Carg16351 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16351
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 6085435 .. 6088805 (-)
RNA-Seq ExpressionCarg16351
SyntenyCarg16351
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGATTCACGTTCTTCTTCGATGTGATTTATGTGGATTATCAGAGATTTGAACTTCTATGTGGTGGCCGGGAACTGGCTGAGCTACTCACAAAAGATTCATAACTGCTTCTTTTCTGATTTATTATTAATTTTTTGTAGGTTAAAATAGTTGACCATTTTGATTGTAATGTCCATGAGTTGGTTTATTTAATATATATTTTTCTTTCTTTTCTTTGTTCTTTGTTTTAATGTATGTAGGAATCTCTTTATCAATTCAGTATCTGTTTGGGTTTACAGGGATGTTAGGCTTTTTTGTTTTTTTGGAGTTGCTATCATGAGGAAAAGGTGTTTTGAAAGTTTACAATTTCGATTTTATGTTTAGCCATTTGGGTGAAAAGGAATAAGAAGATTTTCAGGAACATGTTAGAATTTTCAAAATGTTTTGGATTGAATTCTAAACACATAAAGCCTTTTTTTCTTTGAGATTTTAGTATTATCCCATGATCTCGATTGCTTTTGTCGTTGTAATTACCTTGTTCAATATGTTTACACGGATTTTATGAATATAACGTTGAATTTGCGTTAGTATAAATGTAGAGTCGAATTGTTTGGTTCTTTTATGTTCAGATTTTGCTTTCTGTCACTCTTTTCATCATGATTCATGTCGTGAATGACTCGTTCTTGGCATTGATCTTAGTGTATTATTAATGTCTGAGGTCAAATTGGAAGACTCTTAGAAATATTGTAATAAAAATTGTGGGAAGATTTGGTGTTGCATATAGAACTTAGTTCTCACCATCCCTGGATTAGGATCTTGTTGCTTGCAGCACCCTGAGCTCGTGGTATATACACCTTTTGAAGTATCTTTATGTCCTCTGTCTTTGGCTGTAAAAATAATGCAACAATCTCTACACTGTTGGACATTTGTTATACTTGTATTGAAATATGTGATAATATGTTATAAATTTGCGTTATAATTCATGCTTTCAAGCACTGCAGAGGGTATCCATCAGCTCGTGTTATCCTCATGGGTCATTGTTTGGAATCCAAACACAAAAAAGACATGAAGGCATTAAAGGTTGTTTTGCAATATCAATAAAAAATTACAATATCAGCAGCCTTCTCCCTCTCCTAAAGTGTGAGATTCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGTTTCAAAAACCTTGAGGGGAATCCCGAAAGAGAAAGTCTAAAGAGGAAAATATCTACTGGCAATGGGTTTGGGCCATTACAAATCGTATCAGAGCTAGACACCGAGCGATGTGCCCGCGAAGAGGCTAAGCCCCGAAGGGGGTGGACACGAGGCGATGTGCCAACAAGAACGCTGGGCCTCGAAGGGGGGTGGATTGTGAGATCTCACATCTATTGGGAAGGAGAACAAAACATTCTTTATAAAAGTGTGGAAATCTTTCCCTAGCAAACACGTTTCAAAAACCAAACCTTGAGAGGAAGCCCAAAGAGGACAATATCGGCTAGCGGTGAGCTTGACCCATTACACAAAGTCCCACAATGGACAATCCTCACCAAAATGATCCTCCTCTTAAGGTGCCCCAACTCCCCTTATTTATTCATAACGAATACACCACTATTTAATTATCACTATGTCCTTACTACTATTCTACTAACATTCTCCTGGTGGCGAGGGCTTAGGATGCTTAGACGTACTTTCCAGGGTCCTATTCTAAAGATCCTAAAGTTATATAATCTTATAATTTAAAACTCTTGCTGTCTTTTAGAATTGGTCTTAGTGTATACAAAGCCTCGCCATGGATTAGCGGAGAGTGTGCTATGAGCAGGGTGCCCTTTTCAGTTTTCAGAAAAGAAAACAAAGGGAAAATGTACTGTAGCTTTTGTTGATGTAACAGGTAAAAAATTGTTTCAGTTTAGCTTAGTATTTGATGTTCTTGTATTGTTTTTAGTAAAATTTAGATGTAATCTTGTTAATTTTAACGAAATTATGTCTTATTTACTTGATAAGCATCGCGCGCCCACCTAATCTTAGTATTTGATGTCCTCGTATTGGTTTTATTAGTTTCATAATACTAATAAAACTAGGTTGGGTGTAGGGGGTCGATCTTTATTTTCTTACTCAGGTAAGTCCACCGCTAGTAGATATTGACCTCTATAGGCTTTCCTTTTCGGGCTTCTCCTCAAAGTTTTTAAAACGAGTATGCTAGGGAGAGGTTCCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAACTAATGTGGGATTTCACAATTTTATAAGGGTGTGAAAACCTCTCCCTAGCATACTCGTTTTAAAAGCGGAAAAACCCATAGAAGATGATATCGGCTAGCGGTGGACTTGATTGTTACAACCTAGGTCAGGTCATCTATCTTTTTTGCCTTCGTGATGCTGGTTTGGATGGTGTTTGTTTGGGGACCTTAGTGCAACTTTGTTAAGGGCCGATATTTTTGACTTTATCAAAAGAGTGCAATCAAGCACTAAATTGGACTCCTCGGTTGATGTCTTTCGAGAAGTCCTAGGTTATCAAAAGAGTGCAATCAAGCACATGTTATTATGTCATTAAAAAATTTCTAATTACCGAGGAAGAATCAGAAGAACAATACAGATCACAGGGATCTGAATTCCACTCCACTGCTGTACGGGTCAGTTTTGGATTTCATACTGTCAACCATTTCAATACTAGTATGATATATAGGACATAGAAAATTCTTGGAATTTTTATTTCAAAAATTTTAGACTAATAGGTGCTGTGAGATTCGGGGCGTGGATTGTGAGATCCGAGATCCCACGTCGTTTTAAAAACTTTGAAGGAAAACTCGAAAGACAAAGTCCAAAGAGGACTATATCTGCTAGCAGTGAGCTTAACCTGTTATTATTGGTACTCTTTTCACACTCTAATGGTTTGATTTGTTGGTTGGTTTCAGGATCCATACTTAAAAACAATGTCTTCTTTGGAAATTTATGAAGAATCCAATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGACAATGTCCAAACAGGATGTCTCATATAAGCATATACAGACTTAAGAAACTCAGTACTTAGTTTACCTCGACTCCTTTATATTTATGTCCTGAACACTGGCCGTAATGTGGTTTCTTTCATTGGGCTAACGAACCCGAGCCATCTGATGATCGACTCGTCAATGAACTAAACTTGATCCGCAACGTGTGTATTCGTCTACAAGAAAGATTTGATGAAATCAAAGAGGAACGCACCAATGAGACAGCAGAATGGGAAAGGGAAAAGGCTGAGCTAACGTTGATCAACACTGTCATGCCGTTTCAAGTCCCAAGTTTCGTTTGA

mRNA sequence

ATGAAGAGGATTCACGTTAAAATAGTTGACCATTTTGATTGTAATGTCCATGAGTTGAATCAGAAGAACAATACAGATCACAGGGATCTGAATTCCACTCCACTGCTGTACGGATTTGATGAAATCAAAGAGGAACGCACCAATGAGACAGCAGAATGGGAAAGGGAAAAGGCTGAGCTAACGTTGATCAACACTGTCATGCCGTTTCAAGTCCCAAGTTTCGTTTGA

Coding sequence (CDS)

ATGAAGAGGATTCACGTTAAAATAGTTGACCATTTTGATTGTAATGTCCATGAGTTGAATCAGAAGAACAATACAGATCACAGGGATCTGAATTCCACTCCACTGCTGTACGGATTTGATGAAATCAAAGAGGAACGCACCAATGAGACAGCAGAATGGGAAAGGGAAAAGGCTGAGCTAACGTTGATCAACACTGTCATGCCGTTTCAAGTCCCAAGTTTCGTTTGA

Protein sequence

MKRIHVKIVDHFDCNVHELNQKNNTDHRDLNSTPLLYGFDEIKEERTNETAEWEREKAELTLINTVMPFQVPSFV
Homology
[Close]
BLAST of Carg16351 vs. NCBI nr
Match: KAG7011626.1 (hypothetical protein SDJN02_26532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 5.8e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MKRIHVKIVDHFDCNVHELNQKNNTDHRDLNSTPLLYGFDEIKEERTNETAEWEREKAEL 60
          MKRIHVKIVDHFDCNVHELNQKNNTDHRDLNSTPLLYGFDEIKEERTNETAEWEREKAEL
Sbjct: 1  MKRIHVKIVDHFDCNVHELNQKNNTDHRDLNSTPLLYGFDEIKEERTNETAEWEREKAEL 60

Query: 61 TLINTVMPFQVPSFV 76
          TLINTVMPFQVPSFV
Sbjct: 61 TLINTVMPFQVPSFV 75

The following BLAST results are available for this feature:
BLAST of Carg16351 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011626.15.8e-35100.00hypothetical protein SDJN02_26532, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg16351 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16351 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16351 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16351-RACarg16351-RAmRNA