Carg16618 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16618
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSnoaL-like domain-containing protein
LocationCarg_Chr15: 8870612 .. 8873036 (+)
RNA-Seq ExpressionCarg16618
SyntenyCarg16618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGTATTTTTGTGTTCTCATTCATAATACTATGAATGTAGAGAAGAAATCTGTTATTGATTGTCCATGGAACCTACTTGCAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAAGTGGCGCTTCTCGGGCTGGAGTAACCTGGCATCTAGGTACTTCTATCTATCATTAGAGATGTCTATTTAGAATCCACGTTTAAATGGAGAATAGAAGAGAGAGTTGGGAGAGATTTTTTGACGTAAGTGAAACGGGCAGGGACGGAGATTACATTCTCGTCCCTGTTTTTGGCCTTGGCCTTACCTTGCCTGCGGTGGGGACAGGGACAGAGATTACATTCTCGTTCGTGTTTTTGGCTTTGGTCTTGCCTGTGGTGGGGGACAGGGACAGAGGTTACATTCTTGTCCCTATTCTTTGCCTCGGCCTTGCTCGTGATGAGGACAGGGATGAAGATTACATTTTCATCCTTGTTTTCGCGAGCAAGGACGGGGATTACATTCTCATCCCTGTTTTTGACCTCGGTCTCGCCCGTGGTGGAGGCAGGGATGGAGATTACATTCTCATCCTTGATTTTGGCCTCGGCCTCGCCTACGGTGGGGACAGGGACGGAGATTACATTCTCATCCCTGTTCTTGGTTTTGGCCTCGCCCACAGTGGGGATAGGGATGGAGATTACATTCTCATCCTTGTTTTTGGCATAGGCCTCGCCTGTAGTGGGGACAGAGACGGAGATTACACTATTGTCCCTGTTCTTGGCCTCGACCTTGCCCCCAGTGGGAACAGGGACGAAGATTTCATTCTCGTCCATGTTCTTGGCCTCGGCCTCGCTCTCGGTGGAGACAGGGACGGAGATTACACTATTGTCCCTGTTCTTGGCCTCGACCTTGCCCCCTAGTGGGAACAGGGACAAAGATTTCATTCTCGTCCATGTTCTTGGCCTCGGCCTCGCTCGCAGTGGAGACAGGGACGGAGATTACATTCTCGTCCCTGTTTTTGGCCTTGGCCTCGCCTGTAGTGGGGACAGGGGCGGAGATTACATTCTTGTCCCTATTTTTTTCCTCGGCCTCACCCGCGGTGAAGACAAAGATGAAAATTATATTCTCGTCTCCATGCTTGCCCTTAGCCTCACTCGTGTGGGGACAGGGACAGAGGTTACATTCTCCTCCTTGTTCTTGGCCTCGACCTCACCTGCAATGGGGACAGGGACAAAAATTACATTCTTATCCCTGTTCTTGGCCTCCACCTCGTCTGCAATGGGGACTAGGACGAAGATTACATTCTCGTCTCTGTTCTTAGCCTCGGTCTCACCCACAATGGGGACAGGGACAAGGACAAGGACGTGAAGACTTTCCTATTCCCACCTCACCTATGAGCATCTCTACTACCATCATCCCTCCAACTCTTACCATTCTAATAGATCAACAAACTTGGTCATCCTTGAACAGTGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGTAAACCAACCAACACACAAACTCAATACCTATCTCAACCAATTACCCGCTATCTTACATGCAACTCTCTTGCAGGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGTGAGTACACACAACTCATAACTCCCACCAATTTCAACACATAAAATGAGTATAATCCATACAAATTGTGTACACAAATCATCAGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGTAAGTCATTTTTGATACCTTAAGCCATAGAACTTGATGAACAAACATGACATTATGTGTCTTGCAGGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

mRNA sequence

ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAATGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

Coding sequence (CDS)

