Carg16430 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16430
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein SKIP1-like
Location	Carg_Chr12: 7326147 .. 7328192 (-)
RNA-Seq Expression	Carg16430
Synteny	Carg16430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCGTCGTCGGAATCATCATTGGCGTCGCCGGCATGGGCGGAGCTGACGCACGAATGCCTAACCAACGTCTTCTCACGGCTCAGTATGGAGCAGCGGTGGCGCGGCCCGATGTTAGTGTGCAAGCACTGGCTCCATGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGACCTTGAGCCCATGTTCGACTCCGGCCCCACCGAGTCGCCGGCCTGGTGGACGCCCCAGTTCGAGACGAAGATTGATTCCATGCTGCGGTCTGTCGTCCATTGGAGCCTTGGTTCTCTCTCTGTTCTTCGGATCAGACACTGCTCCGATTCATCTCTCGATTGTGTGGCTCAAAGGTAATTTAATTTACTGACCTTCTCATTGTTTCTTCGTGTTTTTATGGATGAGGATGGTTTGTTTTAATTAGGGTAATTAGGGTAATTAGGGTAATTAGGGCAAAGTTATGGTTTTCCCAAATTCTGTACTCCTGTTAAGGTGTTTTTTCCGATTCAGGAAACAGTTGGTGATTAGTCAATGATGCAATATCGCTTGATCTTTGCATATGTTTTCACCGATCATTATGCAGTTTCTTAGAATAAAAGATGTTGGATTTCATATACAAGATGTTGGGCTTTGGGATGCGATTGATGAGTAAAATCCTAATGGGCTACTTGTGTACTGTGATTATCTTAGAGATTACGTATCGGTTGGAGAGGAGAAGGAAGCAATCCTAATAAGAGTGTGGAAATCTCTCCCTAACCGACGCATTTTAAAACCTTGAGAGTGGAAGCCTGAAAGGGGAAGACAATATCGGCTAGTGGTGGGCTTAGGTACAAATGGTATCAAAGCTAGATACTGAGCGGTGTGTTAATGAGGACACTAGGCCTCCAAGGTGGTGGATTGTGAGATCCTATATCAGTTGGAGAGGGGAACGAAACATTTATAGCAACGGTGTTGAAATCTCTCCCTAGAGGGGAACAAAACATTTCTAATAAGGGTGTTGAAACTTCTTCCTAGCAGACGTGTTTTAAAACCTTGAGGGGAAGCCCGAAAGGAAAATTCAAAGAGGACAATATCTACTAGTGTCAGCTTGGGTTGTTACAAATGGTATCAAAGTCAGACACTAGACAGCGTGCCAGCAAGGACGCTGGCCCCCAAGGGGTGGATTGTGAGATCCGATATCGGTTGGAGAGGGAAATGAAACATTCCTAATAAAGCTAGCAGAAGCGTTTTAAAACCTTGAAGGAAAGCCTGAAATGAAAAGTCCAAAAAGGATAATATCTGTTAGCGGTGAACTTGGGCTAGGCTGTACGAACTTTGCATAAGGTAGATATTGTTAATCTTAGTAGTCTTTGAGGCCATAAGTTTGTGGTTGGAACAAATCAAGCAATGAGATAAGCTGAAATGTGTGCAAAAGGGGAAAACGATATAGAATTGGTTGGCTCGAATTAATGGCCTACTACTACTTCACAATTTAGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGTCAAAAGCTTCGGGAAGTCGACATAAGCTACTGTCACGAAATCTCGAACATATCTTTGGCGTTGATTGGCAAGCACTGTTCGAATATCAAGACTCTAAAACGAAACTTTTTTAATAATCTAGATACTTCCCAACATATGGGAACTGTCCCTGACAGTTATCTAAATGCCTGCCCTCAAGAGGTGGATTCAGAAGCTGCGGCTATTGCAAAGTTCATGCCCAACTTAGAGCACCTTGAACTCTGCTTCTCTAAACTATCTGCTAAAGCTCTTAGTTTGATATGTGAAGGATGTCTAAACCTCAAGTACTTGGATCTGTTTGGGTGTATGAACTTGACAAGCCGTGATATAGCAAATGCTACATCAAAATTGGAGAATTTGGAGGTTAGGAAACCGAGTTTCGATATTCCGAGGCCAGTCTTTCACACGGAGAGGTATGGTCATTGGAGGTTGTACGACGAGAGATTCCAAACAGATAGTTTCCGACTTTGA

mRNA sequence

ATGGCAGAGCCGTCGTCGGAATCATCATTGGCGTCGCCGGCATGGGCGGAGCTGACGCACGAATGCCTAACCAACGTCTTCTCACGGCTCAGTATGGAGCAGCGGTGGCGCGGCCCGATGTTAGTGTGCAAGCACTGGCTCCATGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGACCTTGAGCCCATGTTCGACTCCGGCCCCACCGAGTCGCCGGCCTGGTGGACGCCCCAGTTCGAGACGAAGATTGATTCCATGCTGCGGTCTGTCGTCCATTGGAGCCTTGGTTCTCTCTCTGTTCTTCGGATCAGACACTGCTCCGATTCATCTCTCGATTGTGTGGCTCAAAGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGTCAAAAGCTTCGGGAAGTCGACATAAGCTACTGTCACGAAATCTCGAACATATCTTTGGCGTTGATTGGCAAGCACTGTTCGAATATCAAGACTCTAAAACGAAACTTTTTTAATAATCTAGATACTTCCCAACATATGGGAACTGTCCCTGACAGTTATCTAAATGCCTGCCCTCAAGAGGTGGATTCAGAAGCTGCGGCTATTGCAAAGTTCATGCCCAACTTAGAGCACCTTGAACTCTGCTTCTCTAAACTATCTGCTAAAGCTCTTAGTTTGATATGTGAAGGATGTCTAAACCTCAAGTACTTGGATCTGTTTGGGTGTATGAACTTGACAAGCCGTGATATAGCAAATGCTACATCAAAATTGGAGAATTTGGAGGTTAGGAAACCGAGTTTCGATATTCCGAGGCCAGTCTTTCACACGGAGAGGTATGGTCATTGGAGGTTGTACGACGAGAGATTCCAAACAGATAGTTTCCGACTTTGA

Coding sequence (CDS)

ATGGCAGAGCCGTCGTCGGAATCATCATTGGCGTCGCCGGCATGGGCGGAGCTGACGCACGAATGCCTAACCAACGTCTTCTCACGGCTCAGTATGGAGCAGCGGTGGCGCGGCCCGATGTTAGTGTGCAAGCACTGGCTCCATGCCGCCACCGACCCCTCTCTCTTCTCCCACTTCGACCTTGAGCCCATGTTCGACTCCGGCCCCACCGAGTCGCCGGCCTGGTGGACGCCCCAGTTCGAGACGAAGATTGATTCCATGCTGCGGTCTGTCGTCCATTGGAGCCTTGGTTCTCTCTCTGTTCTTCGGATCAGACACTGCTCCGATTCATCTCTCGATTGTGTGGCTCAAAGGTGCCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCCCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGTCAAAAGCTTCGGGAAGTCGACATAAGCTACTGTCACGAAATCTCGAACATATCTTTGGCGTTGATTGGCAAGCACTGTTCGAATATCAAGACTCTAAAACGAAACTTTTTTAATAATCTAGATACTTCCCAACATATGGGAACTGTCCCTGACAGTTATCTAAATGCCTGCCCTCAAGAGGTGGATTCAGAAGCTGCGGCTATTGCAAAGTTCATGCCCAACTTAGAGCACCTTGAACTCTGCTTCTCTAAACTATCTGCTAAAGCTCTTAGTTTGATATGTGAAGGATGTCTAAACCTCAAGTACTTGGATCTGTTTGGGTGTATGAACTTGACAAGCCGTGATATAGCAAATGCTACATCAAAATTGGAGAATTTGGAGGTTAGGAAACCGAGTTTCGATATTCCGAGGCCAGTCTTTCACACGGAGAGGTATGGTCATTGGAGGTTGTACGACGAGAGATTCCAAACAGATAGTTTCCGACTTTGA

Protein sequence

MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCPNLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERFQTDSFRL

Homology

[Close]

