Carg16487 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16487
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	Carg_Chr12: 7840933 .. 7847105 (+)
RNA-Seq Expression	Carg16487
Synteny	Carg16487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGTATGTTTATGTGTGATTTTAATCAATTGGGTCAGTTTGGTTGCTCGGAGATTGTTAATTATTAGGGATTTGATATGGGGAAGATTTTTTTTCCACTGGATTTGGATAGTATGTGGTGTAGATGTTTGGAAATTGAGTATTTGATGATTGTTGTTTCGTATATTCGGATTAGGGAAGATTTTTACTGAATTTGAAATGAGATTGAATTGATGCAAAGTACTTTTTAGCTAACTAGAAAGCTTATCTACTTTTTCATGGGACTTGAACAACAATAGTTTCGAATTAGATGAAGCCTTGGTTTCGTGCCTCTGGATGTAAATAGAAATGCTTCACTTAATAACAGTCCTATCAAAATCTGTCGTCAGTTGTCACGCAGATGTATTGTCATACCTCTCATTTAGTTCATAACCCTTTTAGTTCATATTCCCATTTATTTGGTTCATGTATGAGAATTAGTATTGCTATACCTAGATAAAGGCTTGCTTAGCATTGCTTTGAGGTGTGGAGTCATTGTGTGATGTCCCATATTGGTTGGAGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAAAGGGAAAGCTCAAAGAGGACAATATCTGCTCGCAGTGGATCTGGGCTGTTACAAATGGTATCATAGGCAGACACTGGACTATTTGCCGGCTGTTCCCCAAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGTGGCGGTTCCACATCGATTGAAGAAAGGAACGAGTGTCAGTGAGGACGCTGGGCCCCGAAGGGGGGTAGATTGTGATGTCCCCACACTAGTTGGAGAGGAGAACAAAATACCCTTTATAAGGGTGTGGAAACCTTCTCCTAGCAAACGCGTTTTAAAGCCTTGAGGGGAAGCCTGAAAGGGAGAGCTCAAATAGGACAATATTTGCTAGTAGTGGATCTGGGCTGTTACACATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTTGTAGTGTGAGAGTGTGAGAGATACACTTGTAAACACTTTGGTTATAGTGTGATTGACTACCACCTGTCGATGTAGGAGAATTTATTCTCTCCAATCCACGTAAATCTTTGTGTCTCTTTGTTTAATTTTCTGTTTGTGAGTGTGAGTGCGACCAATCTTGCTTTCGCTTAGGCTACAACAAATGGGTATCAAAACATTTTGGTTGTGGCGTTTGGGTACAACAAGTGGTATCATAGCATTAAAGGTTGTGGCATTACGGCACAACAAAGTCATTCCGAACATTTAAAATGAATCAAATAATACTTCTGTAACTGTCTACGAATCTGTTGTTCTGGCTCAGCTATCGTAATAAAAATGGACTTAAATAGGTGGGAACTCCACACTCTTTCTTGAGAGGACCTTTAGTATGTTGAATAAGAAAAGAAGAAAAGTTCTTGGAAATCTCAATGGCATGGTCGTAAGCTGTCATACAACCTCCCCTGTGTGCTTCTCACATAGTTTGTGTATTTTGTGCAAAAAAGTTGGAAGACCATACCCATCTGTTCTGTTCCTTCAGTCAGAAGCCTTGATGTTCTTGTGCTGAAGTGTTCAATCTGTTGGAGGGTCTTTTAGTGTCTATCACAGGGAACCTTTGCCAACCCCATCCTTTTAAGCGGAAAGTAAATGTGTTTTGGAATTATATTATCAAAGCGGTATGTGGGAGGTGTGGTTGGACACTGGTTGATGTAGTATGGTAAAGGGTGAAGTATGACAATTAGAATCTATAAAACAAAGGAGTGGGAAATAAAGATTCAACGAGATAGTAAACAAACGGAATCTTTAAGGGTCGGGAATCATAGATTCGACCAGTAAACCGGAGAAACATTATTCTTACTGGGTCGTGTTTCCATGATTTGTTTCTTAAAGAAGCAATTTCATTCATGAAGGAAATTTACAAAAACAGAGGACAAAAGCCTTGATCTGAAGCATTTACAATAAACATTTCCAATTGGACTAATTATTGTTGGTATGATATTCTTGATACATTGAAGAAGACGATTAAGGAGGATTTCATGTTGGATCCTGTCCATGTAGAAATGGGGAGATTTGTGCGTCTACGTTGGATGGTGACTGTAGGTGACTTTGCTATGAACTTCGAAGATTGGAATGAAAAAAAAAAAAATTATTAGCCAGCAGAGATGTTACTTTGTAGGTGAGTAAAAGTGTTACCTTGTTTATGGAGGTTTATTCATTAATAGGTGGATGAAGGAGGTCTCAAACCATTGGAGAATAATGTGCGTATTCTATTTCTCATGCCCGTGCTATGAAAAGAAGAAACAATGCAAAACGTTCACCCTATCTTTTCTCCAATCTTCGGGGGTAGTTGCTGCTGAAAGTCAGGAAGGTTGTTTGATACAATGCCACTACAAGTGTACACACGTTACGCTCATGGCAAAAAGAAGCAGTCATGTATGGAACCCATTAGTTGAATTGTCTTCCACCTTCATTTTGATTTTTTGGTTATTCCCTTGTTTTAGATTAAGAAAATTTCTCAAATATTGGCTAATCCCTACTCTCTCCCACAACAACACTGTTAAGGGCTCAAGTCTGGGATCGAGTTATGGATCTCTCGTAAGTGGAGGTAGACGGTGTTTGTGTGGGGGAAAAAGTAGAATTCTTCTTTCGACCTATTTTGAATAATTGTAAGGCTCAAATAGAGGGAACCTTAAACCTTTGAGTTAAAGTACTCAAGACTAAATTGGAAATTTTAGGTACCATCTTCATTGATGTTTATGACTATTTGTACAAGTTGTATGATAATCATTGCTACATCAATGGAACCATGACTCAATCATGGAGGATCATCCTCCTAGAACAAAGGAAATAACTAAAAATAGAAATGAAAGTGGAGTCCTTGCAACCATTGTTATATTAATAGAGCCATGACTCAATCATGGAGGATCATCTTCTACTAACACCAGTTCTTCAGGAAAGGAGGAGAAAAAGAGGAGGAAAATCAAATGGGGAAGGTTTCTCGTCTAAGACAAGAAATGAATAGGCACAAATTGAGGAATTTCATTCTGCCAAAGCTGAGCATCAAGTAATAGATTATGGGTCAAAACCATCGAATTTAAATTTGAATTTGAATTTGAATCATCAACTACTGTATTTAGTTGAACTTCATCCTCCCAACACTCCATCTTCCATTACTTGGTGAAGAAGAGGTTAATCACTGAATTTGAGAAATTATTCAAGCGTAAGTCACCATAAACAACTCCCAGAGGATCCAAGGAAACTATATCTCCAAGCTTAAAGGAAACGTTGCGACGTTTGTTGTAATAACGTTGAACCACAAAGGTTGCCGGAAAATTTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTAATTCAACCATCGAAGTAATAATCAAATGCCTCAAGAGTGTTTTTTTCGGTACTTAAACAGTTAGTTTTTAATCGAAATCCATCCCCCATATCCTTTAATTAACTTTTGATGACTATGCTTGTATGAAACCAGTTCTCAATCTTCAGATGTAAATCACCAACCAATTGCCATTTTCCCAACACACATAAATCAATGCTTTATCAGTTATTAAGGAATTGATCTGCACTTAAATTTTAAAGTATGCTTCTGCTGAAGTTTTGATATCCTTCCAAGAAATATGCACAAACAGGTGACTTACCACCAAGAAACTTTCAAAATCCATTCTAACCACTTCATGAGGTTTGTGTAAGACTATTGGATATTTCTGATGTTGTTTGTTAGTTGTTATCTTATTCATCTATTTAATGAATTGTATTGGATGTTCTTTTTATGTTTAAAGGTAGAAATTTACAATAAAGGTATCAAATATTCATAATTTGTCGAAATATATGCATATTTAAGGGGGGGAAATTAACATGTCGTGTCCTACTTTTTTGAAAATCGATGTAATGATATTTCCATGTCGTATAGTATCCAATGTCGTGTATCTATGTCTGTGCTTCTTAGCCCACCAATTAACCCCAACTCAAATGCCAAAAAATGCTGCTCTATAGGATGGAAGTTGGTCATTTCAAGTTATTTTTCGCCAAAATTGATGCTTGAGAGACCATTTTAAAGAATTAAAAAAATGACATTGAAACCGAAGATTCGGAAGTTGTGTCAATCACACATGTTTACACTAACCAATCGAATTTGTTAATTCAGTTTCGTTGTTGTCTTATTTTTTCAAATTTTGGATTAGACCCCTATTGCTCTTAGGCCAACCTTCGGAGCCATTTACGTTTGAGCATAACATTCTTTCTTATCAAATTGTTTATCCCTAAATAACGAATAGCCGGAATCATGGCATCATTTACCCAAAGTACATTGGAGCCCCCATCTCAGAGACAAAACAAACTAGAATTATGCCAATTATGATTATCTGAATTGAAGTCTAGCTTTCTTTCCTTCTTTCTTTCTCTTTTTGTAACATTATCAATTGCTCTGAAGTTTTATATTTCCCAAGGAATTTTCATTTCTTTCTAAACTTAGTAGTGTATATGTTATCGATATATTATGATTACAAAGATGACGTTTTTGTAATACCTTTATTATTTTAGAGTTATGAAAGGGAACTTCATATCTTGGACAAATTGAATATTCAAGCCTTGTAGTTTGTGTGCTACGTACCATATGAACCAACATTTTAAGTTTTCTGTTGTTATGAGTTCCCGCAGGGTTCACTAGTTATTGGAAGTGTCAAATGCACTTTTGACATGGACAAAAGAACTTTTGACTCGAAATGTTTAAGAAAAATCATGTAGGAGAGTAATATAAAATGCTTTTTGAAAAATTGGAAAGTGCCTTGAAATACTTTGTTGTAGAGCGTTATGGTCTATGTGCTTGATTGGGAATTCCTTCCAAAGTACTTTTAAGAATGCATAACCAATTTTACTTTACTTTTTTAAAACCATTTCCAAATACGCTTTTTAAGCATTTGTTAGTGAGTTAGAACATAATATGGGTAACGTAGGAGACATCTCTACTTTTCCCCTCGGGAATCCATAGAATTTACTGTTGCTTAGTTTTCAATTTACCTCTGATCATCAAATGAAATGTGAATAACCTGTCCTCCTCTCTTTGAAACAAGGGACGTTTCTGGTTCTGTCGGTGCTTGAAACAATTTAGTTTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTATTGAAGTCAATCACTTGCTGCCGTTAACTCTTTAGCTTTCTGTTGAGGTCTATTATGTGGAGGTATTCAAATTGGATCAATGATTGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCTAATAGTTCAAGTGAATCAAGGCTAATAGTTCAAGTGAATCAAGGATAAAGTAGCTTCAAGTTTGTTTATGAAACATTTTTTCAATCTTTCTTATTGATTTTCAAGCTTGAGGAAAACTTCAATTGCTCAACGGTTAAAGAATCAGCTAAACGAAGTTATCTGCTTTTGAGTTTCCTAGTAGGACTTATGTTTCTAGTATCATTGCAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

mRNA sequence

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Coding sequence (CDS)

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Protein sequence

MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV

Homology

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BLAST of Carg16487 vs. NCBI nr
Match: KAG7020882.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 7.7e-74
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: KAG6588320.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 284.6 bits (727), Expect = 5.0e-73
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFF+NNVTANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFSNNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-72
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPP SSSKSSFFANN TANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 1.6e-71
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. ExPASy Swiss-Prot
Match: Q9XH46 (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-27
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 6   VTLSFTSS--IP-RLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMD 65
           +TLS +SS  IP RLP+         SS ++N     SF   + + SSLL      KT  
Sbjct: 3   ITLSISSSSVIPTRLPN---------SSCYSN----LSFLSSNSNTSSLLLKKARIKT-- 62

Query: 66  RAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESEL 125
           R  KG TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+EL
Sbjct: 63  RTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETEL 122

Query: 126 KKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           KKEP    E +V       ++EKQ++KVS+ K++V
Sbjct: 123 KKEPNPTEEISV-----ASEQEKQEIKVSSTKDNV 137

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BLAST of Carg16487 vs. ExPASy Swiss-Prot
Match: Q9LKU2 (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKP 137
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EPE     + +  
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQVA 132

Query: 138 TSVDDEEKQDLKVSNQKESV 158
           TS  +EEK+    S+ KE+V
Sbjct: 133 TSNKEEEKKTEVSSSSKENV 147

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BLAST of Carg16487 vs. ExPASy Swiss-Prot
Match: Q9XFJ8 (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 26  SSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVIA 85
           SS++S F         + GD +  +     R R+        L C  LFGLGVPEL VIA
Sbjct: 44  SSRASSFVGG------SGGDLAAVAASVAARPRRAGSGGGGALGCKCLFGLGVPELAVIA 103

Query: 86  GVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETAVEKPTSVDDEE 145
           GVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKEP E   +     PT+V   E
Sbjct: 104 GVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPGEGGDQPPPATPTAVSGGE 163

Query: 146 KQDLKVSNQKES 157
           ++ L+ S+ KES
Sbjct: 164 EKGLEASSSKES 169

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BLAST of Carg16487 vs. ExPASy Swiss-Prot
Match: Q75GK3 (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-21
Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 38  ANSFNKGDHSHSSLLRTTRSRKTMDRAHKG---LTCNALFGLGVPELVVIAGVAALVFGP 97
           A+SF  G     ++    R+R       +G   + C  LFGLGVPELVVIAGVAALVFGP
Sbjct: 46  ASSFVTGGAGGLAVAVAARTRAGSGAGSRGGGAMGCKCLFGLGVPELVVIAGVAALVFGP 105

Query: 98  KKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSV---DDEEKQDLKVS 157
           K+LPE+G+SIGKTVKSFQQAAKEFE+ELKKE +  G+     PT     D  E+++L+ S
Sbjct: 106 KQLPEIGRSIGKTVKSFQQAAKEFETELKKESDDGGDQP-PPPTETAVSDGGEEKELEAS 165

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BLAST of Carg16487 vs. ExPASy Swiss-Prot
Match: Q31RR1 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 74  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKE----PESI 133
           FG+G+PE++VI  +A LVFGPKKLPE+G+S+GK ++ FQ A++EFESE+K+E    P + 
Sbjct: 4   FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREIDRTPATP 63

Query: 134 GETAVEKPTSVDDEEKQDLKVSNQKES 157
            E  VE P  +D    + + V  Q E+
Sbjct: 64  AEATVEPPV-LDSAPTEAVTVEKQTET 89

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BLAST of Carg16487 vs. ExPASy TrEMBL
Match: A0A6J1HYU6 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468153 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.6e-72
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPP SSSKSSFFANN TANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

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BLAST of Carg16487 vs. ExPASy TrEMBL
Match: A0A6J1EWP2 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439076 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.8e-72
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. ExPASy TrEMBL
Match: A0A0A0LWL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.7e-55
Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVISS TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

[Close]

BLAST of Carg16487 vs. ExPASy TrEMBL
Match: A0A1S3BPB0 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of Carg16487 vs. ExPASy TrEMBL
Match: A0A5D3CIV6 (Sec-independent protein translocase protein TATA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003240 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.8e-51
Identity = 119/156 (76.28%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKE 156
           SELKKEPE   ET+VEKPTS + E++QDLK+   ++
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKLLESED 156

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BLAST of Carg16487 vs. TAIR 10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKP 137
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EPE     + +  
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQVA 132

Query: 138 TSVDDEEKQDLKVSNQKESV 158
           TS  +EEK+    S+ KE+V
Sbjct: 133 TSNKEEEKKTEVSSSSKENV 147

[Close]

BLAST of Carg16487 vs. TAIR 10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 72  ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSF-------QQAAKEFESELKK 126
           +LFG+G PE +VI  VA LVFGPK L EV +++GKT+++F       Q  +++F+S L++
Sbjct: 85  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLER 144

The following BLAST results are available for this feature:

BLAST of Carg16487 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020882.1	7.7e-74	100.00	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]
KAG6588320.1	5.0e-73	98.73	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]
XP_023529222.1	3.2e-72	98.09	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022969040.1	9.4e-72	97.45	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim...	[more]
XP_022932561.1	1.6e-71	96.82	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]

BLAST of Carg16487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XH46	5.6e-27	56.77	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
Q9LKU2	1.6e-26	57.86	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
Q9XFJ8	2.1e-21	52.27	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
Q75GK3	7.9e-21	53.60	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
Q31RR1	1.8e-12	47.13	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Carg16487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYU6	4.6e-72	97.45	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita max...	[more]
A0A6J1EWP2	7.8e-72	96.82	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita mos...	[more]
A0A0A0LWL1	8.7e-55	80.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]
A0A1S3BPB0	1.1e-54	79.75	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
A0A5D3CIV6	5.8e-51	76.28	Sec-independent protein translocase protein TATA OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Carg16487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28750.1	1.2e-27	57.86	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	3.0e-07	45.90	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01506	TATBPROTEIN	coord: 73..93 score: 35.53 coord: 93..112 score: 27.65
None	No IPR available	GENE3D	1.20.5.3310		coord: 75..126 e-value: 1.4E-18 score: 68.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
None	No IPR available	PANTHER	PTHR33162:SF6	BNAC07G27450D PROTEIN	coord: 18..152
None	No IPR available	PANTHER	PTHR33162	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 18..152
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	TatA_B_E	coord: 76..125 e-value: 8.0E-19 score: 66.7
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 75..121 e-value: 5.0E-20 score: 68.8
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 73..156 score: 18.540413

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16487-RA	Carg16487-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051260	protein homooligomerization
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:0032594	protein transport within lipid bilayer
biological_process	GO:0015031	protein transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033281	TAT protein transport complex