Carg16393 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16393
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3598382 .. 3599290 (-)
RNA-Seq ExpressionCarg16393
SyntenyCarg16393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCATCTGATGGTAATTGCTGTTTGACTTCCCAGAAATATTTTGACTTGGGAGCTGGGAGTTCAATTTGTGGTATTCAGAGTCAAAAGGTCAATCACATGTTTGCAACCTTGTACATAACCAATGAACTACAAACCAAAAGGTTAGTCTTACTTTCATAATCTATCCATTTATACATTGTAAGAATGTTGTGAATGTGAAAAGGGTGGGTTCAGTTCAATTCAATTCAATTCAATATGGCATCAATGCAACAACGGCAAAAATGAGCCATATTATTTGTCTTTAAAGCGGCAGCAGCCTGCGATTGGGTTTTCCTTATATGCTTAATTTATTGCGCCACTTTGAAAGAGAAGGCAATGGCGGGTCACTAATTCACATGGTTTTTCCTGTTATTAAATTGAAAGGACGTTTTGTGGATGGGAAAATTAATGAAAGTCAACTATTTGGGAGGGAAATTTTTTAGGGGCAACTTGGAATATGATAAAAGGATTGACAATTACAATGATGCCTTGATAGTCTTTGAATTCATCAAACTTCATAATTAAAAGTAATGAAAAGCATGGAAAACTGGACACATGGTATGCCATTGATAGCCTTTGAATTCATCAAACTTCATAATTAGTATCAAATCCGACGGCCACTACATTACTAAAGGAAATTTTTGTCCATTAGTTGTAATGTTCCACTCAATTTTTTCAAGTTCAAACTTGATATTTATGTGATGTGCTACACATTTGTAGTAAAATGAATTCTATTTCTTCCCTAATTTTCTAGTTTATTTGGGTTTTGGCCGACAGATTGTAAACATCGATGGAGGACGCAATAGAGGCGACATAAAGTCTAGGAGACAATCGAGTCCAGGTGATGTTATTTTGAACCTGAGGCTCTTGTTTTTTTTTGGCTAA

mRNA sequence

ATGGTTCCATCTGATGGTAATTGCTGTTTGACTTCCCAGAAATATTTTGACTTGGGAGCTGGGAGTTCAATTTGTGGTATTCAGAGTCAAAAGGTCAATCACATGTTTGCAACCTTGTACATAACCAATGAACTACAAACCAAAAGTATCAAATCCGACGGCCACTACATTACTAAAGGAAATTTTTTTTATTTGGGTTTTGGCCGACAGATTGTAAACATCGATGGAGGACGCAATAGAGGCGACATAAAGTCTAGGAGACAATCGAGTCCAGGTGATGTTATTTTGAACCTGAGGCTCTTGTTTTTTTTTGGCTAA

Coding sequence (CDS)

ATGGTTCCATCTGATGGTAATTGCTGTTTGACTTCCCAGAAATATTTTGACTTGGGAGCTGGGAGTTCAATTTGTGGTATTCAGAGTCAAAAGGTCAATCACATGTTTGCAACCTTGTACATAACCAATGAACTACAAACCAAAAGTATCAAATCCGACGGCCACTACATTACTAAAGGAAATTTTTTTTATTTGGGTTTTGGCCGACAGATTGTAAACATCGATGGAGGACGCAATAGAGGCGACATAAAGTCTAGGAGACAATCGAGTCCAGGTGATGTTATTTTGAACCTGAGGCTCTTGTTTTTTTTTGGCTAA

Protein sequence

MVPSDGNCCLTSQKYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKSIKSDGHYITKGNFFYLGFGRQIVNIDGGRNRGDIKSRRQSSPGDVILNLRLLFFFG
Homology
[Close]
BLAST of Carg16393 vs. NCBI nr
Match: KAG7020607.1 (hypothetical protein SDJN02_17293, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 7.8e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MVPSDGNCCLTSQKYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKSIKSDGHYITKG 60
           MVPSDGNCCLTSQKYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKSIKSDGHYITKG
Sbjct: 1   MVPSDGNCCLTSQKYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKSIKSDGHYITKG 60

Query: 61  NFFYLGFGRQIVNIDGGRNRGDIKSRRQSSPGDVILNLRLLFFFG 106
           NFFYLGFGRQIVNIDGGRNRGDIKSRRQSSPGDVILNLRLLFFFG
Sbjct: 61  NFFYLGFGRQIVNIDGGRNRGDIKSRRQSSPGDVILNLRLLFFFG 105

[Close]
BLAST of Carg16393 vs. NCBI nr
Match: KAG6585705.1 (F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 14  KYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKSI 51
           KYFDLGAGSSICGIQSQKVNHMFATLYITNELQTK +
Sbjct: 318 KYFDLGAGSSICGIQSQKVNHMFATLYITNELQTKRL 354

The following BLAST results are available for this feature:
BLAST of Carg16393 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020607.17.8e-54100.00hypothetical protein SDJN02_17293, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585705.12.4e-1094.59F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg16393 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16393 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16393 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16393-RACarg16393-RAmRNA