein L18-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467927 PE=...	[more]

BLAST of Carg16991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05590.1	1.4e-61	85.82	ribosomal protein L18	[more]
AT5G27850.1	7.5e-60	83.58	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	1.3e-51	73.33	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	1.3e-51	73.33	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..134 e-value: 3.6E-71 score: 240.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..134
None	No IPR available	PANTHER	PTHR10934:SF18	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..134
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 1..134 e-value: 4.8E-69 score: 231.5
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..134
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16991-RA	Carg16991-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome