Carg16877 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16877
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor MYB4-like
Location	Carg_Chr19: 593133 .. 594709 (+)
RNA-Seq Expression	Carg16877
Synteny	Carg16877

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGGTAAGTTTATATGTCCTTTTACTCAAAACCCATTAAAAAAAATCTAGCTTTTCTATGAACTTAGCCAAGAAATGAGAGGAAAATGCTTTCTAGCTCGATTTTTCTTCGTTTTCTTACGTGGGTTGGCTCGTTTTTTCATAATTTCTTATGGGTTTTAGCAGGATTGTTAAGGTGTGGAAAAAGTTGCAGGCTTCGGTGGATTAATTATCTAAGACCAGACATTAAACGAGGAAATTTAACCAAGGAAGAAGAGGAAACCATTATTAAGCTACATCGAGTGCTTGGAAACAGGTTCGTTTCTCTTTAAATCTAAAAGGGTTATCACTACTCGTAGAAAAACTAAACCTAACGTACCAATTCTGAAAGTGCTACGAAATACCTTTCAACAAGTTACTAATGAGTGAGACTACTAGTTATCGTAGACACGGCTATTTATCATTAACTCTCTGTCTTTCTAGTAGCTTTTCTTCTCTATTGTTTTTTCTTGGAGAGATAGATTCAAACCTACAAATGAAAGAAGGAAAAAAAAAAAAGTTTTCTTAGGTGTTAAGTTATATATTTTCATAGTGAAAAAATCATCGATTTAAGACAGAATATTAATGTCGGTACGAAAACAAATTATTGAACATAGGCGTTATTACGTAGTTGTCTCATAATAATTTAAAAGGTATGTTTTCTTCTAATAACTTTTTGATACAAATTTGTAACATGTTTTGTGCTCTCTCGTACAAACCGCAAAAAACCATCTTTCGCTTGGTTTTTGTCTCGTTCATGCTTTCTCAAGTACAAAACGATTAAAATTGTCAATCACATTATTCTAACCTCTTATGCAAGTTCTCGTGAGTCGGGTGTTCTCGAAAATATATATAGTTTAACCATAGCTAATTAATTGCTTCACATCGATTATTGCATAGACTTTAATCCATTTTATGTCATCATGTGACACTAACGAACAAAACTGACCACATTGAACTTAACAAACAAAACATGTTTTTTGTTTTCAACCAATAATTAAGAATCTACGTTCTTGGTTTTTCCAATAAACTAACATTTTATATGTCCTCTTGATCATAGATGGTCGGCAATTGCAGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

mRNA sequence

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

Coding sequence (CDS)

ATGGTGAGAGCTCCATGCTGTGAGAAAATGGGGCTCAAGAAAGGCCCTTGGACCCCTCAAGAAGACCAGATTCTCATCAATTATATCACTCTCTATGGCCATGGAAATTGGCGAGCCCTCCCAAAGCAATCTGCAAGGTTACCAGGAAGAACCGACAACGAGATAAAAAACGTGTGGAATACCCATTTGAAGAAAAGACAAAATTACGCTGCCGTAAACCGGCCAATCGGCGGCGGCCATGAAGAACCTGCAGCACAACCCTTCAAATTTACGACCTTTCACTCCATGCAGAACCCTGCTTCGGCTTCTTCGCCGCCCCATTGCTCCAGTGAAAGCTCCTCCATTGTCTTGCCGGAGAACGGTGACTTGTCGACGAATAATCTGCCGGAGGCCGACGAAAACTTCTGGGTGGAAGTTTTGGCCGGCGATCAAATCGCCACCGTGGGGAGCCAACAGGGATTTGGAGGTGAAAGCGAAGGACAATTT

Protein sequence

MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWNTHLKKRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGESEGQF

Homology

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: KAG7011267.1 (Transcription factor MYB14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.0 bits (881), Expect = 7.2e-91
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWN 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWN
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSARLPGRTDNEIKNVWN 60

Query: 61  THLKKRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPEN 120
           THLKKRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPEN
Sbjct: 61  THLKKRQNYAAVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPEN 120

Query: 121 GDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGESEGQF 163
           GDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGESEGQF
Sbjct: 121 GDLSTNNLPEADENFWVEVLAGDQIATVGSQQGFGGESEGQF 162

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_022963936.1 (transcription factor MYB4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 315.1 bits (806), Expect = 3.6e-82
Identity = 161/212 (75.94%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNYAA
Sbjct: 61  LRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYAA 120

Query: 121 VNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           VNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE
Sbjct: 121 VNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_022963935.1 (transcription factor MYB4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 4.7e-82
Identity = 161/213 (75.59%), Postives = 162/213 (76.06%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNYA
Sbjct: 61  YLRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYA 120

Query: 121 AVNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 163
           AVNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP
Sbjct: 121 AVNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_023553737.1 (transcription factor MYB4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 3.5e-77
Identity = 152/211 (72.04%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNY A
Sbjct: 61  LRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYTA 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEA 163
           +NR I GG EEPA QPFKFTTFHSMQNPAS SSPPHCS ESSSIVLPENGDLSTNNLPEA
Sbjct: 121 MNRRICGGDEEPATQPFKFTTFHSMQNPASTSSPPHCSRESSSIVLPENGDLSTNNLPEA 180

[Close]

BLAST of Carg16877 vs. NCBI nr
Match: XP_023553736.1 (transcription factor MYB4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 4.5e-77
Identity = 152/212 (71.70%), Postives = 154/212 (72.64%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNY 
Sbjct: 61  YLRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYT 120

Query: 121 AVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           A+NR I GG EEPA QPFKFTTFHSMQNPAS SSPPHCS ESSSIVLPENGDLSTNNLPE
Sbjct: 121 AMNRRICGGDEEPATQPFKFTTFHSMQNPASTSSPPHCSRESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. ExPASy Swiss-Prot
Match: Q7XBH4 (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 68/163 (41.72%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLKKGPWTP+ED++L+ +I  +GHGNWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 115
                                           +ARLPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR----- 120

[Close]

BLAST of Carg16877 vs. ExPASy Swiss-Prot
Match: Q9LNC9 (Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-24
Identity = 74/203 (36.45%), Postives = 96/203 (47.29%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R PCCEK+GLKKGPW+ +ED+ILINYI+L+GH NWRALPK                  
Sbjct: 1   MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR +++ 
Sbjct: 61  LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHS- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSI-VLPENGDLSTNNLPE 144
                    ++   + F  TT   M  P S       S++ S+I  L  N D+S +N   
Sbjct: 121 --------QDQNNKEDFVSTTAAEM--PTSPQQQSSSSADISAITTLGNNNDISNSNKDS 180

[Close]

BLAST of Carg16877 vs. ExPASy Swiss-Prot
Match: Q9SJX8 (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-23
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMG+K+GPWTP+EDQILINYI LYGH NWRALPK                  
Sbjct: 1   MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR----- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPA--SASSPPHCSSESSSIVLPENGD--LSTNN 144
           +++ +  G +         TT     +    +AS     +S ++  +  +N D  +S  +
Sbjct: 121 LSKNLNNGGDTKDVNGINETTNEDKGSVIVDTASLQQFSNSITTFDISNDNKDDIMSYED 180

[Close]

BLAST of Carg16877 vs. ExPASy Swiss-Prot
Match: Q9LTC4 (Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 64/184 (34.78%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWTP+EDQIL+++I  +GH NWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQ 120

Query: 121 VNRPIGGGHE---EPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNL 133
             +P     +   +P ++    T+ +S ++ +  +   + S ES     P   ++S+  L
Sbjct: 121 PAKPKTSNKKKGTKPKSESV-ITSSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTL 180

[Close]

BLAST of Carg16877 vs. ExPASy Swiss-Prot
Match: Q6K1S6 (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.1e-21
Identity = 71/224 (31.70%), Postives = 97/224 (43.30%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWT +ED+IL+ +I  +GH NWRALP+Q                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPRQAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR----- 120
                                           +ARLPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLEPKP 120

Query: 121 ---QNYAAVNR-------PIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIV 161
              +  AA  R        +    + P   P       S    ++A++  +  S +SS  
Sbjct: 121 SSGREAAAPKRKATKKAAAVAVAIDVPTTVPVSPEQSLSTTTTSAATTEEYSYSMASSAD 180

[Close]

BLAST of Carg16877 vs. ExPASy TrEMBL
Match: A0A6J1HHG1 (transcription factor MYB4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464088 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 161/212 (75.94%), Postives = 162/212 (76.42%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNYAA
Sbjct: 61  LRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYAA 120

Query: 121 VNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           VNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE
Sbjct: 121 VNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. ExPASy TrEMBL
Match: A0A6J1HJD6 (transcription factor MYB4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464088 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 161/213 (75.59%), Postives = 162/213 (76.06%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNYA
Sbjct: 61  YLRPDIKRGNLTKEEEETIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYA 120

Query: 121 AVNRPI-GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 163
           AVNRPI GGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP
Sbjct: 121 AVNRPICGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLP 180

[Close]

BLAST of Carg16877 vs. ExPASy TrEMBL
Match: A0A6J1HXE3 (transcription factor MYB4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467116 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.0e-74
Identity = 148/211 (70.14%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSGLLRCGKSCRLRWINY 60

Query: 61  ---------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                            ARLPGRTDNEIKNVWNTHLKKRQNYAA
Sbjct: 61  LRPDIKRGNLTKEEEDTIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYAA 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPEA 163
           +N+PI GG +E AAQPFK TTFHSMQNPASASSP +CS+ESSSIVLPENGDLSTNNLPEA
Sbjct: 121 LNQPICGGDQESAAQPFKLTTFHSMQNPASASSPLYCSTESSSIVLPENGDLSTNNLPEA 180

[Close]

BLAST of Carg16877 vs. ExPASy TrEMBL
Match: A0A6J1HVS4 (transcription factor MYB4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467116 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.6e-74
Identity = 148/212 (69.81%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS---------------- 60
           MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQS                
Sbjct: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQSAGLLRCGKSCRLRWIN 60

Query: 61  ----------------------------------ARLPGRTDNEIKNVWNTHLKKRQNYA 120
                                             ARLPGRTDNEIKNVWNTHLKKRQNYA
Sbjct: 61  YLRPDIKRGNLTKEEEDTIIKLHRVLGNRWSAIAARLPGRTDNEIKNVWNTHLKKRQNYA 120

Query: 121 AVNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNLPE 163
           A+N+PI GG +E AAQPFK TTFHSMQNPASASSP +CS+ESSSIVLPENGDLSTNNLPE
Sbjct: 121 ALNQPICGGDQESAAQPFKLTTFHSMQNPASASSPLYCSTESSSIVLPENGDLSTNNLPE 180

[Close]

BLAST of Carg16877 vs. ExPASy TrEMBL
Match: A0A6J1K4F2 (transcription factor MYB4-like OS=Cucurbita maxima OX=3661 GN=LOC111491095 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 7.1e-60
Identity = 132/228 (57.89%), Postives = 145/228 (63.60%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           MVR+PCCEKMGLKKGPWTP+EDQILINYI LYGHGNWRALPKQ                 
Sbjct: 1   MVRSPCCEKMGLKKGPWTPEEDQILINYINLYGHGNWRALPKQAGLLRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR----- 120
                                           +ARLPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTQQEEETIIKLHQMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRITQNY 120

Query: 121 -----QNYAAVNRPIGGGH------EEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSI 163
                +NY AVNR   GG       EE AAQ +KFTTFHSMQ+  SASSPPHCSSESSS+
Sbjct: 121 ATPQLRNYTAVNRQSYGGDIPAAAGEESAAQSYKFTTFHSMQSCGSASSPPHCSSESSSV 180

[Close]

BLAST of Carg16877 vs. TAIR 10
Match: AT1G06180.1 (myb domain protein 13 )

HSP 1 Score: 111.7 bits (278), Expect = 5.6e-25
Identity = 74/203 (36.45%), Postives = 96/203 (47.29%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R PCCEK+GLKKGPW+ +ED+ILINYI+L+GH NWRALPK                  
Sbjct: 1   MGRRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR +++ 
Sbjct: 61  LRPDIKRGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLHHS- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPASASSPPHCSSESSSI-VLPENGDLSTNNLPE 144
                    ++   + F  TT   M  P S       S++ S+I  L  N D+S +N   
Sbjct: 121 --------QDQNNKEDFVSTTAAEM--PTSPQQQSSSSADISAITTLGNNNDISNSNKDS 180

[Close]

BLAST of Carg16877 vs. TAIR 10
Match: AT2G31180.1 (myb domain protein 14 )

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-24
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMG+K+GPWTP+EDQILINYI LYGH NWRALPK                  
Sbjct: 1   MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR----- 120

Query: 121 VNRPIGGGHEEPAAQPFKFTTFHSMQNPA--SASSPPHCSSESSSIVLPENGD--LSTNN 144
           +++ +  G +         TT     +    +AS     +S ++  +  +N D  +S  +
Sbjct: 121 LSKNLNNGGDTKDVNGINETTNEDKGSVIVDTASLQQFSNSITTFDISNDNKDDIMSYED 180

[Close]

BLAST of Carg16877 vs. TAIR 10
Match: AT3G23250.1 (myb domain protein 15 )

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-22
Identity = 64/184 (34.78%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M RAPCCEKMGLK+GPWTP+EDQIL+++I  +GH NWRALPKQ                 
Sbjct: 1   MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKRQNYAA 120
                                           +A+LPGRTDNEIKNVW+THLKKR     
Sbjct: 61  LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLEDYQ 120

Query: 121 VNRPIGGGHE---EPAAQPFKFTTFHSMQNPASASSPPHCSSESSSIVLPENGDLSTNNL 133
             +P     +   +P ++    T+ +S ++ +  +   + S ES     P   ++S+  L
Sbjct: 121 PAKPKTSNKKKGTKPKSESV-ITSSNSTRSESELADSSNPSGESLFSTSPSTSEVSSMTL 180

[Close]

BLAST of Carg16877 vs. TAIR 10
Match: AT4G05100.1 (myb domain protein 74 )

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20
Identity = 50/116 (43.10%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1   MVRAPCCEKM-GLKKGPWTPQEDQILINYITLYGHGNWRALPKQ---------------- 60
           M R+PCCEK  GLKKGPWTP+EDQ LI+YI ++G+GNWR LPK                 
Sbjct: 1   MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

Query: 61  ---------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                            +ARLPGRTDNEIKN WNTH++KR
Sbjct: 61  YLRPDIKRGRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKR 116

[Close]

BLAST of Carg16877 vs. TAIR 10
Match: AT3G02940.1 (myb domain protein 107 )

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-20
Identity = 47/115 (40.87%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 1   MVRAPCCEKMGLKKGPWTPQEDQILINYITLYGHGNWRALPKQ----------------- 60
           M R+PCC++ GLKKGPWTP+EDQ LIN+I  +GHG+WRALPKQ                 
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query: 61  --------------------------------SARLPGRTDNEIKNVWNTHLKKR 67
                                           +  LPGRTDNEIKN WNTH++K+
Sbjct: 61  LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKK 115

The following BLAST results are available for this feature:

BLAST of Carg16877 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011267.1	7.2e-91	100.00	Transcription factor MYB14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022963936.1	3.6e-82	75.94	transcription factor MYB4-like isoform X2 [Cucurbita moschata]	[more]
XP_022963935.1	4.7e-82	75.59	transcription factor MYB4-like isoform X1 [Cucurbita moschata]	[more]
XP_023553737.1	3.5e-77	72.04	transcription factor MYB4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023553736.1	4.5e-77	71.70	transcription factor MYB4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16877 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XBH4	1.2e-24	41.72	Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ...	[more]
Q9LNC9	7.9e-24	36.45	Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=1 SV=1	[more]
Q9SJX8	6.7e-23	35.53	Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1	[more]
Q9LTC4	2.1e-21	34.78	Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1	[more]
Q6K1S6	8.1e-21	31.70	Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=...	[more]

BLAST of Carg16877 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHG1	1.7e-82	75.94	transcription factor MYB4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1HJD6	2.3e-82	75.59	transcription factor MYB4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1HXE3	5.0e-74	70.14	transcription factor MYB4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HVS4	6.6e-74	69.81	transcription factor MYB4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1K4F2	7.1e-60	57.89	transcription factor MYB4-like OS=Cucurbita maxima OX=3661 GN=LOC111491095 PE=4 ...	[more]

BLAST of Carg16877 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06180.1	5.6e-25	36.45	myb domain protein 13	[more]
AT2G31180.1	4.7e-24	35.53	myb domain protein 14	[more]
AT3G23250.1	1.5e-22	34.78	myb domain protein 15	[more]
AT4G05100.1	1.9e-20	43.10	myb domain protein 74	[more]
AT3G02940.1	3.2e-20	40.87	myb domain protein 107	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..65 e-value: 9.1E-12 score: 55.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..63 score: 10.580304
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..63 e-value: 2.51184E-13 score: 58.741
None	No IPR available	GENE3D	1.10.10.60		coord: 11..68 e-value: 1.8E-20 score: 74.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..118
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..46
None	No IPR available	PANTHER	PTHR10641:SF1272	TRANSCRIPTION FACTOR MYB15-3	coord: 44..149
None	No IPR available	PANTHER	PTHR10641:SF1272	TRANSCRIPTION FACTOR MYB15-3	coord: 1..46
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 44..149
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..63 e-value: 1.2E-12 score: 47.8
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..67 score: 19.812517
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 8..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16877-RA	Carg16877-RA	mRNA