Carg16609 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16609
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	late embryogenesis abundant protein At1g64065
Location	Carg_Chr15: 8934673 .. 8935287 (+)
RNA-Seq Expression	Carg16609
Synteny	Carg16609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCGGCGAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGTCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACGACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGTAAATGCTAAGAGTAATAAAAATGCGAACTTTACGGTGAAAGTGAAACCCAATTCGAGCTTTGTTGACGTGGATTACTTCAGCCATGACTTGGCGATGTTGAAGACGATGAATATGAGCTGCATCGCCGAGTTTAAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAGGAGAAGAAAGTTTCTATGTTGAAATGTACTATGAGCTTGAATTTGAGCTCCCATGGCGTCCAAAATCTCGCTTGCCAATAG

mRNA sequence

ATGGCGGCCGGCGAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGTCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACGACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGTAAATGCTAAGAGTAATAAAAATGCGAACTTTACGGTGAAAGTGAAACCCAATTCGAGCTTTGTTGACGTGGATTACTTCAGCCATGACTTGGCGATGTTGAAGACGATGAATATGAGCTGCATCGCCGAGTTTAAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAGGAGAAGAAAGTTTCTATGTTGAAATGTACTATGAGCTTGAATTTGAGCTCCCATGGCGTCCAAAATCTCGCTTGCCAATAG

Coding sequence (CDS)

ATGGCGGCCGGCGAACCTCCCAACGACCGACCGGCCACACTCCGATCAAGGCGCAAAGCATCAGAGAAATGCATCAACACCTTCTGCATTTACCTCTTCGCGATTGCCGCTGTTGCCTGCATCGCCGCTTTGATCCTCGGTCTTGTCGTCGTCCGGGTAAAAACTCCCACAGTGAAATTAACCTCCGTCACGGTAAAAAATCTCCACTACGGCTTTTCACCGACCCCTTTTATGGACGCCACATTAATCGCCGAAATCACAATGGAAAATCCCAATTTCGGGGAGTTCAAGTACGAGGAAGTAACGAACACGACATTGATTTACTACGGCGTGGCGGTCGGAATCGGCGAGGTGAAAACGGTGTCGGTAAATGCTAAGAGTAATAAAAATGCGAACTTTACGGTGAAAGTGAAACCCAATTCGAGCTTTGTTGACGTGGATTACTTCAGCCATGACTTGGCGATGTTGAAGACGATGAATATGAGCTGCATCGCCGAGTTTAAGGGAAGGGTTCGTTTGTTGAAATTGTTTAAGGAGAAGAAAGTTTCTATGTTGAAATGTACTATGAGCTTGAATTTGAGCTCCCATGGCGTCCAAAATCTCGCTTGCCAATAG

Protein sequence

MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEKKVSMLKCTMSLNLSSHGVQNLACQ

Homology

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BLAST of Carg16609 vs. NCBI nr
Match: XP_022970100.1 (late embryogenesis abundant protein At1g64065 [Cucurbita maxima] >KAG6579536.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016995.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.1 bits (1006), Expect = 2.9e-105
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVSMLKCTMSLNLSSHGVQNLACQ
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLACQ 204

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BLAST of Carg16609 vs. NCBI nr
Match: XP_023550526.1 (late embryogenesis abundant protein At1g64065 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAAG+PPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL
Sbjct: 1   MAAGQPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAKSNK ANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVSMLKCTMSLNLSSHGVQNLACQ
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLACQ 204

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BLAST of Carg16609 vs. NCBI nr
Match: XP_022929131.1 (late embryogenesis abundant protein At1g64065 [Cucurbita moschata])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAKSNK ANF VKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFKVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVSMLKCTMSLNL+SHGVQNLACQ
Sbjct: 181 KVSMLKCTMSLNLNSHGVQNLACQ 204

[Close]

BLAST of Carg16609 vs. NCBI nr
Match: XP_022145906.1 (late embryogenesis abundant protein At1g64065 [Momordica charantia])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 153/204 (75.00%), Postives = 171/204 (83.82%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA E   DRPATLRSRR+ASE+CIN  CIYLFA AA AC+A LILGL VVRVKTPT KL
Sbjct: 1   MAAQETSGDRPATLRSRRRASERCINACCIYLFAGAAAACVAVLILGLTVVRVKTPTAKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           +SV VKNL YGFSP PF+DATLIAE+T+ENPNFGEFKYEE T+ + IYYGVA GIGEVK 
Sbjct: 61  SSVAVKNLSYGFSPNPFVDATLIAEVTIENPNFGEFKYEENTDASFIYYGVAAGIGEVKR 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAK  K  +F+V+VK N+S  DVDY S+DLA LK MNMSCIAEF+GRVRLLKLFKE 
Sbjct: 121 VSVNAKGVKRTSFSVEVKTNASVADVDYMSYDLASLKRMNMSCIAEFEGRVRLLKLFKEM 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVS+LKCTM+LN SSH + NLACQ
Sbjct: 181 KVSLLKCTMTLNFSSHAIHNLACQ 204

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BLAST of Carg16609 vs. NCBI nr
Match: XP_008437351.1 (PREDICTED: late embryogenesis abundant protein At1g64065 [Cucumis melo] >KAA0042715.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 150/203 (73.89%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P DRP   RSRRK+S+KC+N FCI LFA AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VKNLHYGFSPTPFM+ATL  EITMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           +SVNAKS +   F VKVKPN  FV+VDYFS DLA LKTMNMS  AEF+G++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLAC 204
           K+S++KC+ SLNL+SHGVQNLAC
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLAC 203

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BLAST of Carg16609 vs. ExPASy Swiss-Prot
Match: Q6DST1 (Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN=At1g64065 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14
Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 0


Query: 17  RRKASE---KCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFS 76
           RRK  E   KC+    +Y   I  +     LIL  + +R+  P ++  S++ ++L  G +
Sbjct: 29  RRKTEEPPGKCL----VYSLTIIVIIFALCLILSSIFLRISKPEIETRSISTRDLRSGGN 88

Query: 77  PT-PFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSVNAKSNKNAN 136
            T P+ +ATL+++I++ N NFG F++E+  +T  + Y     +GE K      +++K   
Sbjct: 89  STNPYFNATLVSDISIRNSNFGAFEFED--STLRVVYADHGVVGETKIEGRRVEAHKTVR 148

Query: 137 FTVKVKPNSSF--VDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEKKVSMLKCTMS 196
            T  V    SF  +D      DL  L  + +  +AE +GR+++L   K  KVS++ CTM 
Sbjct: 149 ITGVVVEIGSFRLLDTKDLDKDL-RLGFLELRSVAEVRGRIKVLGR-KRWKVSVMSCTMR 208

Query: 197 LNLSSHGVQNLACQ 205
           LNL+   +QNL C+
Sbjct: 209 LNLTGRFIQNLLCE 214

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BLAST of Carg16609 vs. ExPASy TrEMBL
Match: A0A6J1I1W2 (late embryogenesis abundant protein At1g64065 OS=Cucurbita maxima OX=3661 GN=LOC111469093 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVSMLKCTMSLNLSSHGVQNLACQ
Sbjct: 181 KVSMLKCTMSLNLSSHGVQNLACQ 204

[Close]

BLAST of Carg16609 vs. ExPASy TrEMBL
Match: A0A6J1EM85 (late embryogenesis abundant protein At1g64065 OS=Cucurbita moschata OX=3662 GN=LOC111435804 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.7e-104
Identity = 201/204 (98.53%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL
Sbjct: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT
Sbjct: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAKSNK ANF VKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK
Sbjct: 121 VSVNAKSNKKANFKVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVSMLKCTMSLNL+SHGVQNLACQ
Sbjct: 181 KVSMLKCTMSLNLNSHGVQNLACQ 204

[Close]

BLAST of Carg16609 vs. ExPASy TrEMBL
Match: A0A6J1CXS7 (late embryogenesis abundant protein At1g64065 OS=Momordica charantia OX=3673 GN=LOC111015254 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.2e-76
Identity = 153/204 (75.00%), Postives = 171/204 (83.82%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA E   DRPATLRSRR+ASE+CIN  CIYLFA AA AC+A LILGL VVRVKTPT KL
Sbjct: 1   MAAQETSGDRPATLRSRRRASERCINACCIYLFAGAAAACVAVLILGLTVVRVKTPTAKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           +SV VKNL YGFSP PF+DATLIAE+T+ENPNFGEFKYEE T+ + IYYGVA GIGEVK 
Sbjct: 61  SSVAVKNLSYGFSPNPFVDATLIAEVTIENPNFGEFKYEENTDASFIYYGVAAGIGEVKR 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           VSVNAK  K  +F+V+VK N+S  DVDY S+DLA LK MNMSCIAEF+GRVRLLKLFKE 
Sbjct: 121 VSVNAKGVKRTSFSVEVKTNASVADVDYMSYDLASLKRMNMSCIAEFEGRVRLLKLFKEM 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLACQ 205
           KVS+LKCTM+LN SSH + NLACQ
Sbjct: 181 KVSLLKCTMTLNFSSHAIHNLACQ 204

[Close]

BLAST of Carg16609 vs. ExPASy TrEMBL
Match: A0A5A7TMT1 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002130 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 150/203 (73.89%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P DRP   RSRRK+S+KC+N FCI LFA AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VKNLHYGFSPTPFM+ATL  EITMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           +SVNAKS +   F VKVKPN  FV+VDYFS DLA LKTMNMS  AEF+G++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLAC 204
           K+S++KC+ SLNL+SHGVQNLAC
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLAC 203

[Close]

BLAST of Carg16609 vs. ExPASy TrEMBL
Match: A0A1S3AUE7 (late embryogenesis abundant protein At1g64065 OS=Cucumis melo OX=3656 GN=LOC103482795 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 150/203 (73.89%), Postives = 169/203 (83.25%), Query Frame = 0


Query: 1   MAAGEPPNDRPATLRSRRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKL 60
           MAA + P DRP   RSRRK+S+KC+N FCI LFA AA ACIAAL  GLVV+RVKTPTVKL
Sbjct: 1   MAADKIPGDRPTAHRSRRKSSKKCLNAFCICLFAAAATACIAALTFGLVVLRVKTPTVKL 60

Query: 61  TSVTVKNLHYGFSPTPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKT 120
           TSV VKNLHYGFSPTPFM+ATL  EITMENPN+G F+YE V N TLIYYGV VGIGEVK 
Sbjct: 61  TSVAVKNLHYGFSPTPFMEATLTGEITMENPNYGAFEYEGVRNVTLIYYGVVVGIGEVKR 120

Query: 121 VSVNAKSNKNANFTVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEK 180
           +SVNAKS +   F VKVKPN  FV+VDYFS DLA LKTMNMS  AEF+G++ LLKLFKEK
Sbjct: 121 LSVNAKSIEKRKFIVKVKPNWRFVNVDYFSDDLARLKTMNMSWNAEFEGKIYLLKLFKEK 180

Query: 181 KVSMLKCTMSLNLSSHGVQNLAC 204
           K+S++KC+ SLNL+SHGVQNLAC
Sbjct: 181 KISVMKCSTSLNLTSHGVQNLAC 203

[Close]

BLAST of Carg16609 vs. TAIR 10
Match: AT1G64065.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 0


Query: 17  RRKASE---KCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFS 76
           RRK  E   KC+    +Y   I  +     LIL  + +R+  P ++  S++ ++L  G +
Sbjct: 29  RRKTEEPPGKCL----VYSLTIIVIIFALCLILSSIFLRISKPEIETRSISTRDLRSGGN 88

Query: 77  PT-PFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSVNAKSNKNAN 136
            T P+ +ATL+++I++ N NFG F++E+  +T  + Y     +GE K      +++K   
Sbjct: 89  STNPYFNATLVSDISIRNSNFGAFEFED--STLRVVYADHGVVGETKIEGRRVEAHKTVR 148

Query: 137 FTVKVKPNSSF--VDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEKKVSMLKCTMS 196
            T  V    SF  +D      DL  L  + +  +AE +GR+++L   K  KVS++ CTM 
Sbjct: 149 ITGVVVEIGSFRLLDTKDLDKDL-RLGFLELRSVAEVRGRIKVLGR-KRWKVSVMSCTMR 208

Query: 197 LNLSSHGVQNLACQ 205
           LNL+   +QNL C+
Sbjct: 209 LNLTGRFIQNLLCE 214

[Close]

BLAST of Carg16609 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 0


Query: 17  RRKASEKCINTFCIYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHYGFSP-- 76
           RRK + K    F I L  + A+  +   IL   + + K PT  + SVTV  L    +P  
Sbjct: 46  RRKRNCKICICFTILLILLIAIVIV---ILAFTLFKPKRPTTTIDSVTVDRLQASVNPLL 105

Query: 77  -TPFMDATLIAEITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSVNAKSNKNANF 136
               ++ TL  +++++NPN   F Y+  ++  L Y G  +G   +    + A+     N 
Sbjct: 106 LKVLLNLTLNVDLSLKNPNRIGFSYDS-SSALLNYRGQVIGEAPLPANRIAARKTVPLNI 165

Query: 137 TVKVKPNSSFVDVDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEKKVSMLKCTMSLNL 196
           T+ +  +    +    S  +A +  +N     +  G+V +LK+FK K  S   C +S+++
Sbjct: 166 TLTLMADRLLSETQLLSDVMAGVIPLN--TFVKVTGKVTVLKIFKIKVQSSSSCDLSISV 225

Query: 197 SSHGVQNLACQ 205
           S   V +  C+
Sbjct: 226 SDRNVTSQHCK 230

[Close]

BLAST of Carg16609 vs. TAIR 10
Match: AT2G44000.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 0


Query: 30  IYLFAIAAVACIAALILGLVVVRVKTPTVKLTSVTVKNLHY----GFSPTPFMDATLIAE 89
           I++ A   +     +++G   +  K  T  LTSV V+NL Y      S + + +ATL  E
Sbjct: 36  IFILAGLCMLLFIFIVIGFFFI-AKPLTASLTSVEVRNLRYNNNTSSSSSLYFNATLAME 95

Query: 90  ITMENPNFGEFKYEEVTNTTLIYYGVAVGIGEVKTVSVNAKSNKNANFTVKVKPNSSFVD 149
           I +ENPN G F++   +   ++Y G  VG   +    V +  +     + +V    +   
Sbjct: 96  IRIENPNLGFFEF-PTSRGEILYNGDVVGEMRINGQRVASFGDLRTEVSAEVAYRGNQKS 155

Query: 150 VDYFSHDLAMLKTMNMSCIAEFKGRVRLLKLFKEKKVSMLKCTMSLNLSSHGVQNLACQ 205
             +  +D+   + + +   A+ +G V L  L   K+   LKC M LNLS   +  L C+
Sbjct: 156 PVWLKNDIER-RLIILETRAKLRGEVHLKDL--NKRTVNLKCLMQLNLSDDVIHRLWCK 209

The following BLAST results are available for this feature:

BLAST of Carg16609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970100.1	2.9e-105	100.00	late embryogenesis abundant protein At1g64065 [Cucurbita maxima] >KAG6579536.1 L...	[more]
XP_023550526.1	3.2e-104	99.02	late embryogenesis abundant protein At1g64065 [Cucurbita pepo subsp. pepo]	[more]
XP_022929131.1	1.6e-103	98.53	late embryogenesis abundant protein At1g64065 [Cucurbita moschata]	[more]
XP_022145906.1	1.1e-75	75.00	late embryogenesis abundant protein At1g64065 [Momordica charantia]	[more]
XP_008437351.1	2.2e-73	73.89	PREDICTED: late embryogenesis abundant protein At1g64065 [Cucumis melo] >KAA0042...	[more]

BLAST of Carg16609 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DST1	3.2e-14	31.44	Late embryogenesis abundant protein At1g64065 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg16609 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1W2	1.4e-105	100.00	late embryogenesis abundant protein At1g64065 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EM85	7.7e-104	98.53	late embryogenesis abundant protein At1g64065 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CXS7	5.2e-76	75.00	late embryogenesis abundant protein At1g64065 OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7TMT1	1.1e-73	73.89	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3AUE7	1.1e-73	73.89	late embryogenesis abundant protein At1g64065 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Carg16609 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64065.1	2.3e-15	31.44	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G54200.1	1.7e-07	25.65	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G44000.1	1.6e-05	26.82	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1820		coord: 41..194 e-value: 7.0E-6 score: 27.9
None	No IPR available	PANTHER	PTHR31852:SF157	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 16..204
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 16..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16609-RA	Carg16609-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane