Carg16856 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16856
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PRA1 family protein
Location	Carg_Chr19: 330444 .. 331455 (-)
RNA-Seq Expression	Carg16856
Synteny	Carg16856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCCTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGTAAGCGCAATCTCAACTACTTTCGTGTTAATTACACCTTCATCGTCTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTATTTCCTTGATTGTCTTCTTGATCGTGTTCGTTGCCTGGTTCTTCCTTTATTTTTTCACGGATGGTCCATTGGTGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTGTTGGCTGTGCTTGGATTGGTTACGATTGTCGCTTTGGTGTTCACGGATGTGTCGTTGAACGTATTGATTTCGGTTTTGATTGGGGTTTTTCTTGTTTTGATACATGCCGCCTTTAGGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGATTGCTTTCGGTTGTTGGCAGCAGGTAAATCCCTGGTTCATAGATTCTAGGTTACCAACGATGATCTTGCCTTGTCCGATCCAAGTTCTTCGTGCCACAATTCCAATGAGTATTAGATATCAATCTTTTCTCTCTAGCTATCACTTGGAGATCCGGTTTGATACCACTGATTATTTTAGGATGATTCTTTTATTACCAATTAAGTTTGAATGAGCATTTGGGTGTGATTAGCTGCAATGTTTTGGGTTTGAAGTGTTCTTTACTTTTGGAAAGATGAAATTTCAAACAGTAGATATCAATGTTGGGTTTGAATGTCCTGTTAATGTATACTATGTTTGTCTGCCATTTCATGTTGTTTCTGTGCATCATCTTGGAACATTTCTGGGTATGTTTGTAGATTCATATGAACTATAATGGTGTGTTCCTGGCTCCAAATTTAGTCTCATCATTTGCTCTAAATTGTATGTTGTTGATCTTGATGATTCAGGTTGATTGTGAAGAGTAGCTACTAG

mRNA sequence

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCCTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGTAAGCGCAATCTCAACTACTTTCGTGTTAATTACACCTTCATCGTCTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTATTTCCTTGATTGTCTTCTTGATCGTGTTCGTTGCCTGGTTCTTCCTTTATTTTTTCACGGATGGTCCATTGGTGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTGTTGGCTGTGCTTGGATTGGTTACGATTGTCGCTTTGGTGTTCACGGATGTGTCGTTGAACGTATTGATTTCGGTTTTGATTGGGGTTTTTCTTGTTTTGATACATGCCGCCTTTAGGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGATTGCTTTCGGTTGTTGGCAGCAGGTTGATTGTGAAGAGTAGCTACTAG

Coding sequence (CDS)

ATGGCCTCTGTTCAGCCAACTCCATATGCCTTCTCTGAAACTCCCATCCTATCCCGTTTCGCCACTTTACGGCCATGGCGGGAGCTTCTCCAGCCGCCGTCCTCCTTCACCCGCCCTTCATCCATTTCCGAAGCGACCATTCGATGTAAGCGCAATCTCAACTACTTTCGTGTTAATTACACCTTCATCGTCTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTATTTCCTTGATTGTCTTCTTGATCGTGTTCGTTGCCTGGTTCTTCCTTTATTTTTTCACGGATGGTCCATTGGTGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTGTTGGCTGTGCTTGGATTGGTTACGATTGTCGCTTTGGTGTTCACGGATGTGTCGTTGAACGTATTGATTTCGGTTTTGATTGGGGTTTTTCTTGTTTTGATACATGCCGCCTTTAGGGTTACAGAGGATTTGTATATTGACGAGCAAGAAGTCGCCGATGGCGGATTGCTTTCGGTTGTTGGCAGCAGGTTGATTGTGAAGAGTAGCTACTAG

Protein sequence

MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKSSY

Homology

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BLAST of Carg16856 vs. NCBI nr
Match: KAG7011248.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.6 bits (849), Expect = 4.1e-87
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60
           MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY
Sbjct: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60

Query: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120
           TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT
Sbjct: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120

Query: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKS 180
           IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKS
Sbjct: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKS 180

Query: 181 SY 183
           SY
Sbjct: 181 SY 182

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BLAST of Carg16856 vs. NCBI nr
Match: KAG6571486.1 (PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.8 bits (813), Expect = 6.2e-83
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60
           MASVQPTPYAFSETPILSRFATL+PWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY
Sbjct: 1   MASVQPTPYAFSETPILSRFATLQPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60

Query: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120
           TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT
Sbjct: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120

Query: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 176
           IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR
Sbjct: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 175

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BLAST of Carg16856 vs. NCBI nr
Match: XP_022963514.1 (PRA1 family protein E-like [Cucurbita moschata])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60
           MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSF RPSSISEATIRCKRNLNYFRVNY
Sbjct: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFIRPSSISEATIRCKRNLNYFRVNY 60

Query: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120
           TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT
Sbjct: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120

Query: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 176
           IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR
Sbjct: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 175

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BLAST of Carg16856 vs. NCBI nr
Match: XP_023554093.1 (PRA1 family protein E-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60
           MASVQPTPYAFSE PILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY
Sbjct: 1   MASVQPTPYAFSEAPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60

Query: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120
           TFIVLLILFLSLLWHP+SLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT
Sbjct: 61  TFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120

Query: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 176
           IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR
Sbjct: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 175

[Close]

BLAST of Carg16856 vs. NCBI nr
Match: XP_022967499.1 (PRA1 family protein E-like [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 3.8e-80
Identity = 171/183 (93.44%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60
           MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSFTRPSSISEATIRCKRN
Sbjct: 1   MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60

Query: 61  LNYFRVNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVV 120
           LNYFRVNYTFIVLLILFLSLLWHP+SLIVFLIVFVAWFFLYFFTDGPLVV+NRVVDDRVV
Sbjct: 61  LNYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFTDGPLVVYNRVVDDRVV 120

Query: 121 LAVLGLVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVV 176
           LAVLGLVTIVALV+TDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGG+LSVV
Sbjct: 121 LAVLGLVTIVALVYTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGMLSVV 180

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BLAST of Carg16856 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 79/167 (47.31%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 18  SRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPI 77
           S   TLRPWRE+L   S+ + P    EA    K N++YFR NY   VL I+FL L++HP+
Sbjct: 42  SMITTLRPWREILD-LSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPM 101

Query: 78  SLIVFLIVFVAWFFLYFFTDG--PLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 137
           S+I F++VF+ W  LYF  D    +V+  + VDD++VL +L LVT++ALV+TDV  NVL+
Sbjct: 102 SMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLV 161

Query: 138 SVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKSSY 183
           S++IG+ +V  H AFR T+DL++DE+    GGL+S  GS     SSY
Sbjct: 162 SLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS-AGSGNRPPSSY 206

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BLAST of Carg16856 vs. ExPASy Swiss-Prot
Match: Q9FLB6 (PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-25
Identity = 75/149 (50.34%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 24  RPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPISLIVFL 83
           RPW EL+   S+ +RP S+++A  R +RNL YF+VNY  IV L+L LSLL HP SL+V L
Sbjct: 48  RPWLELVD-RSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLL 107

Query: 84  IVFVAWFFLYFF--TDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLISVLIGV 143
            +F AW FLY F  +D PLVV  R   DR  L VL ++TIV +  T V   +  +++IG 
Sbjct: 108 CLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGF 167

Query: 144 FLVLIHAAFRVTEDLYIDEQEVADGGLLS 171
            +V +H AFRV EDL++D+QE A+ GLLS
Sbjct: 168 GIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

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BLAST of Carg16856 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-25
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 16  ILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWH 75
           I +  AT R WR +     S   P  +S+A  R K NL YFR+NY  +VL+++F SL+WH
Sbjct: 29  IKAGLATRRAWRVMFD-FHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWH 88

Query: 76  PISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 135
           P SLIVF ++ V W FLYF  D P+ +F   +DDR VL VL ++T+V L+ T+ + N++ 
Sbjct: 89  PTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVG 148

Query: 136 SVLIGVFLVLIHAAFRVTEDLYIDEQ 162
           +++ G  LVLIH+  R TEDL++DE+
Sbjct: 149 ALVTGAVLVLIHSVVRKTEDLFLDEE 173

[Close]

BLAST of Carg16856 vs. ExPASy Swiss-Prot
Match: Q9SIY7 (PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 24  RPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPISLIVFL 83
           RPW EL+   SSF RP S++++  R ++NL YF+VNY+ IV L+L  SLL HP SL+V L
Sbjct: 47  RPWLELVD-RSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLL 106

Query: 84  IVFVAWFFLYFF--TDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLISVLIGV 143
            +  +W FLY F  +D PLV+F R   DR  L  L L TIV +  T V   +  ++ IG+
Sbjct: 107 SLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGI 166

Query: 144 FLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGS 175
            +V +H AFRV +DL++DEQE A+ GLLS +G+
Sbjct: 167 AIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGN 198

[Close]

BLAST of Carg16856 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-24
Identity = 78/162 (48.15%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 16  ILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWH 75
           I S  AT RPW+ +     S T P    +A  R K NL YFR NY   VL ILFLSLL+H
Sbjct: 29  IKSGLATRRPWKSMFD-FESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYH 88

Query: 76  PISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 135
           P SLIV  I+ V W FLYF  D PLVVF   +DDR VL  L ++T+V L+ T  + N+L 
Sbjct: 89  PTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILG 148

Query: 136 SVLIGVFLVLIHAAFRVTEDLYIDEQEVA---DGGLLSVVGS 175
           S+L    LVLIHAA R +++L++DE+  A     GL+S   S
Sbjct: 149 SLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMSYPSS 189

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BLAST of Carg16856 vs. ExPASy TrEMBL
Match: A0A6J1HKD9 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.1e-83
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNY 60
           MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSF RPSSISEATIRCKRNLNYFRVNY
Sbjct: 1   MASVQPTPYAFSETPILSRFATLRPWRELLQPPSSFIRPSSISEATIRCKRNLNYFRVNY 60

Query: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120
           TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT
Sbjct: 61  TFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVT 120

Query: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 176
           IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR
Sbjct: 121 IVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSR 175

[Close]

BLAST of Carg16856 vs. ExPASy TrEMBL
Match: A0A6J1HWW4 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 171/183 (93.44%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSRF--------ATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60
           MASVQPTPYAFSETPILSRF        ATLRPWRELLQPPSSFTRPSSISEATIRCKRN
Sbjct: 1   MASVQPTPYAFSETPILSRFRPASHSIYATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60

Query: 61  LNYFRVNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVV 120
           LNYFRVNYTFIVLLILFLSLLWHP+SLIVFLIVFVAWFFLYFFTDGPLVV+NRVVDDRVV
Sbjct: 61  LNYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFTDGPLVVYNRVVDDRVV 120

Query: 121 LAVLGLVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVV 176
           LAVLGLVTIVALV+TDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGG+LSVV
Sbjct: 121 LAVLGLVTIVALVYTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGMLSVV 180

[Close]

BLAST of Carg16856 vs. ExPASy TrEMBL
Match: A0A0A0LKV0 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.8e-67
Identity = 148/182 (81.32%), Postives = 159/182 (87.36%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSR--------FATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60
           M+S QP+PY F+ET ILSR        +ATLRPWRELLQP SSFTRPSS+ EA IRCKRN
Sbjct: 1   MSSNQPSPYGFTETSILSRARAASDSLYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LNYFRVNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVV 120
           L YFRVNYTFIVLLILFLSLLWHP+SLIVFLIVFVAWFFLYFF D PL VF+RVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFHRVVDDRVV 120

Query: 121 LAVLGLVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVV 175
           L +LG+VTI ALV TDVSLNVLIS+LIGVFLVLIHA  RVT+DLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLISILIGVFLVLIHAGSRVTDDLYIDEQEVADGGLLSVV 180

[Close]

BLAST of Carg16856 vs. ExPASy TrEMBL
Match: A0A6J1EWX4 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111437276 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.0e-66
Identity = 145/177 (81.92%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPIL---SRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFR 60
           M++V P+PYAF+ET IL   S +ATLRPWRELLQP SSFTRPSS+ EA+IRCKRNL YFR
Sbjct: 1   MSTVHPSPYAFTETSILTSDSAYATLRPWRELLQPLSSFTRPSSLGEASIRCKRNLKYFR 60

Query: 61  VNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLG 120
            NYT +VLLILF SLLWHP+SLIVFLIVFVAWFFLYFF D PL +F+RVVDDRVVLAVLG
Sbjct: 61  SNYTLVVLLILFFSLLWHPVSLIVFLIVFVAWFFLYFFRDQPLELFHRVVDDRVVLAVLG 120

Query: 121 LVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGS 175
           LVTIV LV TDVS NVL+S+LIGVFLVL HAAFRVTEDLYIDEQEVADGGLLSVVGS
Sbjct: 121 LVTIVVLVLTDVSFNVLLSILIGVFLVLTHAAFRVTEDLYIDEQEVADGGLLSVVGS 177

[Close]

BLAST of Carg16856 vs. ExPASy TrEMBL
Match: A0A5A7UNI5 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001030 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.3e-66
Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 0


Query: 1   MASVQPTPYAFSETPILSR--------FATLRPWRELLQPPSSFTRPSSISEATIRCKRN 60
           M+S QP PY F+ET ILSR        +ATLRPWRELLQP SSFTRPSS+ EA IRCKRN
Sbjct: 1   MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LNYFRVNYTFIVLLILFLSLLWHPISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVV 120
           L YFRVNYTFIVLLILFLSLLWHP+SLIVFL+VFVAWFFLYFF D PL VFNRVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLVVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120

Query: 121 LAVLGLVTIVALVFTDVSLNVLISVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVV 175
           L +LG+VTI ALV TDVSLNVL+S+LIGVFLVL+HA  RV++DLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLVSILIGVFLVLVHAGSRVSDDLYIDEQEVADGGLLSVV 180

[Close]

BLAST of Carg16856 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 131.0 bits (328), Expect = 1.0e-30
Identity = 79/167 (47.31%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 18  SRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPI 77
           S   TLRPWRE+L   S+ + P    EA    K N++YFR NY   VL I+FL L++HP+
Sbjct: 42  SMITTLRPWREILD-LSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPM 101

Query: 78  SLIVFLIVFVAWFFLYFFTDG--PLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 137
           S+I F++VF+ W  LYF  D    +V+  + VDD++VL +L LVT++ALV+TDV  NVL+
Sbjct: 102 SMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLV 161

Query: 138 SVLIGVFLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGSRLIVKSSY 183
           S++IG+ +V  H AFR T+DL++DE+    GGL+S  GS     SSY
Sbjct: 162 SLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS-AGSGNRPPSSY 206

[Close]

BLAST of Carg16856 vs. TAIR 10
Match: AT5G05380.1 (prenylated RAB acceptor 1.B3 )

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-26
Identity = 75/149 (50.34%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 24  RPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPISLIVFL 83
           RPW EL+   S+ +RP S+++A  R +RNL YF+VNY  IV L+L LSLL HP SL+V L
Sbjct: 48  RPWLELVD-RSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLL 107

Query: 84  IVFVAWFFLYFF--TDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLISVLIGV 143
            +F AW FLY F  +D PLVV  R   DR  L VL ++TIV +  T V   +  +++IG 
Sbjct: 108 CLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGF 167

Query: 144 FLVLIHAAFRVTEDLYIDEQEVADGGLLS 171
            +V +H AFRV EDL++D+QE A+ GLLS
Sbjct: 168 GIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

[Close]

BLAST of Carg16856 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-26
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 16  ILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWH 75
           I +  AT R WR +     S   P  +S+A  R K NL YFR+NY  +VL+++F SL+WH
Sbjct: 29  IKAGLATRRAWRVMFD-FHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWH 88

Query: 76  PISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 135
           P SLIVF ++ V W FLYF  D P+ +F   +DDR VL VL ++T+V L+ T+ + N++ 
Sbjct: 89  PTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVG 148

Query: 136 SVLIGVFLVLIHAAFRVTEDLYIDEQ 162
           +++ G  LVLIH+  R TEDL++DE+
Sbjct: 149 ALVTGAVLVLIHSVVRKTEDLFLDEE 173

[Close]

BLAST of Carg16856 vs. TAIR 10
Match: AT2G40380.1 (prenylated RAB acceptor 1.B2 )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 24  RPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWHPISLIVFL 83
           RPW EL+   SSF RP S++++  R ++NL YF+VNY+ IV L+L  SLL HP SL+V L
Sbjct: 47  RPWLELVD-RSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLL 106

Query: 84  IVFVAWFFLYFF--TDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLISVLIGV 143
            +  +W FLY F  +D PLV+F R   DR  L  L L TIV +  T V   +  ++ IG+
Sbjct: 107 SLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGI 166

Query: 144 FLVLIHAAFRVTEDLYIDEQEVADGGLLSVVGS 175
            +V +H AFRV +DL++DEQE A+ GLLS +G+
Sbjct: 167 AIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGN 198

[Close]

BLAST of Carg16856 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 78/162 (48.15%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 16  ILSRFATLRPWRELLQPPSSFTRPSSISEATIRCKRNLNYFRVNYTFIVLLILFLSLLWH 75
           I S  AT RPW+ +     S T P    +A  R K NL YFR NY   VL ILFLSLL+H
Sbjct: 29  IKSGLATRRPWKSMFD-FESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYH 88

Query: 76  PISLIVFLIVFVAWFFLYFFTDGPLVVFNRVVDDRVVLAVLGLVTIVALVFTDVSLNVLI 135
           P SLIV  I+ V W FLYF  D PLVVF   +DDR VL  L ++T+V L+ T  + N+L 
Sbjct: 89  PTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILG 148

Query: 136 SVLIGVFLVLIHAAFRVTEDLYIDEQEVA---DGGLLSVVGS 175
           S+L    LVLIHAA R +++L++DE+  A     GL+S   S
Sbjct: 149 SLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMSYPSS 189

The following BLAST results are available for this feature:

BLAST of Carg16856 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011248.1	4.1e-87	100.00	PRA1 family protein E, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571486.1	6.2e-83	99.43	PRA1 family protein E, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022963514.1	1.1e-82	99.43	PRA1 family protein E-like [Cucurbita moschata]	[more]
XP_023554093.1	1.1e-82	98.86	PRA1 family protein E-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967499.1	3.8e-80	93.44	PRA1 family protein E-like [Cucurbita maxima]	[more]

BLAST of Carg16856 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRR1	1.4e-29	47.31	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
Q9FLB6	3.6e-25	50.34	PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1	[more]
Q9LIC6	6.1e-25	45.21	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9SIY7	1.8e-24	47.71	PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1	[more]
Q9C889	2.3e-24	48.15	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]

BLAST of Carg16856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKD9	5.1e-83	99.43	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111463820 PE=3 SV=1	[more]
A0A6J1HWW4	1.8e-80	93.44	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111466988 PE=3 SV=1	[more]
A0A0A0LKV0	8.8e-67	81.32	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1	[more]
A0A6J1EWX4	2.0e-66	81.92	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111437276 PE=3 SV=1	[more]
A0A5A7UNI5	3.3e-66	79.67	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G...	[more]

BLAST of Carg16856 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08770.1	1.0e-30	47.31	prenylated RAB acceptor 1.E	[more]
AT5G05380.1	2.5e-26	50.34	prenylated RAB acceptor 1.B3	[more]
AT3G13720.1	4.3e-26	45.21	PRA1 (Prenylated rab acceptor) family protein	[more]
AT2G40380.1	1.3e-25	47.71	prenylated RAB acceptor 1.B2	[more]
AT1G55190.1	1.7e-25	48.15	PRA1 (Prenylated rab acceptor) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 19..160 e-value: 2.0E-47 score: 160.4
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 15..177
None	No IPR available	PANTHER	PTHR19317:SF13	PRA1 FAMILY PROTEIN	coord: 15..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16856-RA	Carg16856-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane