Carg16587 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16587
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S15
Location	Carg_Chr14: 12952633 .. 12954564 (-)
RNA-Seq Expression	Carg16587
Synteny	Carg16587

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATATATCATCTTAATCGCCATTTGCAGTCTACTCAAAACCCTAGCGGCCAGAATCGCCATTTGCACTCGGCCTCGGCCTTCTTCTGATTTCTGAACTCCAACCATGGTAAGGCTCGAAGAATTCCCTGTATCCTGTTATGTAGTTTGTGTGTACGATATCTGACCTGAATTTCGTGTTCGTAGGCGGACGATAATCCCGATGTGACGGCGGCAGGAGCAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGACTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTTACTGCCAGGGCTCGCAGAAGGTAGTTCGAATGATATGTGGTAATCTTTTGGAACGATTTATTTGCTGGTTTTGACTCTTTTCCTGAATCTTCTGTTTCAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTCCGTAAAGCGGTAATTGCTCCACTTCTTGTTTCTTTTCCAATCTGATCCATTTTTTAACTGGAAAAGTAAATTTCAACCTTTCTTTTTTTGAAAATATAATTCTGATTTACGTGATTACTCTCGCCAATTTTGTTGCGTGCGTGTCTGGTTGGATATGAGTATACTAGATAGAAGATTAGAGCTCCACATTAACATAGTTGATATTATCCATTCCGTGGGTTGGATATTTTTGTTGGTTGATATTGGTGGAGTAGTTTTTGGAAAGAAATTTGGTGTTTTTCATTTAACTACTAGACTTGAGTCGAGTGTGTATTACAGAATATCGTACTGTGATTACCCCATAATACAGGACAATTTTAGATGGTAAACGCATAGAATATCCCTAGCGCATCGGCTTTGTGAAAATTTGGTGTTTAATATGGATGGTTGCCAACTCAGATATTGTTCAAGCGCAAGGTTCGCATGGAATTCCCATTATTTGAGCAATTCTCTTCTTTTTCAGTAATTCAATTTTGAATCAGCGGCGATATTGAATGAAAATCTCCTACATGATTCTTATAATTCAAGAAAATCCCAGTTTAAGATAGACAACCACCACCAATTATGACTAATTTGATTCTTCCCCACTGTCTTCTGCCTGCTGGTGAATTTCTCTTTACCTGTCTTCTACAATATTACTGCTTACGGGTTATGCTTCACGGGCCAATGGGTTGAACAATGTGATATCAATCTCACATGTTTTTTGCCCCATGTCTACAGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAACATGATTATAGTTCCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGGAAGACCTTCAATCAGGTTGAAATCAAACCAGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCATACAAGCCTGTTAAGCATGGTCGACCTGGTATTGGTGCTACTCACTCGTCTAGGTTCATTCCTCTGAAGTGAAAAGAGTATACCATTTCAGTCTTGAAGTGTACTCCGCTTCTCTTCAAGTTTTATGGATACTTACTTTTTTACTACATTATTTCATTTTAGCTACTTTTTGACTGGAATTTAATTTTTATGAACAATGAGATAATTTTGATGGTTCAGACATAGGTTCTTGGTTCAAAGGCTTCTAGTTGTTTTTAATAAGAATGCTTAAGCTCATCGTGGGATGCCTCTGGGTATGTTCTTTAAGGTTCTTTGTTTTTGATTGTTCCGAGCGGCGTTGTTGGAGGATGCTGTTCCTATATGTTCACTTCTGTTGATAGGTACATATTAGTCATTAGTAGTCCTAACTCGAAATAAGGAGCCATCATCTATTTATTAATTTCAACTGTGTCATGTATCAAAATTGTTTGGTTCAACTTAAAACATTCAAATGCTTCCGGCTCAAGTTCCAGAAAATTCACCCACCGTTG

mRNA sequence

TTATATATCATCTTAATCGCCATTTGCAGTCTACTCAAAACCCTAGCGGCCAGAATCGCCATTTGCACTCGGCCTCGGCCTTCTTCTGATTTCTGAACTCCAACCATGGCGGACGATAATCCCGATGTGACGGCGGCAGGAGCAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGACTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTTACTGCCAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTCCGTAAAGCGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAACATGATTATAGTTCCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGGAAGACCTTCAATCAGGTTGAAATCAAACCAGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCATACAAGCCTGTTAAGCATGGTCGACCTGGTATTGGTGCTACTCACTCGTCTAGGTTCATTCCTCTGAAGTGAAAAGAGTATACCATTTCAGTCTTGAAGTGTACTCCGCTTCTCTTCAAGTTTTATGGATACTTACTTTTTTACTACATTATTTCATTTTAGCTACTTTTTGACTGGAATTTAATTTTTATGAACAATGAGATAATTTTGATGGTTCAGACATAGGTTCTTGGTTCAAAGGCTTCTAGTTGTTTTTAATAAGAATGCTTAAGCTCATCGTGGGATGCCTCTGGGTATGTTCTTTAAGGTTCTTTGTTTTTGATTGTTCCGAGCGGCGTTGTTGGAGGATGCTGTTCCTATATGTTCACTTCTGTTGATAGGTACATATTAGTCATTAGTAGTCCTAACTCGAAATAAGGAGCCATCATCTATTTATTAATTTCAACTGTGTCATGTATCAAAATTGTTTGGTTCAACTTAAAACATTCAAATGCTTCCGGCTCAAGTTCCAGAAAATTCACCCACCGTTG

Coding sequence (CDS)

ATGGCGGACGATAATCCCGATGTGACGGCGGCAGGAGCAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGACTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTTACTGCCAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTCCGTAAAGCGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAACATGATTATAGTTCCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGGAAGACCTTCAATCAGGTTGAAATCAAACCAGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCATACAAGCCTGTTAAGCATGGTCGACCTGGTATTGGTGCTACTCACTCGTCTAGGTTCATTCCTCTGAAGTGA

Protein sequence

MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Homology

[Close]

BLAST of Carg16587 vs. NCBI nr
Match: XP_022924839.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022980463.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023526130.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6582354.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018765.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.0 bits (785), Expect = 9.2e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. NCBI nr
Match: XP_022935167.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023538650.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6597390.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028852.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. NCBI nr
Match: XP_008438580.1 (PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa] >TYK17257.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AA  VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. NCBI nr
Match: XP_038877091.1 (40S ribosomal protein S15-4 [Benincasa hispida])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAG-VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. NCBI nr
Match: XP_022147501.1 (40S ribosomal protein S15-4 [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAG-VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.8e-74
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.8e-74
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.7e-73
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD +  V   GA PKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 131/144 (90.97%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 10  AAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLR 69
           AAGA PKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL RKPMALIKKLR
Sbjct: 11  AAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLR 70

Query: 70  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 129
           KAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSI
Sbjct: 71  KAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSI 130

Query: 130 SYKPVKHGRPGIGATHSSRFIPLK 154
           SYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 131 SYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Carg16587 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.0e-70
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DV      PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R+
Sbjct: 1   MAD--ADVDVGPVQPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQ 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of Carg16587 vs. ExPASy TrEMBL
Match: A0A6J1IZD8 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479845 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.4e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. ExPASy TrEMBL
Match: A0A6J1EAC1 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111432206 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.4e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. ExPASy TrEMBL
Match: A0A6J1IA94 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.9e-79
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. ExPASy TrEMBL
Match: A0A6J1F4T6 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.9e-79
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AAG VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. ExPASy TrEMBL
Match: A0A5D3CZY1 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001090 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDV AA  VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Carg16587 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 277.7 bits (709), Expect = 5.6e-75
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 277.7 bits (709), Expect = 5.6e-75
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Carg16587 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-73
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]

BLAST of Carg16587 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 260.8 bits (665), Expect = 7.0e-70
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MADDNPDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+V AAG V KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRK
Sbjct: 1   MAD--PEVAAAGIV-KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of Carg16587 vs. TAIR 10
Match: AT5G43640.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 255.0 bits (650), Expect = 3.9e-68
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 6   PDVTAAGAVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALI 65
           P+V AAG V KKRTFKKFSFRGVDLDALLDMS ++LVK F++R RRRF RGLTRKPMALI
Sbjct: 3   PEVVAAGIV-KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALI 62

Query: 66  KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 125
           KKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA
Sbjct: 63  KKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 122

Query: 126 EFSISYKPVKHGRPGIGATHSSRFIPLK 154
           EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 123 EFSISYKPVKHGRPGVGATNSSRFIPLK 149

The following BLAST results are available for this feature:

BLAST of Carg16587 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924839.1	9.2e-80	100.00	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022980463.1 40S riboso...	[more]
XP_022935167.1	1.0e-78	98.69	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S riboso...	[more]
XP_008438580.1	5.0e-78	98.04	PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosoma...	[more]
XP_038877091.1	2.5e-77	98.69	40S ribosomal protein S15-4 [Benincasa hispida]	[more]
XP_022147501.1	3.3e-77	98.04	40S ribosomal protein S15-4 [Momordica charantia]	[more]

BLAST of Carg16587 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08112	7.8e-74	90.85	40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1	[more]
Q9FY64	7.8e-74	90.85	40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1	[more]
Q945U1	8.7e-73	89.54	40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1	[more]
P31674	1.1e-70	90.97	40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2...	[more]
O65059	4.0e-70	88.24	40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1	[more]

BLAST of Carg16587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZD8	4.4e-80	100.00	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111479845 PE=...	[more]
A0A6J1EAC1	4.4e-80	100.00	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111432206 P...	[more]
A0A6J1IA94	4.9e-79	98.69	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=...	[more]
A0A6J1F4T6	4.9e-79	98.69	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 P...	[more]
A0A5D3CZY1	2.4e-78	98.04	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Carg16587 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04270.1	5.6e-75	90.85	cytosolic ribosomal protein S15	[more]
AT5G09510.1	5.6e-75	90.85	Ribosomal protein S19 family protein	[more]
AT1G04270.2	5.2e-73	90.20	cytosolic ribosomal protein S15	[more]
AT5G09500.1	7.0e-70	88.24	Ribosomal protein S19 family protein	[more]
AT5G43640.1	3.9e-68	87.84	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 106..118 score: 42.93 coord: 118..133 score: 46.98 coord: 86..105 score: 46.13
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 51..136 e-value: 1.7E-33 score: 114.3
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 10..153 e-value: 4.3E-38 score: 127.5
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..153
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 49..142 score: 21.249146
IPR005713	Ribosomal protein S19A/S15e	TIGRFAM	TIGR01025	TIGR01025	coord: 20..153 e-value: 4.9E-71 score: 234.8
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 10..153 e-value: 1.1E-72 score: 244.2
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 56..137
None	No IPR available	PANTHER	PTHR11880:SF50	LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15	coord: 2..153
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 106..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16587-RA	Carg16587-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome