Carg16270 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16270
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	Carg_Chr06: 2903251 .. 2908339 (-)
RNA-Seq Expression	Carg16270
Synteny	Carg16270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACGTGAACCAAGTAATCAACTCCATACAGAAAACTATGGGTATCCTATCAGCTGCCTCTTTTACAACGCCTGTATGCCCAATTTTGCTTCATCTAATATATAATTCGTTCTTTGTTCACTGCTTATTCCACTCTATACCAGTGATATTGTTCTTGATTTTGCAGTAATTCACTAGTTTTGGAGCTAGATAACATGGTTAAATGAGAAGTGTTCCATTCAGGTTCCTATGGGGGTTGTTGAGTGAGTCTTTCTAGCTTTACAAACATTTTTTTTTTTTTTACTCTTCCACTTATTGTTTGTTCGTTCTTACTTTTGTTCCATTAGTTTCATTGATGCTGGGAAGAATCCAGATGAATTTGCAAGGGATGTCTTAAATAGTTGAATTGCAAAAAATCAGAGTACAAAAGGCAGCACTGATGCCTTCAAGGTAGTCTTTAAATCTCCATGTGGCAGGCTTTTAAAATCTACTTATCTCTTATTTGTATTTTGATTTCCGAAAGTTCACGAAAGTCTTTATTGAATGTTGTACTACTTACTATATTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGTGAGTTGAAATTTCTTTTTGCTGTCAATTTTATCTCTACCTTCAAATTTTGCTCAAGATGATTGGATATATATACTTTATCCAACAAGTCCTAGTTTTTTTTTCTAAATAATTTGACTTGTTTTGTTTGTTTCGTGCTTCTTAGTGTGATCTTGCTCCTTATAAGTGAATTATGTAACTTACGTTGTATAAAGACATTATAAATCAGAATAAGCATGGGTCCTTCCCTGCAAGTTTGTTTGTGTAACGGCCTAAGCCTGCTATTAGCAGATATTGTCTGCTTTGGCCCATTACGTATGCTGTCAGCCTCACGATCTTAAAACGCATCTTTCAAAGTTACGCAACGGAACCGATACTCATCCAGATACTGTCCTTTTTCGACTTTCCTTTTCGGGCTTTCCCTTCTGGACTTCCCCATTATGTGTCTACTAGGGAGATGTTTCAACACCCTTATAAGTAATGCTTCATTTCCCTCCCCAACCGATGTGAGATCTCGCAGTTTGATACAAAAAAAATTGATAGGAGATGAAAATTTATTGCAATATCAAATTGGAATAAACGTGTAGTAGTCTTTCTAGATTACTCTCCCAGCACAAATTTTCCAAGCGATCACTTAATTCTAAATTTGCCTCACTCACTAGTTATAACCAGCCCTTTCTAGTATGTTCATTAACCAACGACTAATTTATTTATTGTGAGAGTACTTGTAAGGGTTATGCTGGGAATATTAGTAAGGTCATAGTGGTAATTAGTTGGAAGTGCCTTGGTTATAAAATAGAGGGAGCTTAGAGGGGGGAATGATTTTGGTATTGTCCAGTGTTTGCACTTTGGGAGAGAAACTCAAATCCTAGCAGAACCTCTGCTTTGGACAGCCCATGCCATGTCTGAGTTTGGAAAGCCAAAAACTTCTACTTCTGTTAAACAGCTATGTTGTGAGGTTGTTTGACCAGGGAATCAATTATAACAAGAACAGACATAAGTATGCATCTTAGAGAAAACTCTTGGTTTAGTTTTTGGTTTATTTATTTTCTTTATTGTTATTATTTTTTTAACTTTCAGGTTATTCATCAAGATTTTGCCGTAAAAGGTCATTATTTATAATTTTTTTCTGTTATTGGGCTCAAATTTTAATCTTGTTGCAACAAATGCAGGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTTAAGTGCCTTCTGAGTTGATTATCAGGTCTTTGAAGTTCTTCACATACCATCATTTTTCATCATGCCTTCAGCATATAATAATTTGATTGGGCATCATATTTCACATGATTTTAGTCTCATTCAAGGGATTGATAAGAGAATAATCACTCTTATCACCCCCTCCCCTCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAGAAAAAAGGAAAAAGAATCTACATCATCCTTATTCTATTACTCTGTTACTTGCTATGGAGATAACATTGTATATGCTGTGACTGACTTATTGAGTGGAAGATGGTCGCTTCCCATATTTCATGTTCCTCGTGATCTGAAACCATTATTTCGAATGAAATTGGGGTTTCTTACCTTAAAAAAAAAAAAAAAAAAAAAAAATCTACCATCAATTTCGAATTCAACTTTCTTTGGCGCATCCAAATGTGTGTTTTAGTTCTTTTGGAATTGTGAATCATGATCATGTGACTTTTACTTCTTTTGTACTGGAACATGAGCATGACATGGTTGCTAACTTGAACATGGTTTAATCTGGTAATCACAAGCATATTTTGATCAATTTGTTAAGAAATATATCTTTTTCTAGAAGTCAAATGTGTTTTTTTTTTTACTTCAACATGTGGGTGTGAGGATTTTCAATCTGCTGACTTATTGGTCGAAAGTACATCTAAGTTATGATCAATTTTCTGTAGAAGGTATATATTTTAACTGAAACTTCGTGAATTTGAACAGGGAATTCTTTCTTATTTTATACTCGATTCAGTTGAAAAGATGTTTTCAAGAACAAATTAGTTGCTCAAAATAGGTAAGGTAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGGTGTGTTTAAGTTCTGTTTTCTACTTTTTCTTGTTGAATGAATCTTTTCGTAACTGGATTCTCACTTTTCTGTTAATTAGTAGCGTAAATTCATGTACACTTTCTTTCCTCATTTCAAACTCTGAATTGTGAATCTCATATTTATCCCTAGCTGCTATTTCCCAAATGATTTGTTTGTGTACTTTGTATCCATCTATCCATAATTGTGCACATACCATGGGCTACGTCTAAGTGAGGTTTTAGCACACCTAAAAACACTTGTTCGAAAACACGCTTAGTACTCAAATTTCTCACTCAGATTCATCAACACTTGAAAGTACTCTGTAAAGAACTTTGTAAAGAAGCACTTGTTGACCGCTTTTGGTGTACTTGATCACTAAGAAAGTACTCAAACACACTTTTAAAAGTGCAGCATGGGTTGGTGAAATCTCAACTTCTCCATCATTATATTTTTCTTTATAGACAAATTTTTATTTTCATGCTACAAGCCTTGAAGATGTCGTTCTAGTTGAGACCCGTATATTTGTTTTTCTACCTTATCAAAGAATATGTTATTTAGTTTTGTAAACAATGGAAACAATACTAACAGTTTCTAGAAATGCAATATTCTCAGGTTGTAGAATATTGAAAGAGCCAAGAAGATCATTTAGTGGCTGTGATGTAGGTGGCATGCATTGGTGTTGCAGGGCATGAATCAAAGTATAGCTACCAATAACGATGCGAGTTTGAAGACCAACATTGGCTGTAGGAAGGATGGCAGGTACATTCTTGGTGCTAAGTTGAGTCTTATCTTACTTGTCAGGTTGATATTGGAAAATCCGGTGTATGCACCTTGAGGACTAACTTAAGTATGTGCTTTTAACATAAGAAAATAAGAGGCATTCAACTATGGGAACGTGTTGACTATGCTTCATAATGTGTTTAGAGCCTATGCTGTGATGTGATATTTTATACATCGGTATTTACCTTCTAAAAAGAATTCTCTTAAAATAAGTACAATTCTACCATGTCGTGTCATTTGTATTGTTATTTTGTGTGTGTTAGAATGAGTTGACCAAGTCGTATTGACAACCTAGCAAATGAGTGTTTGTATTGTCATCTTGTGACTTCTGGATGTCGGTTTTGAGTTAGGAACTGTCATGAATATCTCATACAATTGACAATATATTAGACACGAATGATGGAGTAAACTAGTGGGTTCAATCGATATGACTTTTCTAGTCATGGGATATGTTTAGTTAGTATAAGAACGACATTTTATGCATCATAGAAGCAACCCACGCCCTATAAGAAACGAACAACTTGGCTGGCTAGTATTATTATTGGAAAGTATACTTTCTTTTGATCCAATATTTAAACGTGATGTTTGAGAGACAACTAAGGAAAGGTCCCACAGAACAAAGAAAGGGGTTAAAAAGTCATGGTAGAATGATTTAGAAAGTTGAAAATAGACCAAAAACATCACATTACAAAGCATCATAGCATGTGATCTGTTGAAGTTGAATGATCACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTTAAATCAAAGTAATTGGATTGAGTTGTGAAGTGGGGGCCATGTGATTACAAATATATCATCTCATTTGATTCATATCCAAAGCAACAGATCAAGCCTTAGTTTGTGTCTTTGTTTTTTTCTAATTCTAGTTTCAAACTGAAGGCCAATGTGTTATGTGTGTGCCACTTTTCTTGGTCAAATTACCTCTTTTTCCTCTCTTAATTGTCTACATGATCTGGTTGTTGCTATGTCAATGCTCCAATTATTTTTTACTTTGAATTTTTTTTTGTAGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT

mRNA sequence

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAAATTAAAGGAGTTAAATCGTCACTTCCAGGGACTAAGACATTAATTAATGCAGGTATAAGGACCAAAGGTATAATTTGACCTATTTTTTTCTGCCTCTAATTTCAACTATATTTATATTAATTTAAGGTTAAATTAAAAAAACTATAAAGT

Coding sequence (CDS)

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCCAACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGGGGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCCCATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTTTACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAA

Protein sequence

MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLNCFKF

Homology

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: KAG7028210.1 (Mediator of RNA polymerase II transcription subunit 10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406.8 bits (1044), Expect = 1.1e-109
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQ 60
           MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQ
Sbjct: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQ 60

Query: 61  TFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELAR 120
           TFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELAR
Sbjct: 61  TFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTWGLVAANELAR 120

Query: 121 QKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFL 180
           QKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFL
Sbjct: 121 QKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFL 180

Query: 181 IESLRVYPLCYNQVGFPGLNCFKF 205
           IESLRVYPLCYNQVGFPGLNCFKF
Sbjct: 181 IESLRVYPLCYNQVGFPGLNCFKF 204

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: KAG6596674.1 (hypothetical protein SDJN03_09854, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 6.6e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 103 TRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTN 162
           +R  +TTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTN
Sbjct: 39  SRKHKTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTN 98

Query: 163 F 164
           F
Sbjct: 99  F 99

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_022923485.1 (mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923486.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923487.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923488.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923489.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923491.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923492.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022965379.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965380.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965381.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965383.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965384.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965385.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965386.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_023553208.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553209.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553210.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553211.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553212.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-22
Identity = 86/185 (46.49%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_008448559.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448560.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo] >XP_008448561.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-22
Identity = 86/185 (46.49%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. NCBI nr
Match: XP_038876576.1 (mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida] >XP_038876578.1 mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida] >XP_038876579.1 mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida] >XP_038876580.1 mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-22
Identity = 86/185 (46.49%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGS GNGSVINDTSA T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSSGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCAIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. ExPASy Swiss-Prot
Match: Q9FHZ2 (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Sbjct: 134 GLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLPNGDAKV 182

[Close]

BLAST of Carg16270 vs. ExPASy Swiss-Prot
Match: F4HPA7 (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 50  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Sbjct: 138 LRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSVLPNGDAKV 185

[Close]

BLAST of Carg16270 vs. ExPASy TrEMBL
Match: A0A6J1HLJ2 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111465259 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.1e-23
Identity = 86/185 (46.49%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. ExPASy TrEMBL
Match: A0A6J1E6X8 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111431167 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.1e-23
Identity = 86/185 (46.49%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. ExPASy TrEMBL
Match: A0A1S3BJY3 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.7e-23
Identity = 86/185 (46.49%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

[Close]

BLAST of Carg16270 vs. ExPASy TrEMBL
Match: A0A0A0L3Q2 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis sativus OX=3659 GN=MED10 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 85/185 (45.95%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDT   T+VDDS                         
Sbjct: 61  MDSAQNASSAAGTGGSGGNGSVINDTPVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 120

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLVLELDNM                                   
Sbjct: 121 SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 180

[Close]

BLAST of Carg16270 vs. ExPASy TrEMBL
Match: A0A6J1CVZ0 (Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX=3673 GN=LOC111014791 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-22
Identity = 84/185 (45.41%), Postives = 90/185 (48.65%), Query Frame = 0


Query: 1   MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT---------------------- 60
           MD AQNASSAAGTGGSGGNGSVINDTSA  +VDDS                         
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60

Query: 61  ---------------NSLVLELDNM----------------------------------- 98
                          NSLV+ELDNM                                   
Sbjct: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120

[Close]

BLAST of Carg16270 vs. TAIR 10
Match: AT1G26665.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 50  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           LRKH+LEELEQ FPDEV+ YREIRASSAAE +R+AQ+QS+LPNGD K+
Sbjct: 138 LRKHILEELEQNFPDEVDMYREIRASSAAEAKRLAQSQSVLPNGDAKV 185

[Close]

BLAST of Carg16270 vs. TAIR 10
Match: AT5G41910.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 49  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Sbjct: 134 GLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLPNGDAKV 182

[Close]

BLAST of Carg16270 vs. TAIR 10
Match: AT1G26665.2 (Mediator complex, subunit Med10 )

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 50  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL 98
           LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Sbjct: 138 LRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQSVLPNGDAKV 185

The following BLAST results are available for this feature:

BLAST of Carg16270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028210.1	1.1e-109	100.00	Mediator of RNA polymerase II transcription subunit 10a, partial [Cucurbita argy...	[more]
KAG6596674.1	6.6e-25	93.44	hypothetical protein SDJN03_09854, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923485.1	1.1e-22	46.49	mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata...	[more]
XP_008448559.1	1.8e-22	46.49	PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [C...	[more]
XP_038876576.1	3.1e-22	46.49	mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida]...	[more]

BLAST of Carg16270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHZ2	2.7e-13	75.51	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
F4HPA7	3.5e-13	77.08	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]

BLAST of Carg16270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLJ2	5.1e-23	46.49	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E6X8	5.1e-23	46.49	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=...	[more]
A0A1S3BJY3	8.7e-23	46.49	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0L3Q2	3.3e-22	45.95	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis sativus OX=365...	[more]
A0A6J1CVZ0	5.6e-22	45.41	Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX...	[more]

BLAST of Carg16270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26665.1	1.5e-14	77.08	Mediator complex, subunit Med10	[more]
AT5G41910.1	1.9e-14	75.51	Mediator complex, subunit Med10	[more]
AT1G26665.2	2.5e-14	77.08	Mediator complex, subunit Med10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 49..97
None	No IPR available	PANTHER	PTHR13345:SF9	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED	coord: 49..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16270-RA	Carg16270-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity