Carg16489 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16489
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein translocase subunit SecA
Location	Carg_Chr12: 7866579 .. 7870494 (+)
RNA-Seq Expression	Carg16489
Synteny	Carg16489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAGAAAACTGACTAAAACCCTAATTCCAAGCTGAAGAAGCCGATTCAGAACTCGTGCATTTTCCGAAAATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTGTTCTTCCCCTTCTCTTCTTCCGATCGCAGTCCCCGACATTGTGTTTCGACTCTGTTACAGTCCCGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGACAAGATCAAGGGAGCCTTTACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGTACGCCTCATTTCCCATCACTTAAAGTTGTATTTCTTCAATTGCACGGTAATATAGCTAAGTTTATGACCAAATTTAATTATTTGTCTGTTTATTTATCTCAGGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGGTTGGTTTTCTAGCAATTTGCTTTCTAATAATTACTTATTGTTTGAGTTCCAATGGAAAAGATATAATGTCTGACCTTGATGTAATGGTTCTTACACTGCCCATAAATGGAGTATTTGTTAATCTTCACTATGAGCCACTGGTAAAGTAGAAAACAAGAGGGAAAAATAGGACAATGAGGTTAGTTTAGTTTTGGCCAAATTTAGAAATGTATATTTTACTGCTGAATAATTTGAGCTGCCACCATTTTTCCAGCAGATTGAAAACATAGGTCTCCTTTTCCAGATTTTCTAGCACTCATTGTTCTTGTAGGACAAAATTTCGTTAATTCAGTGAGTAGGAAAGGCAATGAAACCTTTCACTGAACCCAATGTGGTTACCAAAAAAAACCTCAAACTAGCACTAATATCTGTTGAATTAAGTGAATAAAGCTGTAACTAATTCTCGCCCAATCAAAAGACAAACCCTCGTAGGAGTTCCTAACTTACTGATAATTTAGATTGGGTCACACATGGTCATCTTATGAAACATTAATTCTCAGTTAACGAATTTATAAAGAAAGACTAAATATTTTGTTGTCTAGTCTTAAACAAACTTATTTATAGGATACCCCACTCACATGTCTCCAAGTGAATGATTTGGACATTGATATAACCATTGCAAAATAGGGGGCTTAAGTGAATAAAGGCCCCTGTTTTGTTTAATCCAATTGACCAAATGGGAGCAAAGGAAGTTGTTGGGGTCTTTCTGCAACCATTACTGTGTTTAATGGTTTGAAATGTGTTTTTTGAAGGGGGTTAAGCCTGAAGTGAAAAAAAGCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTCTTTTTTTGTTTTTGGCTTACAATATAAAAATAGAAAAATGTAAAAAAAAATTCTAGATCTGAAAAATGTAGTGAAAGGAAAAATAAAAATGAGACAGAGAATATAGTATAATGTATAATAAGAATGGAAAAATTTTAAGAAATAGAGCTTTTGTAAGAGATGATTGAGAGGAAAGAGTGTTTTTAAGAGTGTTTAATTTTCTCAAAAAAGATTACAAAAAGGACTTGAGGTATTGATGCATGCTGTGTGCCTCGATGTGCTTCAGTGAGGATACAATGCTTCAATGCTTCACTTTAAAAACACTGGGTTTGAAATTGATTTAGTTGTTTCACGTTTTGGTACTACAACATTTGATGATTAAGAAATACGTTACATAACTTGACTTCCTAACCAGCTTTGGGATTCATGACCACTTGGTTGAACCGGAAGGGCTTTCCATTATGATCAGTCTTTCAGCACTTTCACAGCTATTTGATTTCTTCAATTGAATTCTTAATCTTATTTTCTGTCAACTGACAGTCCGGCATGATTTAGAGTTGTTTCCATGGGTCTATAACATTCTTCTTTTATTTGGTGAATTGGCTCCATTTTCTGTCTATGATAATTCATTAGCTGGGTTTTTATCATCTGAGTTAGTGAAAATAATAACGAATAGAGTTACGCTAACCTTTATTTGTTTCCAACAGTTTCCATATTAATTTGCGCTTCTGGATAAGTTTTCTGATTGTGATCTTAGGCTTCCTGATCTTTAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCTGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCCAAGAGCTTAGCTGAGGTAGATCTTTATACATATAGTTCCATGTTCTTAAGAACTAAAGTTTACCGTCAACATTGCCATATCTAGCCAAAGAAAGTAGTTATTGTATGGATACATTGCAAAGCTCTTATCCTTTTCTGTTAATACGACTCGGTTCCTTCTGCTTTTGTACCACTCTGAGAACTGACAAGGGCTTGGAGTTTCCTGTTTTCTGGTCCTGCTTTCCGGCATACTTTTTATATTTTTTTATAAATATATTGATTTTTTATTTTTTAAAAGTTGTGACAATGCTCAACTGATCATGTTTGTTTACAAATTATGTTTACTAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTATTTAACTTAGAACCGTTGCTTAATTATTGAATTACAGTAGAACTCAAAATGTCTTTTCATTGAGCTTACCATCAATCCTCAATTCATAGCTTAAAACAAAGCAAAACCAGAAAGAAGATGATCATCCTTTGAGTAATAGGTTACTATGCAATATACCCTTGGAGTTGTTCTACTTTAGCTGAGTAAGTTAGGGTAGAACTTTGGTTCTTGGATGATGTAACTGTCCAGAAACCGATCACTGGAATGTTGATCATTTTTGTATTGCCCATCTTACTGATGGTTCCAAATCACTTTTATAAGCCCGTTGATCTTCTGCCTGGCCGCAGAGAACCCATCACCACGACAATGCTTGCTTGCAATGTAGCCCCATAGTCGTTCAGTTTTATCCTTCCAACTCGCCATGGACATCTGGCTCCTCTTTCCTTGTGCAAGTCTGATTTTAAAAATGTGTATATACTTCTGTTTAGCATGGATTTCTTATTACTTCAATTATTTTTGTTTTTTTGAAGGTGCTGCGGGAAGGATCAAACGGCATAGGAAGAGAACTTGTTTGTCTGTTCCCTGTTTCTTGACTGAATAAGTGGCAGTTCATAAGGATTATGTTAGCTTGATCTTTCTATTTTATTTTACCTAGTTGGTTAAGCCATTTATGGAGGGAATGAGACGTTGGCATGGTTTTTAAATGCGTCAAATCCTCGTGATCCTTCACGGGACCTTCAATATGTAGTCTCGTGACAATAGTTGAGGTGCGCCGATCTTGCAAATATAGCAAGGCCAGGCTATTGTCTCGTGACAATAGTCGAGGTGCACTGAAGCTGGCCCTAATTATTGTGGGAAAAAATGTGGAATGTATTCCTTGATCCTCGGTAGATCTTCAAATTTCACCTGAATGAGTTGGATTTTGCTGGGGGCTATTATTCATTAATTATATATGATGTTTGAGTACCTAAAAGTACATTTCCGGCTAAAAGATATTCTTCGTTTTGGCTCGTTTCCTTTCATTACCAGCTTTTCGGTTTTAGTATAATGATCGGTTTTGTAAAAGTTTTCCCACCCTTGTGGTTATGTAGAAGTTTTTTTTGTTTAAAATTGTACTGAATAATTATAAAGGGTAGATAAATA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAGAAAACTGACTAAAACCCTAATTCCAAGCTGAAGAAGCCGATTCAGAACTCGTGCATTTTCCGAAAATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTGTTCTTCCCCTTCTCTTCTTCCGATCGCAGTCCCCGACATTGTGTTTCGACTCTGTTACAGTCCCGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGACAAGATCAAGGGAGCCTTTACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCTGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCCAAGAGCTTAGCTGAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTGCTGCGGGAAGGATCAAACGGCATAGGAAGAGAACTTGTTTGTCTGTTCCCTGTTTCTTGACTGAATAAGTGGCAGTTCATAAGGATTATGTTAGCTTGATCTTTCTATTTTATTTTACCTAGTTGGTTAAGCCATTTATGGAGGGAATGAGACGTTGGCATGGTTTTTAAATGCGTCAAATCCTCGTGATCCTTCACGGGACCTTCAATATGTAGTCTCGTGACAATAGTTGAGGTGCGCCGATCTTGCAAATATAGCAAGGCCAGGCTATTGTCTCGTGACAATAGTCGAGGTGCACTGAAGCTGGCCCTAATTATTGTGGGAAAAAATGTGGAATGTATTCCTTGATCCTCGGTAGATCTTCAAATTTCACCTGAATGAGTTGGATTTTGCTGGGGGCTATTATTCATTAATTATATATGATGTTTGAGTACCTAAAAGTACATTTCCGGCTAAAAGATATTCTTCGTTTTGGCTCGTTTCCTTTCATTACCAGCTTTTCGGTTTTAGTATAATGATCGGTTTTGTAAAAGTTTTCCCACCCTTGTGGTTATGTAGAAGTTTTTTTTGTTTAAAATTGTACTGAATAATTATAAAGGGTAGATAAATA

Coding sequence (CDS)

ATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTGTTCTTCCCCTTCTCTTCTTCCGATCGCAGTCCCCGACATTGTGTTTCGACTCTGTTACAGTCCCGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGACAAGATCAAGGGAGCCTTTACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAGGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCTGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCCAAGAGCTTAGCTGAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTGCTGCGGGAAGGATCAAACGGCATAG

Protein sequence

MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIKGAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA

Homology

[Close]

BLAST of Carg16489 vs. NCBI nr
Match: KAG6588322.1 (hypothetical protein SDJN03_16887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020884.1 hypothetical protein SDJN02_17572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 457.6 bits (1176), Expect = 6.4e-125
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK
Sbjct: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 234

[Close]

BLAST of Carg16489 vs. NCBI nr
Match: XP_022932559.1 (uncharacterized protein LOC111439055 [Cucurbita moschata])

HSP 1 Score: 451.1 bits (1159), Expect = 6.0e-123
Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LINLSETNTSNLNLFFPFSSSDRSPR+CVSTLLQSRSIFSTTQLYDSWMDKIK
Sbjct: 1   MRSSSRVLINLSETNTSNLNLFFPFSSSDRSPRNCVSTLLQSRSIFSTTQLYDSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKSPSEGTEISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GAFTGKKSPSEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 234

[Close]

BLAST of Carg16489 vs. NCBI nr
Match: XP_023530731.1 (uncharacterized protein LOC111793188 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 448.0 bits (1151), Expect = 5.1e-122
Identity = 229/234 (97.86%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPR+CVSTLLQSRSIFSTTQL+DSWMDKIK
Sbjct: 6   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRNCVSTLLQSRSIFSTTQLHDSWMDKIK 65

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKS SEGTEISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 66  GAFTGKKSSSEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 125

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 126 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 185

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKS+AEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 186 MPKSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 239

[Close]

BLAST of Carg16489 vs. NCBI nr
Match: XP_022965948.1 (uncharacterized protein LOC111465670 [Cucurbita maxima])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSRFLINLSETNTSNLN  FPFSS DRSPR+CVS LLQSRSIFSTTQLYDSWMDKIK
Sbjct: 1   MRSSSRFLINLSETNTSNLN--FPFSSFDRSPRNCVSALLQSRSIFSTTQLYDSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 232

[Close]

BLAST of Carg16489 vs. NCBI nr
Match: XP_038878551.1 (protein translocase subunit SecA 1 [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 1.9e-108
Identity = 206/233 (88.41%), Postives = 217/233 (93.13%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LIN S+ +T N NLFFPFSSSD SPR+C  TLLQSRSIFSTTQL  SWMDKIK
Sbjct: 1   MRSSSRALINFSKKSTWNPNLFFPFSSSDHSPRNCDLTLLQSRSIFSTTQLNGSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           G  TGKKSPS+GT+ISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVITGKKSPSDGTDISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVEN LAKF+WAK+AQ KIEKLK EGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENVLAKFMWAKQAQTKIEKLKAEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT 234
           +P S+AEVQKLVGSNPLDLARSNLAKSGQ+SRNALCPCGSKKRYKRCCGKDQT
Sbjct: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQMSRNALCPCGSKKRYKRCCGKDQT 233

[Close]

BLAST of Carg16489 vs. ExPASy Swiss-Prot
Match: A6TLE7 (Protein translocase subunit SecA 1 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=secA1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.0e-05
Identity = 40/162 (24.69%), Postives = 72/162 (44.44%), Query Frame = 0


Query: 74  EISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAI-----IRYLGGF 133
           +I   S  L    EE   A R+   ++ IV +  +  + D  +  + +     +R +G  
Sbjct: 745 QIYETSEKLYEAKEEEIEAERMRELERIIVLQVIDTKWMDHIDAMDQLRQGIGLRAIGQI 804

Query: 134 DPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEV 193
           DP       + + E     N  I  ++    K+++  E Q K+E+ K+  KP+  S  + 
Sbjct: 805 DPV-----RAYQVEGFDMFNAMINSIQEDTVKYLFNVEPQAKVER-KQVAKPIEASHGDG 864

Query: 194 QKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGK 231
            +          ++ + K  +  RN  CPCGS K+YK+CCG+
Sbjct: 865 NR---------KKAPVVKEKEAGRNDPCPCGSGKKYKKCCGE 891

[Close]

BLAST of Carg16489 vs. ExPASy Swiss-Prot
Match: A4J927 (Protein translocase subunit SecA OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=secA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.5e-04
Identity = 41/163 (25.15%), Postives = 74/163 (45.40%), Query Frame = 0


Query: 74  EISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAI-----IRYLGGF 133
           E+   + +L +  EE   A  +   ++ ++ R  +  + D  +  + +     +R  G  
Sbjct: 727 ELLERTMSLYQKREEELGAETLREIERIVLLRLVDEKWMDHLDAMDQLREGIGLRAYGSK 786

Query: 134 DPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEV 193
           DP  E      K EA +  N  IA++++ + ++I+        E+ + +   +    AE 
Sbjct: 787 DPVIE-----YKFEAYEMFNNMIANIQDDVVRYIFRVNVAAPQERTQRQ--VVENRYAEE 846

Query: 194 QKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 232
           +   G  P       + K  QI RN  CPCGS K+YK+CCGK+
Sbjct: 847 E---GKQP-------IRKENQIGRNDDCPCGSGKKYKKCCGKN 872

[Close]

BLAST of Carg16489 vs. ExPASy TrEMBL
Match: A0A6J1EXB8 (uncharacterized protein LOC111439055 OS=Cucurbita moschata OX=3662 GN=LOC111439055 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LINLSETNTSNLNLFFPFSSSDRSPR+CVSTLLQSRSIFSTTQLYDSWMDKIK
Sbjct: 1   MRSSSRVLINLSETNTSNLNLFFPFSSSDRSPRNCVSTLLQSRSIFSTTQLYDSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKSPSEGTEISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GAFTGKKSPSEGTEISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 234

[Close]

BLAST of Carg16489 vs. ExPASy TrEMBL
Match: A0A6J1HQG1 (uncharacterized protein LOC111465670 OS=Cucurbita maxima OX=3661 GN=LOC111465670 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSRFLINLSETNTSNLN  FPFSS DRSPR+CVS LLQSRSIFSTTQLYDSWMDKIK
Sbjct: 1   MRSSSRFLINLSETNTSNLN--FPFSSFDRSPRNCVSALLQSRSIFSTTQLYDSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 235
           MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA
Sbjct: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA 232

[Close]

BLAST of Carg16489 vs. ExPASy TrEMBL
Match: A0A1S3BPC0 (protein translocase subunit SecA OS=Cucumis melo OX=3656 GN=LOC103492237 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.9e-106
Identity = 202/233 (86.70%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LI LS+  T N NLFFP SSSD +P +C  TLLQSRSIFSTTQL+ SWMDKIK
Sbjct: 1   MRSSSRALIKLSKKTTWNPNLFFPVSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           G  TGKK+ +EGT+ISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVITGKKTTTEGTDISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFD TGENIQTSQKQEAAK CNCTIADVEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDATGENIQTSQKQEAAKNCNCTIADVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT 234
           +P S+AEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT
Sbjct: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT 233

[Close]

BLAST of Carg16489 vs. ExPASy TrEMBL
Match: A0A0A0LWL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573720 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.6e-105
Identity = 199/233 (85.41%), Postives = 214/233 (91.85%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LIN S+  T N NLFFPFSSSD +P +C  TLLQSRSIFSTTQL+ SWMDKIK
Sbjct: 1   MRSSSRALINFSKRTTWNPNLFFPFSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           G  +GKK+ +EGT+ISSESFTLLRFA+ELKNARRVGA KQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVISGKKNSTEGTDISSESFTLLRFADELKNARRVGALKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFD TGENIQTSQKQEAAK CNCTIA+VEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDSTGENIQTSQKQEAAKNCNCTIAEVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT 234
           +P ++AEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT
Sbjct: 181 LPTNIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQT 233

[Close]

BLAST of Carg16489 vs. ExPASy TrEMBL
Match: A0A5D3CG47 (Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003190 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.4e-101
Identity = 195/226 (86.28%), Postives = 207/226 (91.59%), Query Frame = 0


Query: 1   MRSSSRFLINLSETNTSNLNLFFPFSSSDRSPRHCVSTLLQSRSIFSTTQLYDSWMDKIK 60
           MRSSSR LI LS+  T N NLFFP SSSD +P +C  TLLQSRSIFSTTQL+ SWMDKIK
Sbjct: 1   MRSSSRALIKLSKKTTWNPNLFFPVSSSDHNPHNCYLTLLQSRSIFSTTQLHGSWMDKIK 60

Query: 61  GAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120
           G  TGKK+ +EGT+ISSESFTLLRFA+ELKNARRVGAFKQYIVGRSSEATFADAFEKQEA
Sbjct: 61  GVITGKKTTTEGTDISSESFTLLRFADELKNARRVGAFKQYIVGRSSEATFADAFEKQEA 120

Query: 121 IIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKP 180
           IIRYLGGFD TGENIQTSQKQEAAK CNCTIADVEN L+KF+WAKEAQKKIEKLKEEGKP
Sbjct: 121 IIRYLGGFDATGENIQTSQKQEAAKNCNCTIADVENALSKFLWAKEAQKKIEKLKEEGKP 180

Query: 181 MPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKR 227
           +P S+AEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKR
Sbjct: 181 LPTSIAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKR 226

[Close]

BLAST of Carg16489 vs. TAIR 10
Match: AT3G04950.1 (CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). )

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-76
Identity = 141/192 (73.44%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 41  QSRSIFSTTQLYDSWMDKIKGAFTGKK-SPSEGTEISSESFTLLRFAEELKNARRVGAFK 100
           Q RSI ST  L + WMD IKG FTG K +P E + +  E+FTLLRFA+ELKNARR+G FK
Sbjct: 41  QQRSITSTAPL-NGWMDSIKGVFTGNKDTPLEESNLPVEAFTLLRFADELKNARRLGKFK 100

Query: 101 QYIVGRSSEATFADAFEKQEAIIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLA 160
           QYIVGRSSEATFADAFEKQEA+IRYLG  D TGEN+Q SQKQ+AAK C CTI DVENTL+
Sbjct: 101 QYIVGRSSEATFADAFEKQEAVIRYLGALDATGENLQASQKQDAAKHCKCTITDVENTLS 160

Query: 161 KFIWAKEAQKKIEKLKEEGKPMPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCG 220
           KF WA++A KK+ +LKE GKP+PK++ E+QK++GS P+DLARSNLAKSGQISRNALCPCG
Sbjct: 161 KFTWARQAHKKMTELKEGGKPLPKNMGELQKMMGSTPMDLARSNLAKSGQISRNALCPCG 220

Query: 221 SKKRYKRCCGKD 232
           SKKRYKRCCGKD
Sbjct: 221 SKKRYKRCCGKD 231

The following BLAST results are available for this feature:

BLAST of Carg16489 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588322.1	6.4e-125	100.00	hypothetical protein SDJN03_16887, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022932559.1	6.0e-123	98.72	uncharacterized protein LOC111439055 [Cucurbita moschata]	[more]
XP_023530731.1	5.1e-122	97.86	uncharacterized protein LOC111793188 [Cucurbita pepo subsp. pepo]	[more]
XP_022965948.1	3.7e-120	97.86	uncharacterized protein LOC111465670 [Cucurbita maxima]	[more]
XP_038878551.1	1.9e-108	88.41	protein translocase subunit SecA 1 [Benincasa hispida]	[more]

BLAST of Carg16489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6TLE7	9.0e-05	24.69	Protein translocase subunit SecA 1 OS=Alkaliphilus metalliredigens (strain QYMF)...	[more]
A4J927	4.5e-04	25.15	Protein translocase subunit SecA OS=Desulfotomaculum reducens (strain MI-1) OX=3...	[more]

BLAST of Carg16489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXB8	2.9e-123	98.72	uncharacterized protein LOC111439055 OS=Cucurbita moschata OX=3662 GN=LOC1114390...	[more]
A0A6J1HQG1	1.8e-120	97.86	uncharacterized protein LOC111465670 OS=Cucurbita maxima OX=3661 GN=LOC111465670...	[more]
A0A1S3BPC0	1.9e-106	86.70	protein translocase subunit SecA OS=Cucumis melo OX=3656 GN=LOC103492237 PE=4 SV...	[more]
A0A0A0LWL6	1.6e-105	85.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573720 PE=4 SV=1	[more]
A0A5D3CG47	2.4e-101	86.28	Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Carg16489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04950.1	2.6e-76	73.44	CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 99..231 e-value: 7.0E-7 score: 31.8
None	No IPR available	PANTHER	PTHR36750	SEC-C MOTIF PROTEIN	coord: 33..231
None	No IPR available	SUPERFAMILY	103642	Sec-C motif	coord: 210..230
IPR004027	SEC-C motif	PFAM	PF02810	SEC-C	coord: 212..230 e-value: 1.1E-6 score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16489-RA	Carg16489-RA	mRNA