BLAST of Carg16430 vs. NCBI nr
Match: XP_022937978.1 (F-box protein SKIP1-like [Cucurbita moschata] >KAG7020826.1 F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 638.3 bits (1645), Expect = 3.5e-179
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD
Sbjct: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. NCBI nr
Match: KAG6586049.1 (F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 637.1 bits (1642), Expect = 7.8e-179
Identity = 306/307 (99.67%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESSLASPAWAELTHECLTNVFSRL+MEQRWRGPMLVCKHWLHAATDPSLFSHFD
Sbjct: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLTMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. NCBI nr
Match: XP_023536859.1 (F-box protein SKIP1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 629.8 bits (1623), Expect = 1.2e-176
Identity = 302/307 (98.37%), Postives = 305/307 (99.35%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESSLASPAWAELTHECLTNVFSRL+MEQRWRGPMLVCKHWLHAATDPSLF+HFD
Sbjct: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLTMEQRWRGPMLVCKHWLHAATDPSLFTHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMF+S PTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFESAPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
            FNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 LFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. NCBI nr
Match: XP_022969584.1 (F-box protein SKIP1-like [Cucurbita maxima])

HSP 1 Score: 623.2 bits (1606), Expect = 1.2e-174
Identity = 299/307 (97.39%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAE SSESSLASPAWAELTHECLTNVFSRL+MEQRWRGPMLVCKHW HAATDP LFSHFD
Sbjct: 1   MAEMSSESSLASPAWAELTHECLTNVFSRLTMEQRWRGPMLVCKHWFHAATDPCLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMFDS PTESPAWWTP+FETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFDSAPTESPAWWTPRFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGC+KLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCRKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGC+NLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCVNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. NCBI nr
Match: XP_038890479.1 (F-box protein SKIP1 [Benincasa hispida])

HSP 1 Score: 543.9 bits (1400), Expect = 9.0e-151
Identity = 262/307 (85.34%), Postives = 281/307 (91.53%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEP SESS    +WAELTHECLTN+ SRL++EQRWRGPMLVCK W  AATDPSLFSHFD
Sbjct: 1   MAEPLSESS----SWAELTHECLTNILSRLTIEQRWRGPMLVCKLWHRAATDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEP F+S PTESPAWW+P+FETKIDSMLRS VHWSLGSLS++RIRHCSDSSLD VAQ CP
Sbjct: 61  LEPRFESTPTESPAWWSPEFETKIDSMLRSAVHWSLGSLSLIRIRHCSDSSLDFVAQGCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSC NVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHC NIKT+KRN
Sbjct: 121 NLEVLSIKSCANVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCPNIKTIKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLD SQH G VPD+YLN+CPQ+VDSEAAAIAKFMPNLEHLEL FSKLSAKALSLICE
Sbjct: 181 FFNNLDPSQHKGIVPDNYLNSCPQDVDSEAAAIAKFMPNLEHLELGFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GC  LK+LDLFGC+NLTSRDIANATS +ENLE+RKP+F IPR VFHTERYGHWRLYDERF
Sbjct: 241 GCPKLKFLDLFGCVNLTSRDIANATSSMENLEIRKPNFYIPRSVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTD FR+
Sbjct: 301 QTDIFRI 303

[Close]

BLAST of Carg16430 vs. ExPASy Swiss-Prot
Match: Q9FDX1 (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 7.5e-92
Identity = 168/296 (56.76%), Postives = 216/296 (72.97%), Query Frame = 0


Query: 15  WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTESPA 74
           W  L  E L N+ SRL++++ W GPM V K WL    DP L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 75  WWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCPNLEVLSIKSCPNVT 134
            W+P+FE K+D MLRSVV WS G L+ +R+RHCSD +L   A RCPNL+VL+I+S PNVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 135 DRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHMGTV 194
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++C N++ LKRN  +   +S+H+G+V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMD--WSSRHIGSV 187

Query: 195 PDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLFGCM 254
           P  YL+ACPQ+ D+EA AI K M NLEHLE+ FS+LS K L+ ICEGC  L+YLDLFGC+
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 255 NLTSRDIANATSKLENL-EVRKPSFDIPR--PVFHTERYGHWRLYDERFQTDSFRL 308
           +L+SRDI +  S+L+ L EV+KP   +PR   V  TERYGHWRLYDERF   + R+
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg16430 vs. ExPASy Swiss-Prot
Match: Q9M096 (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.6e-76
Identity = 149/283 (52.65%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 13  PAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTES 72
           P W+ELT ECL ++FSRLS EQRW GPMLV K+W++A  DP+L + FDLE  F S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 73  PAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCPNLEVLSIKSCPN 132
             WWTP+FE K+DS LRSVV  S G L+ +RIRHC++ SL   A+RCPNLEVL IK+CPN
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 133 VTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHMG 192
           VTD SM KIA+ C  LRE+DISY + I++ SL  +G+ C N+K LKRN    L  S    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 193 TVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLFG 252
             P  YL   P+  + EA  I K+M  L+HLE+ +S L+A+ L  +C+GC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 253 CMNLTSRDIANATSKLENL-EVRKPSFDIPRPVFHTERYGHWR 295
           C++LT  DI   TS L+NL E+ KP F+ P  V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg16430 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-21
Identity = 81/266 (30.45%), Postives = 120/266 (45.11%), Query Frame = 0


Query: 1   MAEPSSESSLASPA---------WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAAT 60
           +A  SS SS   P+         WAEL  +  +++  RL   +  +    VCK W     
Sbjct: 158 IASSSSLSSTPLPSLMKDKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCK 217

Query: 61  DPSLFSHFDLEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSS 120
           DPS++   D++   D             F+  ++SM R  V  S G L  + I +   + 
Sbjct: 218 DPSMWRKIDIDNRNDRA----------AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTND 277

Query: 121 LDC-VAQRCPNLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKH 180
           L   +A R  NL+ L +  C  +TD  +AK       L  +++SYC   S  SL  IG+ 
Sbjct: 278 LIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYC-LFSGESLRDIGRS 337

Query: 181 CSNIKTLKRNFFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKL 240
           C N+KTLK N    +  S                  D  A AIA+ MP L HL+L  + L
Sbjct: 338 CPNLKTLKLNRAPEIMFSN--------------SGFDDNAKAIAESMPELRHLQLLGNGL 397

Query: 241 SAKALSLICEGCLNLKYLDLFGCMNL 257
           + K L+ I +GC +L++LDL  C N+
Sbjct: 398 TNKGLNAILDGCPHLEHLDLRQCFNI 398

[Close]

BLAST of Carg16430 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-20
Identity = 76/247 (30.77%), Postives = 111/247 (44.94%), Query Frame = 0


Query: 12  SPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTE 71
           S  W EL  E  + +  RL   +       VC+ W     DPS++   D+  + D     
Sbjct: 16  STNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD----- 75

Query: 72  SPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSD-SSLDCVAQRCPNLEVLSIKSC 131
                    +  ++ M R  V  S G L  + I +      L+ +A R  NL  L +  C
Sbjct: 76  -----LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRC 135

Query: 132 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQH 191
             +TD    + A+    L E+++SYC   S  SL ++G+ C N+KTLK            
Sbjct: 136 SQITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK------------ 195

Query: 192 MGTVPDSYLNACPQ-EVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLD 251
                   LN  PQ E D +A AIA+ MP L HL+LC + LS   L+ I + C NL++LD
Sbjct: 196 --------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLD 230

Query: 252 LFGCMNL 257
           L  C N+
Sbjct: 256 LRRCFNV 230

[Close]

BLAST of Carg16430 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-19
Identity = 73/246 (29.67%), Postives = 112/246 (45.53%), Query Frame = 0


Query: 15  WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDL---EPMFDSGPTE 74
           WAEL  E  +++  RL   +  +    VCK W     DPS++   D+   E + +S    
Sbjct: 21  WAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNS---- 80

Query: 75  SPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSS-LDCVAQRCPNLEVLSIKSC 134
                  +    I+ +    V  S G L  + I +  ++S L+ +A R  NL  L +  C
Sbjct: 81  ------VELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDC 140

Query: 135 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQH 194
             V  R + + A+    L E+DI+Y   I    L ++G+ C N++TLK N   +      
Sbjct: 141 APVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGD------ 200

Query: 195 MGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDL 254
                   +  C    D  A AIA+ MP L HL+L  + LS   L+ I EGC +LK L L
Sbjct: 201 --------VKCC----DKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGL 238

Query: 255 FGCMNL 257
             C+N+
Sbjct: 261 HQCLNI 238

[Close]

BLAST of Carg16430 vs. ExPASy TrEMBL
Match: A0A6J1FHJ2 (F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111444201 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 1.7e-179
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD
Sbjct: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. ExPASy TrEMBL
Match: A0A6J1I319 (F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111468563 PE=4 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 5.6e-175
Identity = 299/307 (97.39%), Postives = 303/307 (98.70%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAE SSESSLASPAWAELTHECLTNVFSRL+MEQRWRGPMLVCKHW HAATDP LFSHFD
Sbjct: 1   MAEMSSESSLASPAWAELTHECLTNVFSRLTMEQRWRGPMLVCKHWFHAATDPCLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEPMFDS PTESPAWWTP+FETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP
Sbjct: 61  LEPMFDSAPTESPAWWTPRFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSCPNVTDRSMAKIALGC+KLREVDISYCHEISNISLALIGKHCSNIKTLKRN
Sbjct: 121 NLEVLSIKSCPNVTDRSMAKIALGCRKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE
Sbjct: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GCLNLKYLDLFGC+NLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF
Sbjct: 241 GCLNLKYLDLFGCVNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTDSFRL
Sbjct: 301 QTDSFRL 307

[Close]

BLAST of Carg16430 vs. ExPASy TrEMBL
Match: A0A5A7UJH9 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G00770 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.4e-149
Identity = 259/307 (84.36%), Postives = 277/307 (90.23%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESS    +WAELTHECLTN+ SRL++EQRWRGPMLVCKHW HAA DPSLFSHFD
Sbjct: 1   MAEPSSESS----SWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFHAARDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEP F+S PTESPAWW P+FETKIDSMLRS V WSLGSLSV+R+RHCSDSSLD VAQ CP
Sbjct: 61  LEPRFESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSC NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HC NIKTLKRN
Sbjct: 121 NLEVLSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           +FNNLD SQH G VPD+YL+ACPQ+VDSEAAAIAKFM NLEHLEL FSKLSAKAL+ ICE
Sbjct: 181 YFNNLDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GC NLKYLDLFGC+NLTSRDIANATS LENLE+RKP+F IPR VFHTERY HWRLYDERF
Sbjct: 241 GCPNLKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTD FR+
Sbjct: 301 QTDIFRI 303

[Close]

BLAST of Carg16430 vs. ExPASy TrEMBL
Match: A0A5D3BD72 (F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00320 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.2e-148
Identity = 258/307 (84.04%), Postives = 276/307 (89.90%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESS    +WAELTHECLTN+ SRL++EQRWRGPMLVCKHW  AA DPSLFSHFD
Sbjct: 1   MAEPSSESS----SWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEP F+S PTESPAWW P+FETKIDSMLRS V WSLGSLSV+R+RHCSDSSLD VAQ CP
Sbjct: 61  LEPRFESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSC NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HC NIKTLKRN
Sbjct: 121 NLEVLSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           +FNNLD SQH G VPD+YL+ACPQ+VDSEAAAIAKFM NLEHLEL FSKLSAKAL+ ICE
Sbjct: 181 YFNNLDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GC NLKYLDLFGC+NLTSRDIANATS LENLE+RKP+F IPR VFHTERY HWRLYDERF
Sbjct: 241 GCPNLKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTD FR+
Sbjct: 301 QTDIFRI 303

[Close]

BLAST of Carg16430 vs. ExPASy TrEMBL
Match: A0A1S3BUE6 (F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.2e-148
Identity = 258/307 (84.04%), Postives = 276/307 (89.90%), Query Frame = 0


Query: 1   MAEPSSESSLASPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFD 60
           MAEPSSESS    +WAELTHECLTN+ SRL++EQRWRGPMLVCKHW  AA DPSLFSHFD
Sbjct: 1   MAEPSSESS----SWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFD 60

Query: 61  LEPMFDSGPTESPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCP 120
           LEP F+S PTESPAWW P+FETKIDSMLRS V WSLGSLSV+R+RHCSDSSLD VAQ CP
Sbjct: 61  LEPRFESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCP 120

Query: 121 NLEVLSIKSCPNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRN 180
           NLEVLSIKSC NVTD SMAKIA GCQKLREVDISYCHEISNISLALIG+HC NIKTLKRN
Sbjct: 121 NLEVLSIKSCANVTDSSMAKIAFGCQKLREVDISYCHEISNISLALIGRHCPNIKTLKRN 180

Query: 181 FFNNLDTSQHMGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICE 240
           +FNNLD SQH G VPD+YL+ACPQ+VDSEAAAIAKFM NLEHLEL FSKLSAKAL+ ICE
Sbjct: 181 YFNNLDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICE 240

Query: 241 GCLNLKYLDLFGCMNLTSRDIANATSKLENLEVRKPSFDIPRPVFHTERYGHWRLYDERF 300
           GC NLKYLDLFGC+NLTSRDIANATS LENLE+RKP+F IPR VFHTERY HWRLYDERF
Sbjct: 241 GCPNLKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERF 300

Query: 301 QTDSFRL 308
           QTD FR+
Sbjct: 301 QTDIFRI 303

[Close]

BLAST of Carg16430 vs. TAIR 10
Match: AT5G57900.1 (SKP1 interacting partner 1 )

HSP 1 Score: 338.6 bits (867), Expect = 5.3e-93
Identity = 168/296 (56.76%), Postives = 216/296 (72.97%), Query Frame = 0


Query: 15  WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTESPA 74
           W  L  E L N+ SRL++++ W GPM V K WL    DP L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 75  WWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCPNLEVLSIKSCPNVT 134
            W+P+FE K+D MLRSVV WS G L+ +R+RHCSD +L   A RCPNL+VL+I+S PNVT
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 135 DRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHMGTV 194
           D SM KIA  C+ L+E+DISYCHEIS+ +L +IG++C N++ LKRN  +   +S+H+G+V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMD--WSSRHIGSV 187

Query: 195 PDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLFGCM 254
           P  YL+ACPQ+ D+EA AI K M NLEHLE+ FS+LS K L+ ICEGC  L+YLDLFGC+
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 255 NLTSRDIANATSKLENL-EVRKPSFDIPR--PVFHTERYGHWRLYDERFQTDSFRL 308
           +L+SRDI +  S+L+ L EV+KP   +PR   V  TERYGHWRLYDERF   + R+
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg16430 vs. TAIR 10
Match: AT4G30640.1 (RNI-like superfamily protein )

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-77
Identity = 149/283 (52.65%), Postives = 191/283 (67.49%), Query Frame = 0


Query: 13  PAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTES 72
           P W+ELT ECL ++FSRLS EQRW GPMLV K+W++A  DP+L + FDLE  F S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 73  PAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSSLDCVAQRCPNLEVLSIKSCPN 132
             WWTP+FE K+DS LRSVV  S G L+ +RIRHC++ SL   A+RCPNLEVL IK+CPN
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 133 VTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHMG 192
           VTD SM KIA+ C  LRE+DISY + I++ SL  +G+ C N+K LKRN    L  S    
Sbjct: 138 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 197

Query: 193 TVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLFG 252
             P  YL   P+  + EA  I K+M  L+HLE+ +S L+A+ L  +C+GC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 253 CMNLTSRDIANATSKLENL-EVRKPSFDIPRPVFHTERYGHWR 295
           C++LT  DI   TS L+NL E+ KP F+ P  V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg16430 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-21
Identity = 76/247 (30.77%), Postives = 111/247 (44.94%), Query Frame = 0


Query: 12  SPAWAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTE 71
           S  W EL  E  + +  RL   +       VC+ W     DPS++   D+  + D     
Sbjct: 16  STNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD----- 75

Query: 72  SPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSD-SSLDCVAQRCPNLEVLSIKSC 131
                    +  ++ M R  V  S G L  + I +      L+ +A R  NL  L +  C
Sbjct: 76  -----LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRC 135

Query: 132 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQH 191
             +TD    + A+    L E+++SYC   S  SL ++G+ C N+KTLK            
Sbjct: 136 SQITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK------------ 195

Query: 192 MGTVPDSYLNACPQ-EVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLD 251
                   LN  PQ E D +A AIA+ MP L HL+LC + LS   L+ I + C NL++LD
Sbjct: 196 --------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLD 230

Query: 252 LFGCMNL 257
           L  C N+
Sbjct: 256 LRRCFNV 230

[Close]

BLAST of Carg16430 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-20
Identity = 73/246 (29.67%), Postives = 112/246 (45.53%), Query Frame = 0


Query: 15  WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDL---EPMFDSGPTE 74
           WAEL  E  +++  RL   +  +    VCK W     DPS++   D+   E + +S    
Sbjct: 21  WAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNS---- 80

Query: 75  SPAWWTPQFETKIDSMLRSVVHWSLGSLSVLRIRHCSDSS-LDCVAQRCPNLEVLSIKSC 134
                  +    I+ +    V  S G L  + I +  ++S L+ +A R  NL  L +  C
Sbjct: 81  ------VELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDC 140

Query: 135 PNVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQH 194
             V  R + + A+    L E+DI+Y   I    L ++G+ C N++TLK N   +      
Sbjct: 141 APVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGD------ 200

Query: 195 MGTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDL 254
                   +  C    D  A AIA+ MP L HL+L  + LS   L+ I EGC +LK L L
Sbjct: 201 --------VKCC----DKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGL 238

Query: 255 FGCMNL 257
             C+N+
Sbjct: 261 HQCLNI 238

[Close]

BLAST of Carg16430 vs. TAIR 10
Match: AT4G08980.1 (F-BOX WITH WD-40 2 )

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-19
Identity = 68/245 (27.76%), Postives = 114/245 (46.53%), Query Frame = 0


Query: 15  WAELTHECLTNVFSRLSMEQRWRGPMLVCKHWLHAATDPSLFSHFDLEPMFDSGPTESPA 74
           W EL  + L  +FS L +++       VCK W  A T P  +   D+E            
Sbjct: 10  WDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIE------------ 69

Query: 75  WWTPQFETK--IDSMLRSVVHWSLGSLSVLRIRHC-SDSSLDCVAQRCPNLEVLSIKSCP 134
            W+ +F     +D ML  ++  S GSL  L +    +DS    +AQ   +L+ L +    
Sbjct: 70  LWSNRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPR-S 129

Query: 135 NVTDRSMAKIALGCQKLREVDISYCHEISNISLALIGKHCSNIKTLKRNFFNNLDTSQHM 194
            +T+  +  +A     L  +D+SYC +I   ++  IGKHC +++   RN  + LD +  +
Sbjct: 130 GLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRN-MHPLDVASVV 189

Query: 195 GTVPDSYLNACPQEVDSEAAAIAKFMPNLEHLELCFSKLSAKALSLICEGCLNLKYLDLF 254
                          D EA AIA  MP L+ LE+ + ++S + +  I   C+ L++L+L 
Sbjct: 190 SH-------------DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELR 227

Query: 255 GCMNL 257
           GC ++
Sbjct: 250 GCWDV 227

The following BLAST results are available for this feature:

BLAST of Carg16430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937978.1	3.5e-179	100.00	F-box protein SKIP1-like [Cucurbita moschata] >KAG7020826.1 F-box protein SKIP1,...	[more]
KAG6586049.1	7.8e-179	99.67	F-box protein SKIP1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023536859.1	1.2e-176	98.37	F-box protein SKIP1 [Cucurbita pepo subsp. pepo]	[more]
XP_022969584.1	1.2e-174	97.39	F-box protein SKIP1-like [Cucurbita maxima]	[more]
XP_038890479.1	9.0e-151	85.34	F-box protein SKIP1 [Benincasa hispida]	[more]

BLAST of Carg16430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX1	7.5e-92	56.76	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
Q9M096	2.6e-76	52.65	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
Q9S9V9	6.9e-21	30.45	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9M0U9	5.9e-20	30.77	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
Q9S9V8	2.2e-19	29.67	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]

BLAST of Carg16430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHJ2	1.7e-179	100.00	F-box protein SKIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111444201 PE=4 SV=1	[more]
A0A6J1I319	5.6e-175	97.39	F-box protein SKIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111468563 PE=4 SV=1	[more]
A0A5A7UJH9	1.4e-149	84.36	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G...	[more]
A0A5D3BD72	1.2e-148	84.04	F-box protein SKIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G...	[more]
A0A1S3BUE6	1.2e-148	84.04	F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1	[more]

BLAST of Carg16430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57900.1	5.3e-93	56.76	SKP1 interacting partner 1	[more]
AT4G30640.1	1.8e-77	52.65	RNI-like superfamily protein	[more]
AT4G05460.1	4.2e-21	30.77	RNI-like superfamily protein	[more]
AT4G05497.1	1.6e-20	29.67	RNI-like superfamily protein	[more]
AT4G08980.1	3.0e-19	27.76	F-BOX WITH WD-40 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 254..274
None	No IPR available	GENE3D	1.20.1280.50		coord: 14..55 e-value: 1.5E-9 score: 39.5
None	No IPR available	PANTHER	PTHR16134:SF29	F-BOX PROTEIN SKIP1	coord: 14..306
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 14..306
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 94..272
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 242..267 e-value: 5.3 score: 16.0 coord: 119..144 e-value: 3.1E-5 score: 33.4 coord: 96..118 e-value: 590.0 score: 0.7 coord: 145..170 e-value: 0.0038 score: 26.5 coord: 217..241 e-value: 330.0 score: 2.7
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 82..282 e-value: 1.3E-32 score: 114.8
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 145..161 e-value: 1.3 score: 9.3
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 15..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16430-RA	Carg16430-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding