Carg16418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16418
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nuclear pore complex protein NUP43
Location	Carg_Chr12: 7227263 .. 7229049 (+)
RNA-Seq Expression	Carg16418
Synteny	Carg16418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGTAAGCTCTGTTGCCTTAGCTTCTTATCCTTACATCACACCTAAGTAGTCATAGTCACGTGTGTTTGTATAAACTCTGCAGAAGATCAGGACTCCGAACTTGTGTTTCCTTTCCAAACTTCTTCTCTTTTTTTTTTGTCCTAAAACTTTTTTAGAGATATCATGATTGGGTCGCCCAGGCCAGATCTAGAGTCTAATCATGAGGGTAATATTTTATCATGGTGGAGTTTTCTTGCTCTCGCTATCGTTCGCCTTGGAGACATGGTCGAGAAGTACCATGCATGGTTGCTTCTGACTCCCTATGAGCCGTTTGACGACCTGAGTTTCTGTACTTTCTACCATTCAGTTTTGTTTATAGTGCTAAACACGCCTCTTAAGTCTTCTCAACCTAACTCTTTTGGTAGATTACTTGGGCAGATCTTATTGAGCTAATTATTTGTCATCTCTTGTGTAAGTTCAGGTCGATAGTGAAATTGATTTCCAGCCTCAGAATCATCACATTATAGAAATTTTTAATGGTTCTCTTTTCTTGTTTAGGTTCATACCACTTCATGTTTTTCCATCTTTCTTATCCTGCCTTATTTATGAGCTTCAGTATAAGTGTGCTTATTATTCCCCATGTTAGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGTAGAAACTGGTGCTGACCATGTTTGATTGGTCGGGGTGAACCATCGTTTATCCAAAGTCTTTTTGTTGCTACATATCTAATATATAAGTAGTTTCCTTTTTCATTCTGTTATCTAATGCCTGTTGGCTATTGTCTTATTTTCTGTTCCACATCCATAAAGTGGCTCAACTTTTCTATTTATGTGACTTGTAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGTAAGTTGCCCATATAACTATTATATGAAACTTATGTTGTTTACTTTATTCATTGTGTTGTCCCATATAACTATTATTTGAAAATAAATGGTGAGAGGGTTTAAGTGGTGGTGCTCGCTATGTTTAAGGCTCTCTAAATATGCTATGCAGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTTAGTTACACCACGTAATTTGAACTGAATTTTGATATGGATTATCATATTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTGTTTTTAATGTATTTCTTCTTTTTTTCATTCTACTTCTCGACGTGACGTTTTTACTTTTTAATTTTTATACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGCTTTATTGGAAATTTTTAATTGGCATTAT

mRNA sequence

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTTAGTTACACCACGTAATTTGAACTGAATTTTGATATGGATTATCATATTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTGTTTTTAATGTATTTCTTCTTTTTTTCATTCTACTTCTCGACGTGACGTTTTTACTTTTTAATTTTTATACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGCTTTATTGGAAATTTTTAATTGGCATTAT

Coding sequence (CDS)

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGA

Protein sequence

ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

Homology

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_022937892.1 (nuclear pore complex protein NUP43 [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: KAG7020814.1 (Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 121 HPSEVICNLEWESVAILSRP 140

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: KAG6586038.1 (Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.2 bits (770), Expect = 4.6e-78
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGT FAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTFFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_023538014.1 (nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 2.3e-77
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
            PSEVICNLEWESVAILSRP
Sbjct: 331 RPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_022969681.1 (nuclear pore complex protein NUP43 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 8.7e-77
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EV YDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDID Q
Sbjct: 271 EVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. ExPASy Swiss-Prot
Match: Q24JJ9 (Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.8e-54
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWE
Sbjct: 227 SAIVHSIDIHPSRKHTCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWE 286

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YD Y KS     +SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+
Sbjct: 287 VQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQN 346

Query: 122 PSEVICNLEWESVAILSRP 141
           P +VIC+LEWES+A+ SRP
Sbjct: 347 PQDVICSLEWESIAVFSRP 361

[Close]

BLAST of Carg16418 vs. ExPASy TrEMBL
Match: A0A6J1FCG9 (nuclear pore complex protein NUP43 OS=Cucurbita moschata OX=3662 GN=LOC111444145 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 5.9e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. ExPASy TrEMBL
Match: A0A6J1HYH3 (nuclear pore complex protein NUP43 OS=Cucurbita maxima OX=3661 GN=LOC111468634 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.2e-77
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EV YDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDID Q
Sbjct: 271 EVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. ExPASy TrEMBL
Match: A0A6J1DUZ0 (nuclear pore complex protein NUP43 OS=Momordica charantia OX=3673 GN=LOC111024694 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.3e-75
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLE SK SN SPCESEVW
Sbjct: 212 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLERSKASNLSPCESEVW 271

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKS NIGGMSSSQILPAMICSEDGI+TS+EQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 272 EVHYDPYIKSCNIGGMSSSQILPAMICSEDGILTSVEQGKQPVELLAEPCAINGFDIDRQ 331

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 332 HPSEVICNLEWESVAILSRP 351

[Close]

BLAST of Carg16418 vs. ExPASy TrEMBL
Match: A0A0A0LJ46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.0e-74
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK+PVELLAEPCAINGFDI+RQ
Sbjct: 271 EVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. ExPASy TrEMBL
Match: A0A5D3BAS9 (Nuclear pore complex protein NUP43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00190 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 7.4e-74
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEG+KTSN SPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGTKTSNPSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK+PVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSR 140
           HPSEVICNLEWESVAILSR
Sbjct: 331 HPSEVICNLEWESVAILSR 349

[Close]

BLAST of Carg16418 vs. TAIR 10
Match: AT4G30840.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.4e-55
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWE
Sbjct: 227 SAIVHSIDIHPSRKHTCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWE 286

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YD Y KS     +SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+
Sbjct: 287 VQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQN 346

Query: 122 PSEVICNLEWESVAILSRP 141
           P +VIC+LEWES+A+ SRP
Sbjct: 347 PQDVICSLEWESIAVFSRP 361

The following BLAST results are available for this feature:

BLAST of Carg16418 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937892.1	1.2e-78	100.00	nuclear pore complex protein NUP43 [Cucurbita moschata]	[more]
KAG7020814.1	1.2e-78	100.00	Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6586038.1	4.6e-78	99.29	Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023538014.1	2.3e-77	98.57	nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]	[more]
XP_022969681.1	8.7e-77	97.86	nuclear pore complex protein NUP43 [Cucurbita maxima]	[more]

BLAST of Carg16418 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q24JJ9	4.8e-54	69.78	Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1...	[more]

BLAST of Carg16418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCG9	5.9e-79	100.00	nuclear pore complex protein NUP43 OS=Cucurbita moschata OX=3662 GN=LOC111444145...	[more]
A0A6J1HYH3	4.2e-77	97.86	nuclear pore complex protein NUP43 OS=Cucurbita maxima OX=3661 GN=LOC111468634 P...	[more]
A0A6J1DUZ0	2.3e-75	95.71	nuclear pore complex protein NUP43 OS=Momordica charantia OX=3673 GN=LOC11102469...	[more]
A0A0A0LJ46	2.0e-74	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1	[more]
A0A5D3BAS9	7.4e-74	94.96	Nuclear pore complex protein NUP43 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Carg16418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30840.1	3.4e-55	69.78	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..139 e-value: 1.4E-8 score: 36.4
None	No IPR available	PANTHER	PTHR22652	NUCLEOPORIN NUP43	coord: 2..139
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 3..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16418-RA	Carg16418-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031080	nuclear pore outer ring
molecular_function	GO:0005515	protein binding