Carg16497 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16497
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S24
Location	Carg_Chr12: 7958465 .. 7961142 (+)
RNA-Seq Expression	Carg16497
Synteny	Carg16497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTGCAGAACCCTAGTGTTGTTGCGCTTCGCTTCACTTCACTTCACTTCATCCTACTCCTCACCAACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTGCCTCTTCTTTCTTCTCTTTTCTTTTAGTTATCTCAATAGCAACATATTGATACATTGAATCTTTCAAGTATTTCTCGGATGACTTTCGTAAGGAAGAATTTAGTATTCGAACTTCCGAGCTCTGTTACTGTTTCCTTTGTTTTAAAGTAGATTCAATGATCCGTACTCAAATTTTTGCAATTGCGTATTGTTTCCGTTTAGTTGATTCCCATTTTTCCTCAGTTATTTTTTTTTATTTTTTATTATTATTATTATTTTTTTATGTTGCGCAAGTTAATTATTTAGTTTGATGTTCGTTCTTTTTGTTGACCTTTACGCCATCTATATCTGCTAACATTCTGTTATAAATTATTATTAGTTGACAAAATTTTAGACGCTATATGGTTCTTACATTCTTTGAAGCTTTTTCACAATATACATGTTTTGTGAGGCCGCCTCTACTCTGGATTTAATACTCTACAGTTCCTCGATAATTAAACAGAGTAGTGTTAGGCGTCAAATAGAAGAGGGTTAAACACGAACACACTGATATTGGAAAAATAATATGTTTCGTGAGCATGACACAATTTTTTTTTTCTTTTTGGTATTAGATGAGTTCTATGGGTGTTCTTAACCTCTTGTACTCTAGTGGTTGAGAACATCCTGAGAATTTGAGTTTTACTCTTAAGGCCGCAAACACTTTGACAATGGAGCTCATTAGTTCTATTTTAGGCTTTAGTTCTGACTGTTCCCTTTTCTGTTTGATGCAGGTCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTCTAAGGTAAATCTCTTTGTTGCGGCTGTAATTATTTTTCTGCTTTAGTTTAGTTGCAACTTGTGGATTGCTTTCACAATGAATAAGTTTGGCCGTTGCATTTGTTTTCCCTTTTCTTTTTGTATGCTTGAAAAAGCTGCTTACATGCTTCACCCAACTTGTCACAGTTTATATTTTGGTTTTTTTTTCTTTGTTTAGCTATATTATGCCAATAATACATTGTCAAGCTTAATCGTTTTTGTGTATGAAGTCTAATTAATGGAGGATTTGTTTGGACTATTCACGTATTAAATTGTCCCCCCATTTGATTTGGCTTTTGTCTTTTTGATATGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTTTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATCTATGATTCTGTTGAAAACGCTAAAAAATACGAACCCAAGTACAGGCTCATCAGGGTATTTTCTCTTCCTTATCAACATTTCCATCCTTTGATTTGGTTACTATCTTTTCCCTTTTGTTTCCTTGGAGGCTCTGCCCGCACATATATTGTGTTTGATGCAAAGTTACTGTTTGAGGTTCTAACTAGAGCTTTTGTTAAAGGATTCAATACTAGTTTAAAAATACGGACACTGCTTTGAGCATTGTGTGTCGAAGAGTAGTGGTATACATGTTGAGTTCCGATTTGGAGACACGGGACAAATGTAGAGGGGTAGGGGTAGGGGGCACATTAGGATACAATTGGGTTACATGGAGGTGCATAGCCAAATGAAGTTAAAAGATGGTGAAAAAATGATAATTCTTTTACGAGGAGACAAATAATGCATCAATTGATTACAGAAGATGGGGGCAGTTCGATTTCACTTGGATCAATCAAAAGAAGTGTGGGGCATGTTAGGTAGAAATTTAGTCGGGGAAGGGACAAATTGGATTGATTAGATAGATCTGAAAGAAGTGTAGGCAGTTGAGGGAATAATGTCTGAGATGCTGGTTTCTTTGTTTGAAAGATTTGCTTTGAGGCGTACTCTACTTTAATTTGCTGTTGCAAGATGCGTACATGTTTTATAAGTGAGCCATTTTGGCGAATTGTATGATAAAAGGTCATGGGATTCAATATCTTTCAATATAGCTTTTTCCTGTCTTGATGCAAAGAATTGGCTTATTATCTGAAATCAAGTGTTGTTATCTTGTTACAGAATGGACTTGACACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAAATCCTTCGCTTTGTTCTAAACATGAAAGAAAATATCACAACATTTACTAATAATGGCTGCAATTTCTTGGACCAGACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAAGAGTCTACTGCTGGGATTTTGTGCCTCTGCCCTTTTCTCTCTTATCATTTCTTCATTCCATCTCTCACTTAGCTCTAGTTCTAAAGTGGTGTGTAGCCATTTTTGAAATGAAATCGACCTCCGGAGAATTGTTGACACCCAATGTTTTAGCAAGCCTTTTTTGAAATGAAGTCTGTCAATGTCTGAAGAATTATTATTGACACCAAAATGTATTTTGTTGTTCAGGGTTAAAACTGAAAGGTATTTTGATTGCAAAACAATTTTAATGGTGTTTTTTTTTTTTTT

mRNA sequence

TCTTTGCAGAACCCTAGTGTTGTTGCGCTTCGCTTCACTTCACTTCACTTCATCCTACTCCTCACCAACAATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTTTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATCTATGATTCTGTTGAAAACGCTAAAAAATACGAACCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGAAGAGTCTACTGCTGGGATTTTGTGCCTCTGCCCTTTTCTCTCTTATCATTTCTTCATTCCATCTCTCACTTAGCTCTAGTTCTAAAGTGGTGTGTAGCCATTTTTGAAATGAAATCGACCTCCGGAGAATTGTTGACACCCAATGTTTTAGCAAGCCTTTTTTGAAATGAAGTCTGTCAATGTCTGAAGAATTATTATTGACACCAAAATGTATTTTGTTGTTCAGGGTTAAAACTGAAAGGTATTTTGATTGCAAAACAATTTTAATGGTGTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATACGAACCAGAAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCAAACGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTTTTTAAGTTCCGGACTCACTTTGGAGGTGGAAAATCTACTGGGTTTGGTTTGATCTATGATTCTGTTGAAAACGCTAAAAAATACGAACCCAAGTACAGGCTCATCAGGAATGGACTTGACACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGACGCTGCCAAGGCTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Carg16497 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG7020892.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. NCBI nr
Match: KAG6588329.1 (40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 36  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 95

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 96  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 155

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 156 GVKKTKASDAAKAGKKK 172

[Close]

BLAST of Carg16497 vs. NCBI nr
Match: XP_008462725.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S ribosomal protein S24-1-like [Benincasa hispida] >KAA0062600.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK29716.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.4e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. NCBI nr
Match: XP_004142519.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein Csa_007581 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 9.8e-65
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Carg16497 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.8e-60
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Carg16497 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-58
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

[Close]

BLAST of Carg16497 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-38
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKLA++Y V   + +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKTKASDAAK 133
           G KK+K   AAK
Sbjct: 121 GTKKSKVGAAAK 131

[Close]

BLAST of Carg16497 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Carg16497 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-36
Identity = 86/132 (65.15%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKT 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K 
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 124

Query: 126 KASDAAKAGKKK 138
                  AGKKK
Sbjct: 125 NVG----AGKKK 131

[Close]

BLAST of Carg16497 vs. ExPASy TrEMBL
Match: A0A6J1I401 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. ExPASy TrEMBL
Match: A0A6J1F3Y6 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. ExPASy TrEMBL
Match: A0A5D3E1B6 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00280 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. ExPASy TrEMBL
Match: A0A1S3CHL4 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAKAGKKK
Sbjct: 121 GVKKTKASDAAKAGKKK 137

[Close]

BLAST of Carg16497 vs. ExPASy TrEMBL
Match: A0A0A0LYE3 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKTKASDAAKAGKKK 138
           GVKKTKASDAAK GKKK
Sbjct: 121 GVKKTKASDAAKGGKKK 137

[Close]

BLAST of Carg16497 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 230.7 bits (587), Expect = 7.0e-61
Identity = 119/132 (90.15%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA DA K
Sbjct: 121 GVKKTKAGDAKK 132

[Close]

BLAST of Carg16497 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-59
Identity = 115/132 (87.12%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKTKASDAAK 133
           GVKKTKA D  K
Sbjct: 121 GVKKTKAGDTKK 132

The following BLAST results are available for this feature:

BLAST of Carg16497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933090.1	3.4e-65	100.00	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso...	[more]
KAG6588329.1	3.4e-65	100.00	40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008462725.1	4.4e-65	99.27	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S riboso...	[more]
XP_004142519.1	9.8e-65	99.27	40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein C...	[more]
XP_008455742.1	1.7e-64	98.54	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]

BLAST of Carg16497 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	9.8e-60	90.15	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	5.4e-58	87.12	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	2.1e-38	63.64	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.5e-36	65.15	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	1.5e-36	65.15	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Carg16497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I401	1.6e-65	100.00	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1	[more]
A0A6J1F3Y6	1.6e-65	100.00	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=...	[more]
A0A5D3E1B6	2.1e-65	99.27	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHL4	2.1e-65	99.27	40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1	[more]
A0A0A0LYE3	4.7e-65	99.27	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1	[more]

BLAST of Carg16497 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	7.0e-61	90.15	Ribosomal protein S24e family protein	[more]
AT5G28060.1	3.8e-59	87.12	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 3.8E-59 score: 200.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..137
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 8.3E-36 score: 121.8
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..137
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.675739
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16497-RA	Carg16497-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome