Carg16808 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16808
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmitochondrial import inner membrane translocase subunit PAM16 like 2-like
LocationCarg_Chr19: 21544 .. 23880 (+)
RNA-Seq ExpressionCarg16808
SyntenyCarg16808
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCTCTCTACTTTCTTTCTCTTCTCCTCTCATTTGATGGTGGATCGATTTCTAAGATAATGAGAAAATGATATTGAATCAGGAGCGGTTGTATAAACATAATTTATTTTGTTAGTTTTATCTGAAATATTATGTATCCGTCTCCTCCGTTTGGTAATTTGTTTCCAGAATGATTATGGATTATGGGTTTAATTCAAACTTTCATTTCGTTCCCAAATTTTCTCTGGCTGAAGTTTCGTCTAGGGGAATATTGTGTATCCGTCTCCTTCATATTTATTCTGAACATATTGGGTTCTTGATGCTTGTTTCTTGCCCTCTGCGCCTTTTAAAGCCATTTGAAATCAAGCATATTCGAAGTGTGTTTGTATATCTTGTGTCATATTATCTCTCTCTTGAGTGTACATTGATCTTTTTACCAATCAAATCAGTGCTATTCTAATTAGAACTCATGTATTTACTCCTGCTTTGTCGATAACTTCAATTTTGACAGAGGAGAGGAGTAGATATTGTATTGCATAATTTTAAGATCGTCTTATTCAGTTTGAAAACTTCCCATAAGAGAGCCTCTTTGCTTGTATGTATTTGGACAGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTATCGTCAAGCCCTTACGAGTAAGTACACTTTTTATTCCACCCCTGGGTTTTTATCTCTATCGGAAGTTGGCCAGATTGCCTCAATATTATTGTTATTGGTGTCAATTGTTTTTGGATGGCTTGATTGAAACTTGATATGTAGAACAAAAGAAACTTGCACCTTATCTTTGAACTATTAGAAGCTTTAATGTAAATGGGGTAAGTTTGGAAACAAGCATTTTGCCAATGAGAACAAAGCTCTGTGTGCACATAGGATTAATTCTGCTTCAGGTGATATTGGAATAGACATCAAAGATTCATTTTTATTTTTAATGTGCTTGGGGGATGTTAGCATCTTGAAGTTCTATCTTTTACATGTTGTCGTCTTTGTTGGGAGGAAAATCCCACAGATGGCTAATTTAGGTCAAATGATCGTGAGTTTATAGCCTGTGGAATACATTTCATTGGCATGAGTGTTAATGCCTTGGATTATAATCCAAAACTAAGTTCACAACAGCTTAAGCTCACAGTATTGTCTTACTAGTGTGGAGATTCGTGATTCCTTTCGATCTTCCTTCCTCGTTTTTAAAACTTTAATAATGCCTTGTTAGAATCTTCAGTACACCCTTATAAAGAATTTGTTGATCTCCTTCCTGTGATATGTATAAGGGTTTTACATATAAACCTCTTTTTATATTCTACATATTTTATGGGGCTCTTTCCCTTTTCCAAATAGATATGAAAACTTTTTTGATGTCCATCGGGGCCAGTGTTCTTGCTGGCACCTGCCTCAGTACCCCATTCAGGGCTACCTTTTTGGTCAACCTTGAAAGGCGGAATAATATTGTTGGCTCTCGTACCATTTGTAAGAGTCCAAGCCCATGTGATCAGCATATATTGTCTCTTGTAAGTGGAGGTTTTCCTTTGTGTGGCTTCTCCTCAAGAGTTTAAAATTGTGCGCTTTCGAGAGGTTTTCACACCCTTACAGAAGACAAATAGAGAGAAGCTTAACCCTCATTGGATGTACACAAGACTACCTTTATGGGATCTTACATCCATCCTTTACCTTTATGGTCAAGCTTGAAAGACTAAATAAATATCTTCCTAGATCTTTTGAAAAAAAATTGTTATTATTTTCGAGCACGTGGCGTGAGAAGTGATTTACGGACCACAATTTGGTTAGAGATGCTTTCGGTATAGTTGTGTTGTAATCTATTGAACACGTACTTGGATGGAAATGTAGTTGTTTATACAAAGTTTTTTACTTTTAATGAGGGAAAGTTTGATATTGTAGTTGAAGATGATTATGCTGAATAACAAGTCTTTTTCGTGCGGTGTAGATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCGCGGAAACGCCTTGGGAGGAAATTGTGAAGGTCAAATATCTATTGCTTTTCACTAAAATAGTTCCTGCCTTGTATATATTATTATGAATAGGTGTTTGACAATCCTTCCTTCCTATGTTTACAGAAATATGACGCATTGTTTGAAAGGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGA

mRNA sequence

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTATCGTCAAGCCCTTACGAATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCGCGGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCATTGTTTGAAAGGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGA

Coding sequence (CDS)

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTATCGTCAAGCCCTTACGAATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCGCGGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCATTGTTTGAAAGGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTCTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGA

Protein sequence

MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Homology
[Close]
BLAST of Carg16808 vs. NCBI nr
Match: KAG7011201.1 (Mitochondrial import inner membrane translocase subunit PAM16 like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. NCBI nr
Match: XP_022963881.1 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucurbita moschata] >KAG6571434.1 Mitochondrial import inner membrane translocase subunit PAM16 like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQN+VRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNSVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILG+TAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGITAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. NCBI nr
Match: XP_022925423.1 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. NCBI nr
Match: XP_022967548.1 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 4.0e-51
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQN+VRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNSVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDA S
Sbjct: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDARS 116

[Close]
BLAST of Carg16808 vs. NCBI nr
Match: XP_023535168.1 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 6.8e-51
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGV+ ETPWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQSKG+DAPS
Sbjct: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 116

[Close]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match: Q93VV9 (Mitochondrial import inner membrane translocase subunit PAM16 like 2 OS=Arabidopsis thaliana OX=3702 GN=PAM16L2 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-38
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT +T WEEI++KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+S+G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match: Q93W66 (Mitochondrial import inner membrane translocase subunit PAM16 like 1 OS=Arabidopsis thaliana OX=3702 GN=PAM16L1 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGVT ++ W+EI+KKYD LFERNAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match: Q6PBL0 (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio OX=7955 GN=pam16 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-12
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 0 

Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 63  ILGVTAETPWEEIVKKYDALFERN--AQTGSFYLQSKVHRAKERLE 105
           IL ++  TP EEI K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

[Close]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match: Q9C1W5 (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pam16 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 0 

Query: 4   KILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNT---VRRASKVMTEQEARQ 63
           + +   I++GS ++++AFVQAY+Q + NA++    Q     +   VRR    MT QEA  
Sbjct: 5   RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAGS 64

Query: 64  ILGVTAETPWE-EIVKKYDALFERN--AQTGSFYLQSKVHRAKERLETLYQSKGQD 114
           IL +  E+  E E+ K++  +FE N   + GSFYLQSKV RA E+L++    K Q+
Sbjct: 65  ILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQE 118

[Close]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match: Q5XGJ0 (Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis OX=8364 GN=pam16 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA ++VMG  ++ RAF +A RQ  A + A+     +   ++    +   ++ QEA+Q
Sbjct: 2   AKYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQEAQQ 61

Query: 63  ILGVTAETPWEEIVKKYDALFERNAQT--GSFYLQSKVHRAKERLE 105
           IL V+  TP EEI K Y+ LF+ N +   GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLD 106

[Close]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match: A0A6J1HHA5 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cucurbita moschata OX=3662 GN=LOC111464057 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 114/116 (98.28%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQN+VRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNSVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILG+TAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGITAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match: A0A6J1EF52 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cucurbita moschata OX=3662 GN=LOC111432719 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.1e-52
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match: A0A6J1HVD2 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467019 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQN+VRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNSVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDA S
Sbjct: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDARS 116

[Close]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match: A0A6J1IG86 (mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cucurbita maxima OX=3661 GN=LOC111472606 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.3e-51
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGV+ ETPWEEIVKKYDALFE+N QTGSFYLQSKVHRAKERLETLYQSKGQDAPS
Sbjct: 61  ILGVSPETPWEEIVKKYDALFEKNTQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 116

[Close]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match: A0A5D3E4Y7 (Mitochondrial import inner membrane translocase subunit tim16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001310 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.6e-51
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 56  MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 115

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEE+VKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ+KGQDAPS
Sbjct: 116 ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 171

[Close]
BLAST of Carg16808 vs. TAIR 10
Match: AT3G59280.1 (Protein Transporter, Pam16 )

HSP 1 Score: 160.2 bits (404), Expect = 9.8e-40
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT +T WEEI++KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+S+G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]
BLAST of Carg16808 vs. TAIR 10
Match: AT5G61880.1 (Protein Transporter, Pam16 )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGVT ++ W+EI+KKYD LFERNAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]
BLAST of Carg16808 vs. TAIR 10
Match: AT5G61880.2 (Protein Transporter, Pam16 )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 0 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTAETPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGVT ++ W+EI+KKYD LFERNAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

The following BLAST results are available for this feature:
BLAST of Carg16808 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011201.11.2e-52100.00Mitochondrial import inner membrane translocase subunit PAM16 like 2, partial [C... [more]
XP_022963881.14.7e-5298.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucur... [more]
XP_022925423.11.0e-5198.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucur... [more]
XP_022967548.14.0e-5198.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like isofor... [more]
XP_023535168.16.8e-5196.55mitochondrial import inner membrane translocase subunit PAM16 like 2-like [Cucur... [more]
BLAST of Carg16808 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93VV91.4e-3872.41Mitochondrial import inner membrane translocase subunit PAM16 like 2 OS=Arabidop... [more]
Q93W661.6e-3170.37Mitochondrial import inner membrane translocase subunit PAM16 like 1 OS=Arabidop... [more]
Q6PBL08.4e-1248.11Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio OX=... [more]
Q9C1W51.0e-0938.79Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharom... [more]
Q5XGJ01.3e-0944.34Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropica... [more]
BLAST of Carg16808 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HHA52.3e-5298.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cuc... [more]
A0A6J1EF525.1e-5298.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cuc... [more]
A0A6J1HVD21.9e-5198.28mitochondrial import inner membrane translocase subunit PAM16 like 2-like isofor... [more]
A0A6J1IG864.3e-5196.55mitochondrial import inner membrane translocase subunit PAM16 like 2-like OS=Cuc... [more]
A0A5D3E4Y75.6e-5195.69Mitochondrial import inner membrane translocase subunit tim16 OS=Cucumis melo va... [more]
BLAST of Carg16808 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G59280.19.8e-4072.41Protein Transporter, Pam16 [more]
AT5G61880.11.2e-3270.37Protein Transporter, Pam16 [more]
AT5G61880.21.2e-3270.37Protein Transporter, Pam16 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036869Chaperone J-domain superfamilyGENE3D1.10.287.110DnaJ domaincoord: 53..111
e-value: 1.5E-21
score: 77.9
NoneNo IPR availablePFAMPF03656Pam16coord: 1..111
e-value: 1.8E-21
score: 76.5
NoneNo IPR availablePANTHERPTHR12388:SF6MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT PAM16 LIKE 1coord: 1..110
IPR005341Mitochondrial import inner membrane translocase subunit Tim16PANTHERPTHR12388MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULEcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16808-RACarg16808-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030150 protein import into mitochondrial matrix
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005744 TIM23 mitochondrial import inner membrane translocase complex