Carg16615 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16615
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S10-like
Location	Carg_Chr15: 8885711 .. 8887657 (-)
RNA-Seq Expression	Carg16615
Synteny	Carg16615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGGCCGTGGCCCGTAACCAGTACGAAGGAAGACAATGGGCCGGAAAGCCCATAAGTTGTCTATTCATTCGATGGTTTATAAGTCAAAGTTTCTGAGTTTTAGGGCTTTACGCTGGGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCTGCCGCTTCTTCCTGCCGCCGCCGATCACTCCGACAAAATGGTACGCCGTTTATCCTTTCACCGTACATTTAACACCCAAGTTTCTTCTTTTGTTCAACCAGAAACCAATGGAAAATGTTAGTAAGATTTGAAGGAAATATAATTAGTTGTTAATCTTGTTGAGGGCTCGTTCATTCGCACCGTTCATCAATGCGTTTGGTTGGTTTTCGATTGGGATTGGGTTTGGGACTTCGGATGCAATTAGTGTTACCGGCCTGAACTCTGGATTTTGAAGTGTTTTTATTTTGTTGTTCATGATTTTAATCGACCCTCAACGGGGAGTAATTCTGTTTAAACGATCCGAACGTTGTCTTTTTAGATCATTTCAGAGAAGAACCGCCGAGAGATCTCTAAGTACCTATTTCAAGGTAGTGAATTTTACTTTTTTGTGCGTTTGTTGTGGTTAGTTTTTTTTTTTTTTCCTTCTTTTTCTCTTCGTCTGTTTGTTTATTTTTTGTTTGTTGCTGTTTTGTATTAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCGAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGGTAAATCTTCTGCTGCTTTGCATATGATGGATGATTTCCATACTTTTGCTTATTGGTTTTTATTGGTTTTTGCTGACTTTGTGCTGGTTTTACTTGTTGATTTTACTCTGTATCATTACTTTATGTTGCATAATTTTGGTTCTAAATGGTCTACTACTGCTTTGGCTAGATTGGATATGGAAATTTAACTCTTACCTTGATGCTACCGATTGTGCACTCTGCTGGTCTTTCATTCTGTAGTTTGATTTTGATTATTCTTTTGTCCTCATTCATTGATATTGCTCTTGATTAGTGGCCCGTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGATCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGTAAGCAATTTTACCACTCCTAGTATAACCCAACTCTTGATATTCCTATATAAGTTAGATTTGTTTGCTATGCCATCTAGAGATTGTTTGATCTTGATATTTCGAATCTTAGTTACAGTCCACTCCCCCAGTTGGGGGTATCAAAGTCAATAACTTTCTAATTGTTGGTTATTGGTTCTTTAACATTGTAGGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGAGAGAACATCATAGGTGTATGGGATTGTTTTTGTTAGTTTTAGTTTTGAAGCATGTTGAATCGAAGATGTTAAATTAAACTCATGAGATCATATCAGTTTTGTTTGCCTATAATCAATTGTCAGATCTTTGATTGCTGAAGTCTTTTGATTCCCCCTCTCCTATTGCTGATTCCCAAAACTCTGTTCTCACCATGTTTAGATTGTGAATTAATCAACTTATCCCAGAAGCATTCTAGTTCACTGCCTGCCTCATCCATTTTCAATTTGTTGCTGTAGTTCAGTCTTCCATAGTAATCAAATA

mRNA sequence

ATGTTTGGGCCGTGGCCCGTAACCAGGCTTTACGCTGGGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCTGCCGCTTCTTCCTGCCGCCGCCGATCACTCCGACAAAATGTTGTTAATCTTGTTGAGGGCTCGTTCATTCGCACCGTTCATCAATGCGTTTGGTTGGTTTTCGATTGGGATTGGATCATTTCAGAGAAGAACCGCCGAGAGATCTCTAAGTACCTATTTCAAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCGAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGTGGCCCGTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGATCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGAGAGAACATCATAGGTGTATGGGATTGTTTTTGTTAGTTTTAGTTTTGAAGCATGTTGAATCGAAGATGTTAAATTAAACTCATGAGATCATATCAGTTTTGTTTGCCTATAATCAATTGTCAGATCTTTGATTGCTGAAGTCTTTTGATTCCCCCTCTCCTATTGCTGATTCCCAAAACTCTGTTCTCACCATGTTTAGATTGTGAATTAATCAACTTATCCCAGAAGCATTCTAGTTCACTGCCTGCCTCATCCATTTTCAATTTGTTGCTGTAGTTCAGTCTTCCATAGTAATCAAATA

Coding sequence (CDS)

ATGTTTGGGCCGTGGCCCGTAACCAGGCTTTACGCTGGGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCTGCCGCTTCTTCCTGCCGCCGCCGATCACTCCGACAAAATGTTGTTAATCTTGTTGAGGGCTCGTTCATTCGCACCGTTCATCAATGCGTTTGGTTGGTTTTCGATTGGGATTGGATCATTTCAGAGAAGAACCGCCGAGAGATCTCTAAGTACCTATTTCAAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCGAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGTGGCCCGTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGATCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGA

Protein sequence

MFGPWPVTRLYAGKEDCERVSLLAAAASSCRRRSLRQNVVNLVEGSFIRTVHQCVWLVFDWDWIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE

Homology

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BLAST of Carg16615 vs. NCBI nr
Match: KAG7016989.1 (40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 493.8 bits (1270), Expect = 8.3e-136
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MFGPWPVTRLYAGKEDCERVSLLAAAASSCRRRSLRQNVVNLVEGSFIRTVHQCVWLVFD 60
           MFGPWPVTRLYAGKEDCERVSLLAAAASSCRRRSLRQNVVNLVEGSFIRTVHQCVWLVFD
Sbjct: 1   MFGPWPVTRLYAGKEDCERVSLLAAAASSCRRRSLRQNVVNLVEGSFIRTVHQCVWLVFD 60

Query: 61  WDWIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRET 120
           WDWIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRET
Sbjct: 61  WDWIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRET 120

Query: 121 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDG 180
           FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDG
Sbjct: 121 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDG 180

Query: 181 ERRFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 240
           ERRFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL
Sbjct: 181 ERRFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 240

Query: 241 E 242
           E
Sbjct: 241 E 241

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BLAST of Carg16615 vs. NCBI nr
Match: XP_023549574.1 (40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ribosomal protein S10-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.1 bits (923), Expect = 1.4e-95
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. NCBI nr
Match: XP_022928970.1 (40S ribosomal protein S10-1-like [Cucurbita moschata])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. NCBI nr
Match: XP_022158473.1 (transcription factor MYB39-like [Momordica charantia])

HSP 1 Score: 358.2 bits (918), Expect = 5.5e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 324 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 383

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 384 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 443

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 444 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of Carg16615 vs. NCBI nr
Match: XP_022970109.1 (40S ribosomal protein S10-1-like [Cucurbita maxima])

HSP 1 Score: 356.7 bits (914), Expect = 1.6e-94
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGAPAPSNLE 179

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BLAST of Carg16615 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.7e-73
Identity = 145/176 (82.39%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 183
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 239
           RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of Carg16615 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-72
Identity = 143/182 (78.57%), Postives = 158/182 (86.81%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER 183
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 184 -RFGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSN 242
            RFGDRDGYRGGPRG+ GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S+
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of Carg16615 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-72
Identity = 143/182 (78.57%), Postives = 158/182 (86.81%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER 183
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 184 -RFGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSN 242
            RFGDRDGYRGGPRG+ GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S+
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of Carg16615 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.6e-71
Identity = 145/180 (80.56%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 123
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 124 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 183
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 241
           RFGDRDGYRGGP+ SGG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 122 RFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of Carg16615 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 5.4e-69
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 183
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 239
           RFGDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of Carg16615 vs. ExPASy TrEMBL
Match: A0A6J1ESX8 (40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.6e-95
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. ExPASy TrEMBL
Match: A0A6J1DW67 (transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.7e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 324 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 383

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 384 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 443

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 444 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of Carg16615 vs. ExPASy TrEMBL
Match: A0A6J1I4J7 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 7.7e-95
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. ExPASy TrEMBL
Match: A0A5A7TIX3 (40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002270 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.2e-94
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           II EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. ExPASy TrEMBL
Match: A0A0A0KK65 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.2e-94
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           II EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 242
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Carg16615 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-74
Identity = 145/176 (82.39%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 183
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 239
           RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of Carg16615 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.8e-72
Identity = 145/180 (80.56%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 123
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 124 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 183
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 241
           RFGDRDGYRGGP+ SGG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 122 RFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of Carg16615 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 262.3 bits (669), Expect = 3.8e-70
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 183
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 184 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 239
           RFGDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of Carg16615 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-59
Identity = 122/175 (69.71%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP                
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP---------------- 121

Query: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 239
                         GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 -------------RGGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 144

[Close]

BLAST of Carg16615 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-52
Identity = 110/135 (81.48%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 108 MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 167
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 168 SGDRPRGPSRFDGERRFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSF-GGPGG-RPGFG 227
            GDRPRGP R DGERRFGDRDGYRGGP+ SGG++GDK GAPADY+P F GG GG R GFG
Sbjct: 61  GGDRPRGPPRGDGERRFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFG 120

Query: 228 RGAGGYGGAPAPSNL 241
           RGAGG+GG  A S+L
Sbjct: 121 RGAGGFGGGAAGSDL 133

The following BLAST results are available for this feature:

BLAST of Carg16615 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016989.1	8.3e-136	100.00	40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023549574.1	1.4e-95	100.00	40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ...	[more]
XP_022928970.1	3.2e-95	99.44	40S ribosomal protein S10-1-like [Cucurbita moschata]	[more]
XP_022158473.1	5.5e-95	99.44	transcription factor MYB39-like [Momordica charantia]	[more]
XP_022970109.1	1.6e-94	98.88	40S ribosomal protein S10-1-like [Cucurbita maxima]	[more]

BLAST of Carg16615 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW09	4.7e-73	82.39	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
P0DKK8	1.0e-72	78.57	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	1.0e-72	78.57	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9FFS8	2.6e-71	80.56	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]
Q9LTF2	5.4e-69	78.98	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]

BLAST of Carg16615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESX8	1.6e-95	99.44	40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 P...	[more]
A0A6J1DW67	2.7e-95	99.44	transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 P...	[more]
A0A6J1I4J7	7.7e-95	98.88	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=...	[more]
A0A5A7TIX3	2.2e-94	98.31	40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0KK65	2.2e-94	98.31	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800...	[more]

BLAST of Carg16615 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	3.3e-74	82.39	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	1.8e-72	80.56	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	3.8e-70	78.98	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	3.0e-59	69.71	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	1.2e-52	81.48	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 65..156 e-value: 2.2E-42 score: 143.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 63..166 e-value: 5.1E-46 score: 156.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..190
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 41..240
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 41..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16615-RA	Carg16615-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome