Carg16232 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg16232
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 2655170 .. 2655741 (+)
RNA-Seq ExpressionCarg16232
SyntenyCarg16232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTCCTCAACACTTATCCCCCCTTATAAATGAGCAATGTCAAATGAGCAAATGGATACAGCCGGATCCTCTCTCCATGAGCAGCAACAGAAAGAACAGTTTTGAATTAAAAGGTGAGTTTGATTTCTTCTTATTGTTTTTTGAGTAATATCTTAGTGTGTGGCTGATAAATGTAAGTGAAACTGGGTGTGGGTAGCTGATAAGTTAGCATATAAGCTAATGGTACATTTTCTCCCAAGTTCGCCGCCAGTATTAGCAACGAGAACCGCGAAAATTGCACCCTTTTATGCATTTTCCCTGGTGGATCTGGGATTTCTAGAAGAACTTTATTTGTTTGCCATATCTTCGGTAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTGGGGGGCGGCTGTTCGGTCGCCTCTGATACTAGGACCAATAGGTCAAAAATGGGTTTGTACCATAGGTGTTGAATGATCTACTTTAGACAGGTGTGGGCTCATAAATCCTTTCTTTCATTCATCAATAGGGTCCTGGTCGATCACTTTTCCGGACTAGGGTCGATAAGTGGAAGTCATAA

mRNA sequence

TTTCTCCTCAACACTTATCCCCCCTTATAAATGAGCAATGTCAAATGAGCAAATGGATACAGCCGGATCCTCTCTCCATGAGCAGCAACAGAAAGAACAGTTTTGAATTAAAAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTGGGGGGCGGCTGTTCGGTCGCCTCTGATACTAGGACCAATAGGTCAAAAATGGGGTCCTGGTCGATCACTTTTCCGGACTAGGGTCGATAAGTGGAAGTCATAA

Coding sequence (CDS)

ATGAGCAAATGGATACAGCCGGATCCTCTCTCCATGAGCAGCAACAGAAAGAACAGTTTTGAATTAAAAGGTGTTTATGGAATTATTATCGCGGGTTGGTCTAGTAATTGGGGGGCGGCTGTTCGGTCGCCTCTGATACTAGGACCAATAGGTCAAAAATGGGGTCCTGGTCGATCACTTTTCCGGACTAGGGTCGATAAGTGGAAGTCATAA

Protein sequence

MSKWIQPDPLSMSSNRKNSFELKGVYGIIIAGWSSNWGAAVRSPLILGPIGQKWGPGRSLFRTRVDKWKS
Homology
[Close]
BLAST of Carg16232 vs. NCBI nr
Match: KAG7028172.1 (hypothetical protein SDJN02_09352 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MSKWIQPDPLSMSSNRKNSFELKGVYGIIIAGWSSNWGAAVRSPLILGPIGQKWGPGRSL 60
          MSKWIQPDPLSMSSNRKNSFELKGVYGIIIAGWSSNWGAAVRSPLILGPIGQKWGPGRSL
Sbjct: 1  MSKWIQPDPLSMSSNRKNSFELKGVYGIIIAGWSSNWGAAVRSPLILGPIGQKWGPGRSL 60

Query: 61 FRTRVDKWKS 71
          FRTRVDKWKS
Sbjct: 61 FRTRVDKWKS 70

[Close]
BLAST of Carg16232 vs. NCBI nr
Match: KAG6596633.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1   MSKWIQPDPLSMSSNRKNSFELKG 25
           MSKWIQPDPLSMSSNRKNSFELKG
Sbjct: 718 MSKWIQPDPLSMSSNRKNSFELKG 741

[Close]
BLAST of Carg16232 vs. ExPASy TrEMBL
Match: A0A3B6HSF3 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 35/75 (46.67%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 24  GVYGIIIAGWSSNWGAAVRSPLILGPIGQKW----------------------------G 71
           GVYGIIIAGWSS  GAAV+SP+I GPIG KW                             
Sbjct: 87  GVYGIIIAGWSSKTGAAVQSPMIYGPIGPKWVCAAGVERSTLHRCGLTGLGLINPFFHSS 146

The following BLAST results are available for this feature:
BLAST of Carg16232 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028172.11.3e-33100.00hypothetical protein SDJN02_09352 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6596633.16.4e-04100.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
BLAST of Carg16232 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg16232 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3B6HSF33.0e-0746.67Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1[more]
BLAST of Carg16232 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16232-RACarg16232-RAmRNA