ATGGCCCTTATTACGAGCCCTCCTCCTCAAGCTCTCACCTTGGGCTCCCAACCATTTAGAACATTTGCATATACATCCATCCCTAAGAGACCCTCATATTTGTTTCAACAAAAGAAGCTTAGGAAAACAAGCTACACATTAGCCACCGACGTTAAGCCCCGTTTCGTGTCGTCGTGCTTAAAGGACGGCTCGGTTTGTAGCTTAGATTCATGTTCAAATTCTCCATCAGAAATGGTTAAGAAATTGTACGAGTGCATCAATGAAAAGAAGTTGAAGGAGTTGAGTAGTTACATGTCAGAAGATTGCCTTATTGAGGACTCCTTGTTTGATGAAGCATTTATAGGGAAGGAGGCTGCTCTCAAGTTCTTTAAAGAACTAACTCAAAGTATGGGTCCGGATGTGAAGTTTAGGTTTCGTAACGTCTATGAAATGTGGAAGAACACAAAGATCCCCTTCACCAAAGGTTGCACCTTCATACACATCAACAACGAACAAAGAACCATACAGAAGGCACAAATCATAATAGAACCACAAGTAAAAGCGGGGCATCTCATCTTGGGTATGATGAAGCTGGTAACCTCCTTGCTTGCTCAGTATCCAGCAATTCATAAATGGGTGATGAAACTTTCCCAGCAGCGTTGGGTAAGGTGGGTGGCCAAGATCTGCGTACTTCTCTACAACTTCTTCTTGCACAGCCTCTTGCGGAGCTATCTAACCTTTATACATTGTGCCTCTCTAATGTTTGTTTTTACACTCAAATTGTTACGTTGGGTTAAAGGCTTCTTCAATTAA

Protein sequence

MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKFFKELTQSMGPDVKFRFRNVYEMWKNTKIPFTKGCTFIHINNEQRTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN
Homology
BLAST of Carg16618 vs. NCBI nr
Match: KAG7016986.1 (hypothetical protein SDJN02_22097, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 524.6 bits (1350), Expect = 4.8e-145
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYEMWKNTKIPFTKGCTFIHINNEQRTIQKAQIIIEPQVK 180
           KFFKELTQSMGPDVKFRFRNVYEMWKNTKIPFTKGCTFIHINNEQRTIQKAQIIIEPQVK
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYEMWKNTKIPFTKGCTFIHINNEQRTIQKAQIIIEPQVK 180

Query: 181 AGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYLTF 240
           AGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYLTF
Sbjct: 181 AGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNFFLHSLLRSYLTF 240

Query: 241 IHCASLMFVFTLKLLRWVKGFFN 264
           IHCASLMFVFTLKLLRWVKGFFN
Sbjct: 241 IHCASLMFVFTLKLLRWVKGFFN 263

BLAST of Carg16618 vs. NCBI nr
Match: XP_022929026.1 (uncharacterized protein LOC111435747 [Cucurbita moschata])

HSP 1 Score: 514.2 bits (1323), Expect = 6.5e-142
Identity = 262/275 (95.27%), Postives = 263/275 (95.64%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFIHINNEQRTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLVWKNTKIPFTKGCTFIHINNEQRTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF
Sbjct: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN
Sbjct: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 275

BLAST of Carg16618 vs. NCBI nr
Match: XP_022970084.1 (uncharacterized protein LOC111469081 [Cucurbita maxima])

HSP 1 Score: 485.7 bits (1249), Expect = 2.5e-133
Identity = 246/275 (89.45%), Postives = 255/275 (92.73%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPK+PS LFQQKKLRKTSYTL TDVKPRFV SCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKKPSSLFQQKKLRKTSYTLVTDVKPRFVLSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKK YECINEKKLKELSSY+SEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKFYECINEKKLKELSSYISEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFI INNE+RTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDINNEERTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQII+EPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRW+AKICV+LY F
Sbjct: 181 QKAQIIMEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWLAKICVVLYKF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSL+RSYLTFIHC SLMFVFT+KLLRWV GFFN
Sbjct: 241 FLHSLMRSYLTFIHCGSLMFVFTVKLLRWVIGFFN 275

BLAST of Carg16618 vs. NCBI nr
Match: XP_023550969.1 (uncharacterized protein LOC111808949 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 482.3 bits (1240), Expect = 2.7e-132
Identity = 247/275 (89.82%), Postives = 253/275 (92.00%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLAT+VKPRFV SCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATNVKPRFVLSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGS CSLDSCS SPSEMV+KLYECINEKKLKELSSYMSEDCLIEDSLFDE FIGKEAAL
Sbjct: 61  KDGSGCSLDSCSKSPSEMVRKLYECINEKKLKELSSYMSEDCLIEDSLFDEPFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFF+ELTQSMG DVKFRFRNVYE            +WKNTKIPFTKGCTFI INNEQRTI
Sbjct: 121 KFFEELTQSMGRDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDINNEQRTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLS QRWVRW+AKICV+LY F
Sbjct: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSHQRWVRWLAKICVVLYKF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSLLRSYLTFIHC SLMFVFTLKLLRWV GFFN
Sbjct: 241 FLHSLLRSYLTFIHCGSLMFVFTLKLLRWVIGFFN 275

BLAST of Carg16618 vs. NCBI nr
Match: KAG6579526.1 (hypothetical protein SDJN03_23974, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.5 bits (981), Expect = 3.0e-102
Identity = 257/593 (43.34%), Postives = 259/593 (43.68%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           M LITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVK RFVSSCL
Sbjct: 1   MTLITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKTRFVSSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------------------------------- 180
           KFFKELTQSMGPDVKFRFRNVYE                                     
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLGTEITFSFVFLALVLPVVGDRDRGY 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 ILVPILCLGLARDEDRDEDYIFILVFAGKDGDYILIPVFGLGLARSGGRDGDYIHILDFG 240

Query: 241 ------------------------------------------------------------ 264
                                                                       
Sbjct: 241 LGLAYGGDRDGDYILIPVLGFGLVHSGDRDGDYILILVFGIGLACSGDRDGDYTIVPVLG 300

BLAST of Carg16618 vs. ExPASy TrEMBL
Match: A0A6J1ELY0 (uncharacterized protein LOC111435747 OS=Cucurbita moschata OX=3662 GN=LOC111435747 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.2e-142
Identity = 262/275 (95.27%), Postives = 263/275 (95.64%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFIHINNEQRTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGASRAGVTWHLVWKNTKIPFTKGCTFIHINNEQRTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF
Sbjct: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN
Sbjct: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 275

BLAST of Carg16618 vs. ExPASy TrEMBL
Match: A0A6J1I4H1 (uncharacterized protein LOC111469081 OS=Cucurbita maxima OX=3661 GN=LOC111469081 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.2e-133
Identity = 246/275 (89.45%), Postives = 255/275 (92.73%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSSCL 60
           MALITSPPPQALTLGSQPFRTFAYTSIPK+PS LFQQKKLRKTSYTL TDVKPRFV SCL
Sbjct: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKKPSSLFQQKKLRKTSYTLVTDVKPRFVLSCL 60

Query: 61  KDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAAL 120
           KDGSVCSLDSCSNSPSEMVKK YECINEKKLKELSSY+SEDCLIEDSLFDEAFIGKEAAL
Sbjct: 61  KDGSVCSLDSCSNSPSEMVKKFYECINEKKLKELSSYISEDCLIEDSLFDEAFIGKEAAL 120

Query: 121 KFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNEQRTI 180
           KFFKELTQSMGPDVKFRFRNVYE            +WKNTKIPFTKGCTFI INNE+RTI
Sbjct: 121 KFFKELTQSMGPDVKFRFRNVYESGTSRAGATWHLVWKNTKIPFTKGCTFIDINNEERTI 180

Query: 181 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLLYNF 240
           QKAQII+EPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRW+AKICV+LY F
Sbjct: 181 QKAQIIMEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWLAKICVVLYKF 240

Query: 241 FLHSLLRSYLTFIHCASLMFVFTLKLLRWVKGFFN 264
           FLHSL+RSYLTFIHC SLMFVFT+KLLRWV GFFN
Sbjct: 241 FLHSLMRSYLTFIHCGSLMFVFTVKLLRWVIGFFN 275

BLAST of Carg16618 vs. ExPASy TrEMBL
Match: A0A6J1DVV2 (uncharacterized protein LOC111023569 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023569 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 3.0e-68
Identity = 154/284 (54.23%), Postives = 193/284 (67.96%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQPFRTFAYTSIPKRPSYLFQQKK---------LRKTSYTLATDV 60
           MALI SPPP  ++LGSQ FR   YT++PK  S +FQQKK         +RKT+   +TDV
Sbjct: 1   MALIRSPPP--ISLGSQSFRNLPYTALPKISSCVFQQKKTTVLKYGDWMRKTNKRSSTDV 60

Query: 61  KPRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDE 120
           K RFV SCL D S   LDS SN  SEM++  Y CINEK L+EL SY+SEDC+IEDSLF E
Sbjct: 61  KLRFVPSCLPDDSDSCLDSNSNPSSEMIENFYRCINEKNLEELGSYISEDCVIEDSLFIE 120

Query: 121 AFIGKEAALKFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFI 180
            F G++ AL+FF+ELTQSMG  VKFR  NVYE             WK+ +IPF+KGCTFI
Sbjct: 121 PFQGRKEALEFFEELTQSMGRYVKFRILNVYESGTSGAGAIWRLAWKDIEIPFSKGCTFI 180

Query: 181 HINNE-QRTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWV 240
           +I NE +R IQKAQII+EPQVKAGH IL ++KLVTSLL  +PAI +W++KL Q  WV+W+
Sbjct: 181 NIRNEKRRAIQKAQIIVEPQVKAGHFILALLKLVTSLLDTFPAIPEWLLKLFQLPWVKWL 240

Query: 241 AKICVLLYNFFLHSLLRSYLTFIHCASLM-FVFTLKLLRWVKGF 262
           +KIC+ L+     S L S L F +  +   +V  L  LR++ GF
Sbjct: 241 SKICIKLFTLLWESFLESLLAFKYLYNYRHWVLPLNFLRYILGF 282

BLAST of Carg16618 vs. ExPASy TrEMBL
Match: A0A0A0KMI4 (SnoaL-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 151/269 (56.13%), Postives = 186/269 (69.14%), Query Frame = 0

Query: 1   MALITSPPPQALTL-GSQPFRTF-AYTSIPKRPSYLFQQKK------LRKTSYTLATDVK 60
           M+LITS  PQA+   GSQ FR F +YT + KR S +FQQKK       RKT+ TL     
Sbjct: 1   MSLITS--PQAVNFGGSQSFRRFSSYTFLNKRTSCIFQQKKNYGNYNKRKTNNTL----- 60

Query: 61  PRFVSSCLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEA 120
              V SCL D S     S SNSP EM+++ Y+CINEK LKE+S+Y+SEDCLIEDSLF E 
Sbjct: 61  ---VLSCLMDDSFSCPGSSSNSPGEMIERFYKCINEKNLKEMSTYISEDCLIEDSLFIEK 120

Query: 121 FIGKEAALKFFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIH 180
           F GK+AA+ F ++LT+SMGPDVKFR R VYE             W+N +IP TKGCTFI 
Sbjct: 121 FKGKKAAMSFIEKLTESMGPDVKFRIRKVYERHPSMAGAIWHLEWRNMEIPLTKGCTFID 180

Query: 181 INNEQR-TIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVA 240
           I +E+R TIQK QII EPQ KAGHLIL +MKLVT LLA+  AI +W++K SQQRWV+W++
Sbjct: 181 IRDEERKTIQKIQIINEPQFKAGHLILDIMKLVTLLLAKNSAILEWLIKASQQRWVKWMS 240

Query: 241 KICVLLYNFFLHSLLRSYLTFIHCASLMF 249
           KICV L+N  L S  +SYLTFIH  + ++
Sbjct: 241 KICVTLFNLLLDSFSKSYLTFIHFGAQLY 259

BLAST of Carg16618 vs. ExPASy TrEMBL
Match: A0A1S3ATV9 (uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482777 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.8e-63
Identity = 145/273 (53.11%), Postives = 186/273 (68.13%), Query Frame = 0

Query: 1   MALITSPPPQALTLGSQP-FRTFAYT-SIPKRPSYLFQQKKLRKTSYTLATDVKPRFVSS 60
           M+LITS  PQA+  G  P FR F+YT  + KR S +FQQKK         T+V  R VSS
Sbjct: 1   MSLITS--PQAVNFGGSPSFRRFSYTLFLNKRTSCIFQQKKNYGNYNKRKTNV--RLVSS 60

Query: 61  CLKDGSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEA 120
           CL D S     S SNSP EM++  Y+CINEK LK++++Y+SEDCLIEDSLF E F GK+A
Sbjct: 61  CLMDDSFSYSSSSSNSPGEMIEMFYKCINEKNLKKMNTYISEDCLIEDSLFIEKFKGKKA 120

Query: 121 ALKFFKELTQSMGPDVKFRFRNVYEM------------WKNTKIPFTKGCTFIHINNEQR 180
           A+ F ++LT+SMGPDVKFR R VYE             W+N +IP TKGCTFI I +E+R
Sbjct: 121 AMSFIEKLTESMGPDVKFRIRTVYERRPSMAGAIWHLEWRNMEIPLTKGCTFIDIRDEER 180

Query: 181 -TIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLL 240
            TIQ  QII E Q+KAGHL L +MKLVT LLA++PAI +W+ K+SQQRWV+ ++KIC+ L
Sbjct: 181 KTIQMVQIITESQLKAGHLFLAIMKLVTLLLAKHPAILEWLTKVSQQRWVKRISKICIFL 240

Query: 241 YNFFLHSLLRSYLTFIHCASLMFVFTLKLLRWV 259
           +   L + L+SYLTFIH  + ++   L  L +V
Sbjct: 241 FKHLLDNFLKSYLTFIHLGTQLYSHVLNFLCYV 269

BLAST of Carg16618 vs. TAIR 10
Match: AT5G41470.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-21
Identity = 71/221 (32.13%), Postives = 116/221 (52.49%), Query Frame = 0

Query: 65  VCSLDSCSNSPSEM-----VKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAA 124
           V  LD  ++ P+++     V K Y  INEK   +LSS +S DC I+D  F + F GK+ A
Sbjct: 60  VSCLDRPNSRPNQISGYDAVMKFYSSINEKNQDQLSSCISSDCFIDDFSFPKPFRGKQEA 119

Query: 125 LKFFKELTQSMGPDVKFRFRNVYE------------MWKNTKIPFTKGCTFIHINNE--Q 184
           ++FF+EL +SMG +VKF   NV E             WK  KIPFT+GC+F    +E  +
Sbjct: 120 MEFFEELVKSMGQNVKFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGR 179

Query: 185 RTIQKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAIHKWVMKLSQQRWVRWVAKICVLL 244
             I+ A+I+IE  +K G + L ++K +T L  ++P   K      ++ +   + +  + +
Sbjct: 180 LVIRNARILIESPIKPGGITLSLLKNITFLFDEFP---KGAELFLEKPYA--IIQAAIRI 239

Query: 245 YNFFLHSLLR----SYLTFIHCASLMFVFTLKLLRWVKGFF 263
           Y  FL  L+     SYL  +   +  F+  +K++  ++  F
Sbjct: 240 YGLFLAPLINHVMASYLKLLSNMAEFFLLVVKIIIKIRNLF 275

BLAST of Carg16618 vs. TAIR 10
Match: AT1G71480.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-15
Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 0

Query: 9   PQALTLGSQPFRTFAYTSIPKRPSYLFQQKKLRKTSY------TLATDVKPRFVSSCLKD 68
           P  ++L   P   F  T + K  S    Q      SY        A DV P         
Sbjct: 14  PSLVSLNHLPPSFFLPTKLVKPTSLTHSQPPRLSASYGPAAKAATANDVVP--------- 73

Query: 69  GSVCSLDSCSNSPSEMVKKLYECINEKKLKELSSYMSEDCLIEDSLFDEAFIGKEAALKF 128
                 ++   S SE+V   Y  +N   L  ++  +++DC+ ED +F   F+G++A L F
Sbjct: 74  ------ETAPTSASEVVSSFYAAVNVHDLSSVTDLIAQDCVYEDLVFSSPFVGRKAILDF 133

Query: 129 FKELTQSMGPDVKFRFRNV------------YEMWKNTKIPFTKGCTF--IHINNEQRTI 188
           F +  +S   D++F   ++            +  WK    PF+KGC+F  + + + +R I
Sbjct: 134 FGKFIESTSTDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQI 193

Query: 189 QKAQIIIEPQVKAGHLILGMMKLVTSLLAQYPAI 203
              +  +EP +K G  +L  +K VT LL ++P +
Sbjct: 194 VYGRDCVEPAIKPGETVLAAIKGVTWLLQKFPQL 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7016986.14.8e-145100.00hypothetical protein SDJN02_22097, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022929026.16.5e-14295.27uncharacterized protein LOC111435747 [Cucurbita moschata][more]
XP_022970084.12.5e-13389.45uncharacterized protein LOC111469081 [Cucurbita maxima][more]
XP_023550969.12.7e-13289.82uncharacterized protein LOC111808949 [Cucurbita pepo subsp. pepo][more]
KAG6579526.13.0e-10243.34hypothetical protein SDJN03_23974, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ELY03.2e-14295.27uncharacterized protein LOC111435747 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1I4H11.2e-13389.45uncharacterized protein LOC111469081 OS=Cucurbita maxima OX=3661 GN=LOC111469081... [more]
A0A6J1DVV23.0e-6854.23uncharacterized protein LOC111023569 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A0A0KMI41.5e-6456.13SnoaL-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152840 ... [more]
A0A1S3ATV93.8e-6353.11uncharacterized protein LOC103482777 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT5G41470.12.1e-2132.13Nuclear transport factor 2 (NTF2) family protein [more]
AT1G71480.15.0e-1526.17Nuclear transport factor 2 (NTF2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.50coord: 65..145
e-value: 2.3E-7
score: 32.7
NoneNo IPR availablePANTHERPTHR33698NUCLEAR TRANSPORT FACTOR 2 (NTF2)-LIKE PROTEINcoord: 29..258
NoneNo IPR availablePANTHERPTHR33698:SF1NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 29..258
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 76..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16618-RACarg16618-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane