Carg16225 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16225
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ALK tyrosine kinase receptor scd-2 like
Location	Carg_Chr06: 2612822 .. 2615230 (-)
RNA-Seq Expression	Carg16225
Synteny	Carg16225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAATCTTTGTCTGCTTGTCCATGAAGTTTGACTCTTTTCGATCTTCGTTGACAACTTCGGTTCCCGGGTTTCTTCGGCAGAAGTTTCCACTTTCAATTTCCAGTCCAAACATGGCGATTTACGATCTCTCAACGGCATCCGCCGTGCTGCTTCTCCTAATGACGGCGGCGGCCGTTGAAGCTAGGGACAGCAACCGAATTTTCTCTCCTTGCGCCGACACGACTGTTGAGAAGTCCGACGGTTTCACCTTAGGGCTTGCTTTTGCGACGCAGCAGAAGTTCGTCTTTAACAAAACGTTGAATTTGTCTCCTTGTGACAGTAGGCTTGCTCTTACGAATGGAAATTCTCTGATCTCTGTGTTTAGACCTATGGTTGATGAGATCTCCCTCCTCACCGTCAATACTACTCCCTCCGTGTCCAATTTCAATCCGGTTAGTTCTTCGAATTCTTTGTTCTTTTTCCTCTTTTGATGTCGAATTTATCGGTTGGTTCTGTTTGATCTTCGTTTGAAGTTGATACGAGCGCTAGTATTAGATTTTGTGCGTGAGTTTGTCGAATCGGATGGTTATTAGGTTTTGTGAAATTGAGGTAATAGGTTTTGTATGACTCTCAAATCAGACATGGGTTTGGTTTCTAAACCCTACTCCTAAGCACGAAACAGGGGGGCAAACAGAACAGATCATTTTGGAATCACTTCACGTGCTTTAATTGTATGATTCAAGCTCGATTTGATTTGGGATTTTTTTGGTATATGAATTGTTTCTTTGAGGATATTATAACCAATAGCTATTGGTTGGCATTCTGCATTACTCAATGTTGACAAGAAACTCCAATGTTGATGTTTAGTTGGAAAAATAAGGAATTTCACTGAAGATGGTATTAAGGCGTTCTACTCTCAGTTCGTGTTTGAGAGAGTAGATAGTCGCCCTCCCTCTTCCGCCTTAAGAGGATGCCTTCCTAATGCTTGGGCTGCTTTGTTTCCATAGAAGGAAGAGATTAATTGTATGCGCTTGTTTGATTTCTATTGCTCACGTAGATCTAAAATCTTTTCTATTAGTTTATTTACTACAAATGCTAGTGTTCTGTTCTTACCCGTGGTGGACTCACTATTCCTTTTTCATTTCATCCATTACCAGTCTTCCAATAGCTATATGGTTGCATTTGCTGGACGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCGCTGATGAACAACATGCCGTGACCAGCTTTACTCTGGTAAGTTCATGGCATAGGAAGTAGAAAGTAAACTAAAGACACAAGACATGGATTTAATAGAACACTGACTTGCTGATATGTTGTTTTTAAGAATATGACATCCCAAGATTCGGCCTTGTTGGCCAAGGTTCGTGGTGTCCGAGTGTTGCCTATGATAGGGGGGTTCATGTAACTAATAATCGTTTGATAAACATTCAAAATACTTTTGTACTTTCACACTCATCTATTCAATGGTTGCAAAGTTATTTGCCACATTACAACAACTTCCTCCAATAATTTCTTGTAATGAGAAGGGGAGAGGATTGGACTAGAGAAATTCATTGTTGAGGATAGTGGGTAGATTTTCTGTGAGATTACACATAGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAAACTCTCCCTAGTAAACGCTTTTTAAAAACTTTGAGGGGAAGCCCGAAAGCGAAAGCCCAAATAGAACAATATCTGTTAGCGGTGGGTTTTGGGTTGGTACATTATTAGAGCATGTTGACTTCTAATCCTAGAGAAGTGTTTGGACAATCCATTGTGCTCTTTATGATTATTTTCACATTGGCATCAACTCCATCAAATGTTCTCGTGTACAGGTGCTCGAGTTCGAGAAGGGCAGGCTGCAAAACCTGTTCTGGAAAAGGGACGGTTGTGCTCAATGCTCAAACAACAACACCTTTGTATGCATCAACAATCAGGATTGTGCAATCAGAACAAGCAACTGCAAATATCGTGGCGGTCCTGTCGATTGCAGTCTTGCTATACAACTAGCATTCTCGGGCACCGATAAGCACCTTTCGGTTTTCAACTCTTGGTACGAAGTCTCAAAACTTCGCCAGTACTCGCTCTTCAATCTGTATTCAAATCTCAAAGATTCTCTCACTAGTCAGTACAACAAGATCTTCCAATAGAGCAGCATGGCACATATATTTTGGTTAATGCATATTCCCATACATGTACGTTGTAATTCAGTTTAAGCATCAAATTCCTTTCATATCTTAAATGATTCCCCATACGCAGGGCTACCTTATATGTATACTAAGAGTATTTCGGATACACAGTCGATCGGACCCTAATACTTATATAATTATAAGTTTGCACACGTGTGAAACCTTCGTTTTTTGAATCGATAAACCAACAAAAGT

mRNA sequence

GGGAATCTTTGTCTGCTTGTCCATGAAGTTTGACTCTTTTCGATCTTCGTTGACAACTTCGGTTCCCGGGTTTCTTCGGCAGAAGTTTCCACTTTCAATTTCCAGTCCAAACATGGCGATTTACGATCTCTCAACGGCATCCGCCGTGCTGCTTCTCCTAATGACGGCGGCGGCCGTTGAAGCTAGGGACAGCAACCGAATTTTCTCTCCTTGCGCCGACACGACTGTTGAGAAGTCCGACGGTTTCACCTTAGGGCTTGCTTTTGCGACGCAGCAGAAGTTCGTCTTTAACAAAACGTTGAATTTGTCTCCTTGTGACAGTAGGCTTGCTCTTACGAATGGAAATTCTCTGATCTCTGTGTTTAGACCTATGGTTGATGAGATCTCCCTCCTCACCGTCAATACTACTCCCTCCGTGTCCAATTTCAATCCGTCTTCCAATAGCTATATGGTTGCATTTGCTGGACGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCGCTGATGAACAACATGCCGTGACCAGCTTTACTCTGAATATGACATCCCAAGATTCGGCCTTGTTGGCCAAGGTGCTCGAGTTCGAGAAGGGCAGGCTGCAAAACCTGTTCTGGAAAAGGGACGGTTGTGCTCAATGCTCAAACAACAACACCTTTGTATGCATCAACAATCAGGATTGTGCAATCAGAACAAGCAACTGCAAATATCGTGGCGGTCCTGTCGATTGCAGTCTTGCTATACAACTAGCATTCTCGGGCACCGATAAGCACCTTTCGGTTTTCAACTCTTGGTACGAAGTCTCAAAACTTCGCCAGTACTCGCTCTTCAATCTGTATTCAAATCTCAAAGATTCTCTCACTAGTCAGTACAACAAGATCTTCCAATAGAGCAGCATGGCACATATATTTTGGTTAATGCATATTCCCATACATGTACGTTGTAATTCAGTTTAAGCATCAAATTCCTTTCATATCTTAAATGATTCCCCATACGCAGGGCTACCTTATATGTATACTAAGAGTATTTCGGATACACAGTCGATCGGACCCTAATACTTATATAATTATAAGTTTGCACACGTGTGAAACCTTCGTTTTTTGAATCGATAAACCAACAAAAGT

Coding sequence (CDS)

ATGAAGTTTGACTCTTTTCGATCTTCGTTGACAACTTCGGTTCCCGGGTTTCTTCGGCAGAAGTTTCCACTTTCAATTTCCAGTCCAAACATGGCGATTTACGATCTCTCAACGGCATCCGCCGTGCTGCTTCTCCTAATGACGGCGGCGGCCGTTGAAGCTAGGGACAGCAACCGAATTTTCTCTCCTTGCGCCGACACGACTGTTGAGAAGTCCGACGGTTTCACCTTAGGGCTTGCTTTTGCGACGCAGCAGAAGTTCGTCTTTAACAAAACGTTGAATTTGTCTCCTTGTGACAGTAGGCTTGCTCTTACGAATGGAAATTCTCTGATCTCTGTGTTTAGACCTATGGTTGATGAGATCTCCCTCCTCACCGTCAATACTACTCCCTCCGTGTCCAATTTCAATCCGTCTTCCAATAGCTATATGGTTGCATTTGCTGGACGGAAATATGCTGCAAGGTCCCCTCCAATTTTTGTCGCTGATGAACAACATGCCGTGACCAGCTTTACTCTGAATATGACATCCCAAGATTCGGCCTTGTTGGCCAAGGTGCTCGAGTTCGAGAAGGGCAGGCTGCAAAACCTGTTCTGGAAAAGGGACGGTTGTGCTCAATGCTCAAACAACAACACCTTTGTATGCATCAACAATCAGGATTGTGCAATCAGAACAAGCAACTGCAAATATCGTGGCGGTCCTGTCGATTGCAGTCTTGCTATACAACTAGCATTCTCGGGCACCGATAAGCACCTTTCGGTTTTCAACTCTTGGTACGAAGTCTCAAAACTTCGCCAGTACTCGCTCTTCAATCTGTATTCAAATCTCAAAGATTCTCTCACTAGTCAGTACAACAAGATCTTCCAATAG

Protein sequence

MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ

Homology

[Close]

BLAST of Carg16225 vs. NCBI nr
Match: KAG7028165.1 (hypothetical protein SDJN02_09345 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 567.4 bits (1461), Expect = 7.1e-158
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDLSTASAVLLLLMTAAAVEARDSNRI 60
           MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDLSTASAVLLLLMTAAAVEARDSNRI
Sbjct: 1   MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDLSTASAVLLLLMTAAAVEARDSNRI 60

Query: 61  FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE 120
           FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE
Sbjct: 61  FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE 120

Query: 121 ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSA 180
           ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSA
Sbjct: 121 ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSA 180

Query: 181 LLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI 240
           LLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI
Sbjct: 181 LLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI 240

Query: 241 QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ 289
           QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ
Sbjct: 241 QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ 288

[Close]

BLAST of Carg16225 vs. NCBI nr
Match: KAG6596627.1 (hypothetical protein SDJN03_09807, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 535.0 bits (1377), Expect = 3.9e-148
Identity = 275/288 (95.49%), Postives = 275/288 (95.49%), Query Frame = 0


Query: 1   MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDLSTASAVLLLLMTAAAVEARDSNRI 60
           MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYD STASAVLLLLMTAAAVEARDSNRI
Sbjct: 1   MKFDSFRSSLTTSVPGFLRQKFPLSISSPNMAIYDFSTASAVLLLLMTAAAVEARDSNRI 60

Query: 61  FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE 120
           FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE
Sbjct: 61  FSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSRLALTNGNSLISVFRPMVDE 120

Query: 121 ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSA 180
           ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTL        
Sbjct: 121 ISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPIFVADEQHAVTSFTL-------- 180

Query: 181 LLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI 240
               VLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI
Sbjct: 181 ----VLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCAIRTSNCKYRGGPVDCSLAI 240

Query: 241 QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ 289
           QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ
Sbjct: 241 QLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTSQYNKIFQ 276

[Close]

BLAST of Carg16225 vs. NCBI nr
Match: XP_022939140.1 (uncharacterized protein LOC111445105 [Cucurbita moschata])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 243/258 (94.19%), Postives = 246/258 (95.35%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAIYDLSTASAVLLLLMTAAAVEARDSNR+FSPCADTTVEKSDGFTLGLAFATQQKFVFN
Sbjct: 1   MAIYDLSTASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATQQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTLNLSPCDSRLALTNGNSLIS+FRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISMFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVADEQHAVTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADEQHAVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSLFN
Sbjct: 181 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 246

[Close]

BLAST of Carg16225 vs. NCBI nr
Match: XP_023538924.1 (uncharacterized protein LOC111799707 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.0 bits (1216), Expect = 1.8e-129
Identity = 242/258 (93.80%), Postives = 243/258 (94.19%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAIYDLS ASAVLLLLMTAAAVEARDSNR+FSPCADTTVEKSDGFTLGLAFAT QKFVFN
Sbjct: 1   MAIYDLSRASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATHQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSN YMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNGYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVADEQHAVTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADEQHAVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN
Sbjct: 181 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 246

[Close]

BLAST of Carg16225 vs. NCBI nr
Match: XP_023005908.1 (uncharacterized protein LOC111498771 [Cucurbita maxima])

HSP 1 Score: 471.5 bits (1212), Expect = 5.3e-129
Identity = 242/258 (93.80%), Postives = 244/258 (94.57%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAIYDLSTASAVLLLLMTAAAVEARDSNR+FSPCADTTVEKSDGFTLGLAFATQQKFVFN
Sbjct: 1   MAIYDLSTASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATQQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTV+TTPSVSNFNPSSNSYMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVSTTPSVSNFNPSSNSYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVADEQHAVTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADEQHAVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHL VFNSWYEVSKL QYSLFN
Sbjct: 181 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLLVFNSWYEVSKLCQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 246

[Close]

BLAST of Carg16225 vs. ExPASy TrEMBL
Match: A0A6J1FLU2 (uncharacterized protein LOC111445105 OS=Cucurbita moschata OX=3662 GN=LOC111445105 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 8.0e-131
Identity = 243/258 (94.19%), Postives = 246/258 (95.35%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAIYDLSTASAVLLLLMTAAAVEARDSNR+FSPCADTTVEKSDGFTLGLAFATQQKFVFN
Sbjct: 1   MAIYDLSTASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATQQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTLNLSPCDSRLALTNGNSLIS+FRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISMFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVADEQHAVTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADEQHAVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSLFN
Sbjct: 181 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 246

[Close]

BLAST of Carg16225 vs. ExPASy TrEMBL
Match: A0A6J1L3G6 (uncharacterized protein LOC111498771 OS=Cucurbita maxima OX=3661 GN=LOC111498771 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.6e-129
Identity = 242/258 (93.80%), Postives = 244/258 (94.57%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAIYDLSTASAVLLLLMTAAAVEARDSNR+FSPCADTTVEKSDGFTLGLAFATQQKFVFN
Sbjct: 1   MAIYDLSTASAVLLLLMTAAAVEARDSNRVFSPCADTTVEKSDGFTLGLAFATQQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTV+TTPSVSNFNPSSNSYMVAFAGRK
Sbjct: 61  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVSTTPSVSNFNPSSNSYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVADEQHAVTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADEQHAVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHL VFNSWYEVSKL QYSLFN
Sbjct: 181 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLLVFNSWYEVSKLCQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 246

[Close]

BLAST of Carg16225 vs. ExPASy TrEMBL
Match: A0A6J1J6R6 (uncharacterized protein LOC111481736 OS=Cucurbita maxima OX=3661 GN=LOC111481736 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 8.0e-115
Identity = 219/258 (84.88%), Postives = 229/258 (88.76%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAI DLS  S VLLLL+TA  VEARD+NR+FSPC DTTVEKSDGFTLGLAFAT+QKFVFN
Sbjct: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTL LSPCDSRLALTNGN+LISVFRP VDEISLLTVNTTPSVS FNPSSN YMVAFAGRK
Sbjct: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSTFNPSSNGYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFV+D QH VTSFTL            VLEFEKGRLQNLFWKRDGCA+CSNN+
Sbjct: 121 YAARSPPIFVSDGQHIVTSFTL------------VLEFEKGRLQNLFWKRDGCARCSNNH 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRT+NCK   GPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSL +
Sbjct: 181 TFVCINNQDCAIRTNNCK-NSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLVD 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 245

[Close]

BLAST of Carg16225 vs. ExPASy TrEMBL
Match: A0A6J1F5Z3 (uncharacterized protein LOC111442414 OS=Cucurbita moschata OX=3662 GN=LOC111442414 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 5.2e-114
Identity = 217/258 (84.11%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAI DLS  S VLLLL+TA  VEARD+NR+FSPC DTTVEKSDGFTLGLAFAT+QKFVFN
Sbjct: 1   MAISDLSPLSFVLLLLVTAVVVEARDNNRVFSPCIDTTVEKSDGFTLGLAFATEQKFVFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTL LSPCDSRLALTNGN+LISVFRP VDEISLLTVNTTPSVS+FNPSS+ YMVAFAGRK
Sbjct: 61  KTLKLSPCDSRLALTNGNALISVFRPKVDEISLLTVNTTPSVSSFNPSSHGYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFV+D QH VTSFTL            VLEFEKGRLQNLFWKRDGCA+CSNN+
Sbjct: 121 YAARSPPIFVSDGQHIVTSFTL------------VLEFEKGRLQNLFWKRDGCARCSNNH 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCINNQDCAIRT+NCK   GPVDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSL +
Sbjct: 181 TFVCINNQDCAIRTNNCK-NSGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLVD 240

Query: 271 LYSNLKDSLTSQYNKIFQ 289
           LYSNLKDSLTSQYNKIFQ
Sbjct: 241 LYSNLKDSLTSQYNKIFQ 245

[Close]

BLAST of Carg16225 vs. ExPASy TrEMBL
Match: A0A5A7TKL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004720 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 6.4e-112
Identity = 213/257 (82.88%), Postives = 225/257 (87.55%), Query Frame = 0


Query: 31  MAIYDLSTASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFN 90
           MAI   S ASAVL+LL+TA  VEA D+NR+FSPC DTTVE SDGFTLG AFATQQKF FN
Sbjct: 1   MAISYPSPASAVLILLVTAVLVEAGDNNRVFSPCTDTTVETSDGFTLGFAFATQQKFFFN 60

Query: 91  KTLNLSPCDSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRK 150
           KTL LSPCDSRL LTNGNSLISVFRP VDEISLLTVNT+ SVS+F+PSSN YMVAFAGRK
Sbjct: 61  KTLQLSPCDSRLGLTNGNSLISVFRPKVDEISLLTVNTSRSVSSFDPSSNGYMVAFAGRK 120

Query: 151 YAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNN 210
           YAARSPPIFVAD+QH VTSFTL            VLEFEKGRLQNLFWKRDGCAQCSNNN
Sbjct: 121 YAARSPPIFVADQQHIVTSFTL------------VLEFEKGRLQNLFWKRDGCAQCSNNN 180

Query: 211 TFVCINNQDCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFN 270
           TFVCI+NQDCAIRT++CK  GG VDCSLAIQLAFSGTDKHLSVFNSWYEVS+LRQYSLFN
Sbjct: 181 TFVCIHNQDCAIRTNSCKNNGGSVDCSLAIQLAFSGTDKHLSVFNSWYEVSRLRQYSLFN 240

Query: 271 LYSNLKDSLTSQYNKIF 288
           LYSNLKDSLTSQYNKIF
Sbjct: 241 LYSNLKDSLTSQYNKIF 245

[Close]

BLAST of Carg16225 vs. TAIR 10
Match: AT3G44150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 284.6 bits (727), Expect = 8.6e-77
Identity = 142/249 (57.03%), Postives = 181/249 (72.69%), Query Frame = 0


Query: 39  ASAVLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPC 98
           ++ +L + +   +  + ++N I+SPC+DT +++SDGFT G+AF+++  F  N+T+ LSPC
Sbjct: 13  SAVILTVALGGDSGGSGNTNTIYSPCSDTRIQRSDGFTFGIAFSSRPSFFINQTVLLSPC 72

Query: 99  DSRLALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPSSNSYMVAFAGRKYAARSPPI 158
           D RL+L   NS  SVFRP +DEISLL++NT+   + F  +   YMVAFAGRKYAARS P 
Sbjct: 73  DRRLSLAAMNSQFSVFRPKIDEISLLSINTS---AFFPDNYGGYMVAFAGRKYAARSIPA 132

Query: 159 FVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQ 218
           F+A+    VTSFTL            V+EF+KGRLQNL+WKRDGCA C  N  FVC+N Q
Sbjct: 133 FIANSTFIVTSFTL------------VMEFQKGRLQNLYWKRDGCASCKGNQNFVCLNKQ 192

Query: 219 DCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDS 278
           DCAIRT +CK RGG VDCSL IQLAFSGTDKHL+V NSWYEV  L+QYSL+ LYSNLK S
Sbjct: 193 DCAIRTPSCKGRGGAVDCSLGIQLAFSGTDKHLAVLNSWYEVENLKQYSLYGLYSNLKSS 246

Query: 279 LTSQYNKIF 288
           LT+Q+N  F
Sbjct: 253 LTNQFNNFF 246

[Close]

BLAST of Carg16225 vs. TAIR 10
Match: AT3G11800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 281.6 bits (719), Expect = 7.2e-76
Identity = 141/246 (57.32%), Postives = 182/246 (73.98%), Query Frame = 0


Query: 46  LMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVF---NKTLNLSPCDSRL 105
           ++T++  EA D+N+++SPC+D+TV   DGFT G+AFA +  F     +K++  SPCD R 
Sbjct: 14  VLTSSLTEAGDNNQVYSPCSDSTVAIGDGFTFGIAFAAKDSFFSTNRSKSVQYSPCDHRH 73

Query: 106 ALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNP-SSNSYMVAFAGRKYAARSPPIFVA 165
              NGNS ++VFRP VDEI+LLT+NT+ S S+F P +S  YMVAFAG KYAARS PI VA
Sbjct: 74  LSLNGNSEVAVFRPKVDEITLLTINTSSS-SSFRPDASKGYMVAFAGAKYAARSLPIMVA 133

Query: 166 DEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQCSNNNTFVCINNQDCA 225
           D  H VTSFTL            VLEF+KGRL+N+FWK+DGC++CS ++ FVC+N ++CA
Sbjct: 134 DSNHIVTSFTL------------VLEFQKGRLENMFWKKDGCSKCSGDSKFVCLNKEECA 193

Query: 226 IRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDSLTS 285
           I+  NCK +GG VDCSL IQLAFSGTDKH +  NSWYEV+ L+QYSL+ LYSNLKDSLT+
Sbjct: 194 IKPQNCKNQGGQVDCSLGIQLAFSGTDKHYTALNSWYEVANLKQYSLYGLYSNLKDSLTN 246

Query: 286 QYNKIF 288
            +  IF
Sbjct: 254 PFKNIF 246

[Close]

BLAST of Carg16225 vs. TAIR 10
Match: AT2G15910.1 (CSL zinc finger domain-containing protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-59
Identity = 120/242 (49.59%), Postives = 169/242 (69.83%), Query Frame = 0


Query: 42  VLLLLMTAAAVEARDSNRIFSPCADTTVEKSDGFTLGLAFATQQKFVFNKTLNLSPCDSR 101
           +++++M    V A D+N ++SPC+DT + K DGFT+G+A ++++ F F   + LSPCD+R
Sbjct: 130 MMIVMMVDDWVGAADNNPVYSPCSDTQISKGDGFTIGIAISSKEAF-FLDQVQLSPCDTR 189

Query: 102 LALTNGNSLISVFRPMVDEISLLTVNTTPSVSNFNPS-SNSYMVAFAGRKYAARSPPIFV 161
           L L    + +++FRP VDEISLL+++T    S FNPS +  +MV FAG KYAARS P+ V
Sbjct: 190 LGLAAKMAQLALFRPKVDEISLLSIDT----SKFNPSEAGGFMVGFAGSKYAARSYPVKV 249

Query: 162 ADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRDGCAQC--SNNNTFVCINNQ 221
           AD  + +T+FTL M    S L   VLEF+KG LQNLFWK  GC  C  + +++ VC+N  
Sbjct: 250 ADGSNTITAFTLVMKLTLSPL---VLEFQKGVLQNLFWKSFGCDLCKGTGSSSSVCLNGT 309

Query: 222 DCAIRTSNCKYRGGPVDCSLAIQLAFSGTDKHLSVFNSWYEVSKLRQYSLFNLYSNLKDS 281
           DCA+ TS CK  GG  +C++ IQ+AFSGTD++L   N+WYEV+ LRQYSL +LY+N  DS
Sbjct: 310 DCAVPTSKCKANGGQANCNIGIQVAFSGTDRNLESLNTWYEVNNLRQYSLTDLYANAVDS 363

[Close]

BLAST of Carg16225 vs. TAIR 10
Match: AT3G48630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 64 Blast hits to 64 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 27/64 (42.19%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 142 YMVAFAGRKYAARSPPIFVADEQHAVTSFTLNMTSQDSALLAKVLEFEKGRLQNLFWKRD 201
           Y V   G +  +   P F+A+    VTSFT             V+EF+KGRLQNL+WKRD
Sbjct: 2   YNVGTRGSEIRSEVDPAFIANSTFIVTSFTW------------VMEFQKGRLQNLYWKRD 53

Query: 202 GCAQ 206
            CA+
Sbjct: 62  VCAK 53

The following BLAST results are available for this feature:

BLAST of Carg16225 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028165.1	7.1e-158	100.00	hypothetical protein SDJN02_09345 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596627.1	3.9e-148	95.49	hypothetical protein SDJN03_09807, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939140.1	1.6e-130	94.19	uncharacterized protein LOC111445105 [Cucurbita moschata]	[more]
XP_023538924.1	1.8e-129	93.80	uncharacterized protein LOC111799707 [Cucurbita pepo subsp. pepo]	[more]
XP_023005908.1	5.3e-129	93.80	uncharacterized protein LOC111498771 [Cucurbita maxima]	[more]

BLAST of Carg16225 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLU2	8.0e-131	94.19	uncharacterized protein LOC111445105 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1L3G6	2.6e-129	93.80	uncharacterized protein LOC111498771 OS=Cucurbita maxima OX=3661 GN=LOC111498771...	[more]
A0A6J1J6R6	8.0e-115	84.88	uncharacterized protein LOC111481736 OS=Cucurbita maxima OX=3661 GN=LOC111481736...	[more]
A0A6J1F5Z3	5.2e-114	84.11	uncharacterized protein LOC111442414 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A5A7TKL4	6.4e-112	82.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg16225 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44150.1	8.6e-77	57.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11800.1	7.2e-76	57.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G15910.1	2.1e-59	49.59	CSL zinc finger domain-containing protein	[more]
AT3G48630.1	2.1e-06	42.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21454:SF33	SUBFAMILY NOT NAMED	coord: 31..287
IPR044248	Diphthamide biosynthesis protein 3/4-like	PANTHER	PTHR21454	DPH3 HOMOLOG-RELATED	coord: 31..287

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16225-RA	Carg16225-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017183	peptidyl-diphthamide biosynthetic process from peptidyl-histidine
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding