Carg16076 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16076
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Carg_Chr07: 2030316 .. 2031253 (+)
RNA-Seq Expression	Carg16076
Synteny	Carg16076

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAATCTGTACTCGGGTGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCTGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGTACAATTACTTTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTCCTCACCAATTTATACATATTATAATTTTTTAATTTGAATTTAGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCAGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATCTTCCCGGTGAGACCTCCTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA

mRNA sequence

ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAATCTGTACTCGGGTGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCTGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCAGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATCTTCCCGGTGAGACCTCCTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA

Coding sequence (CDS)

ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAATCTGTACTCGGGTGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCTGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTATTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCAGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATCTTCCCGGTGAGACCTCCTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA

Protein sequence

MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQTRSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS

Homology

[Close]

BLAST of Carg16076 vs. NCBI nr
Match: KAG7026763.1 (Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 574.7 bits (1480), Expect = 4.4e-160
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60

Query: 61  RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF 120
           RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF
Sbjct: 61  RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF 120

Query: 121 PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV 180
           PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV
Sbjct: 121 PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV 180

Query: 181 FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF 240
           FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF
Sbjct: 181 FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF 240

Query: 241 IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 283

[Close]

BLAST of Carg16076 vs. NCBI nr
Match: KAG6594796.1 (Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 570.9 bits (1470), Expect = 6.3e-159
Identity = 282/283 (99.65%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQ QQHQQQSLFQT
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQPQQHQQQSLFQT 60

Query: 61  RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF 120
           RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF
Sbjct: 61  RSHNNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGF 120

Query: 121 PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV 180
           PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV
Sbjct: 121 PCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAV 180

Query: 181 FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF 240
           FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF
Sbjct: 181 FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNF 240

Query: 241 IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 IAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 283

[Close]

BLAST of Carg16076 vs. NCBI nr
Match: XP_023518391.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 560.5 bits (1443), Expect = 8.5e-156
Identity = 281/288 (97.57%), Postives = 282/288 (97.92%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP---QQHQQHQQQSL 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP   QQHQQHQQQSL
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSL 60

Query: 61  FQTRSH--NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120
           FQTRSH  NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC
Sbjct: 61  FQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCC 120

Query: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180
           NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL
Sbjct: 121 NTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAEL 180

Query: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGL 240
           NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSSGGGGGL
Sbjct: 181 NSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGL 240

Query: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 QPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288

[Close]

BLAST of Carg16076 vs. NCBI nr
Match: XP_022963105.1 (protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata])

HSP 1 Score: 553.9 bits (1426), Expect = 8.0e-154
Identity = 278/285 (97.54%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP   QQHQQQSLFQ 
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP---QQHQQQSLFQA 60

Query: 61  RSH--NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR 120
           RSH  NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR
Sbjct: 61  RSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR 120

Query: 121 GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP 180
           GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP
Sbjct: 121 GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP 180

Query: 181 AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL 240
           AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL
Sbjct: 181 AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL 240

Query: 241 NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 282

[Close]

BLAST of Carg16076 vs. NCBI nr
Match: XP_023003919.1 (protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 551.2 bits (1419), Expect = 5.2e-153
Identity = 277/287 (96.52%), Postives = 279/287 (97.21%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60

Query: 61  RSH----NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCN 120
           RSH    NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRSCCN
Sbjct: 61  RSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRSCCN 120

Query: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELN 180
           TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTSGLEIGNFPAELN
Sbjct: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSGLEIGNFPAELN 180

Query: 181 SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQ 240
           SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSS GGGGLQ
Sbjct: 181 SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSGGGGLQ 240

Query: 241 PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 286

[Close]

BLAST of Carg16076 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 168/375 (44.80%), Postives = 217/375 (57.87%), Query Frame = 0


Query: 3   MSGFFTL---------GSTDQEHQQPDTNRPNQTLPP--DTLFWYKP------------- 62
           M+GFF+L         G  +QE  + +TN P    PP  +   WY+              
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSNTNPP----PPVSEAWLWYRNPNVNANANTNVNA 60

Query: 63  ----------GSVELWQPQ-------QHQQHQQQ-SLFQTRS------HNNNNNLYSGES 122
                     G++ELWQ         QHQQHQQ+  L+ + +       N+N    SGE+
Sbjct: 61  NAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGET 120

Query: 123 SS----RSGNLMMI---SSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVK 182
           S+    R+  +MMI    SG G GG+SCQDCGNQAKKDC+HMRCR+CC +RGF C THV+
Sbjct: 121 STAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVR 180

Query: 183 STWVPAAKRRQRQQKLAALQTH---------PKRHTDYNIPTTNT----------SGLEI 242
           STWVPAAKRR+RQQ+LA +Q           PKRH + N+P T++          SGLE+
Sbjct: 181 STWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRE-NLPATSSSLVCTRIPSHSGLEV 240

Query: 243 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPEN------NY 284
           GNFPAE++S AVFRCVR+SS +D ++++AYQTAV+IGGH+FKGILYD GP +      N 
Sbjct: 241 GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNV 300

[Close]

BLAST of Carg16076 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-60
Identity = 150/338 (44.38%), Postives = 196/338 (57.99%), Query Frame = 0


Query: 3   MSGFFTL----GSTDQEHQQPDTNRPNQTLPPDTLFWYKP--------------GSVELW 62
           M+GFF+L    G    ++ + +TN P+ +     L+   P              G++ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 63  QPQQHQ----QHQQQSLFQTRSHNNNNNLYSGESS-----SRSGNLMMISSGSGGGGISC 122
           Q   +Q    Q QQQ   +   + +   L  G S+     +  G LMM+ SGSG GG SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 123 QDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQ-------T 182
           QDCGNQ+KKDC+HMRCR+CC +RG  C THVKSTWVPAAKRR+RQQ+L+  Q       +
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGS 180

Query: 183 HPKRHTD-----------YNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYA 242
            PKR  +             IP+ NTSGLE+GNFP E++S AVFRCVR+SS DD +++YA
Sbjct: 181 VPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYA 240

Query: 243 YQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNFIAGAADANAAS------ 284
           Y+TAV+IGGHVFKG+LYDQGP          S  GGG QPLN I     A+++S      
Sbjct: 241 YKTAVSIGGHVFKGVLYDQGPAER-------SSSGGGSQPLNLITAGPSASSSSPNVSCN 300

[Close]

BLAST of Carg16076 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.8e-58
Identity = 158/357 (44.26%), Postives = 207/357 (57.98%), Query Frame = 0


Query: 3   MSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYK--------------PGS---VELWQ 62
           M+ FF+LG  +QE Q  + +     +P ++  W+               P +    ELWQ
Sbjct: 1   MANFFSLGG-NQEQQHQEISSSQALVPTESNNWFLYRNEHHHHHHNQEIPNTYKGFELWQ 60

Query: 63  ----PQ-QHQQHQQQSLFQTRSHNNNNNLYSGE-------------------SSSRSGNL 122
               PQ QHQ HQQQ  F+   +    +LYS +                    +SRSG +
Sbjct: 61  SGNTPQHQHQHHQQQQQFRHPIY-PLQDLYSTDVGLGVGPSRSGFDISAGDHEASRSGFV 120

Query: 123 MMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQ 182
           MM    SGGGGISCQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+RQQ
Sbjct: 121 MM---RSGGGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQ 180

Query: 183 KLAALQTHPKRHTDYN---------------------IPTTNTSGLEIGNFPAELNSPAV 242
           +LAALQ   + H + N                     +P +NT+GLE+G FP+++ + AV
Sbjct: 181 QLAALQQQQQGHNNNNNNHKNKRQREDPSASSLVSTRLP-SNTNGLEVGKFPSKVRTSAV 240

Query: 243 FRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY-----LPGETSSGG-GGG 284
           F+C+++SS +D +DQ AYQ AV+IGGHVFKGILYDQG E+ Y       G+TSSGG  GG
Sbjct: 241 FQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHESQYNNMVAAGGDTSSGGSAGG 300

[Close]

BLAST of Carg16076 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-53
Identity = 157/365 (43.01%), Postives = 187/365 (51.23%), Query Frame = 0


Query: 3   MSGFFTLGSTD-------QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQ-- 62
           M+GFF LG  D       Q+H Q D +  +Q    + L+ YK          E+W PQ  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQD-KSNYLYLYKDEIYNNNKGFEIWPPQYF 60

Query: 63  QHQQHQQQSLFQTR-----------------SHNNNNNLYSGESSSRSGNLMMISSGSGG 122
           Q Q+HQQQ   Q                   S NNNNN       SRS    ++S    G
Sbjct: 61  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNN------RSRSLYFNVVSDHEPG 120

Query: 123 -------GGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKL 182
                  GG++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+R  +L
Sbjct: 121 GFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQL 180

Query: 183 AALQTH--PKRHT------------DYN------------------IPTTNTSGLEIG-N 242
           A+LQ H    R T            D N                  +   + SGLE+  +
Sbjct: 181 ASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQH 240

Query: 243 FPAELNSPAVFRCVRLSS-TDDTDDQ-YAYQTAVNIGGHVFKGILYDQGPENNYLPGETS 284
            P E+NSPA+FRCVR+SS  +D DDQ YAYQTAVNIGGH+FKGILYDQGPE+        
Sbjct: 241 LPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------- 300

[Close]

BLAST of Carg16076 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.2e-49
Identity = 143/349 (40.97%), Postives = 185/349 (53.01%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQQ 60

Query: 63  QQQ-------SLFQTRSHNNNNNLYSGESSSRSGNLMMIS------SGSGG------GGI 122
           QQQ       +L+      +  N+ +  S++RS    ++S      S +GG      G +
Sbjct: 61  QQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGNM 120

Query: 123 SCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRH 182
           +CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR 
Sbjct: 121 NCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KRI 180

Query: 183 TDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFRC 242
            D N                              +   ++SGLE  + P E++SPAVFRC
Sbjct: 181 RDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRC 240

Query: 243 VRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------LPGETSSGGGGGLQP 283
           +R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      L GETS      L  
Sbjct: 241 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMD 300

[Close]

BLAST of Carg16076 vs. ExPASy TrEMBL
Match: A0A6J1HH22 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111463406 PE=3 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.9e-154
Identity = 278/285 (97.54%), Postives = 278/285 (97.54%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP   QQHQQQSLFQ 
Sbjct: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQP---QQHQQQSLFQA 60

Query: 61  RSH--NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR 120
           RSH  NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR
Sbjct: 61  RSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTR 120

Query: 121 GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP 180
           GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP
Sbjct: 121 GFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSP 180

Query: 181 AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL 240
           AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL
Sbjct: 181 AVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPL 240

Query: 241 NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 NFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 282

[Close]

BLAST of Carg16076 vs. ExPASy TrEMBL
Match: A0A6J1KUP8 (protein SHI RELATED SEQUENCE 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497365 PE=3 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.5e-153
Identity = 277/287 (96.52%), Postives = 279/287 (97.21%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60

Query: 61  RSH----NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCN 120
           RSH    NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRSCCN
Sbjct: 61  RSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRSCCN 120

Query: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELN 180
           TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTSGLEIGNFPAELN
Sbjct: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSGLEIGNFPAELN 180

Query: 181 SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQ 240
           SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSS GGGGLQ
Sbjct: 181 SPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSGGGGLQ 240

Query: 241 PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 PLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 286

[Close]

BLAST of Carg16076 vs. ExPASy TrEMBL
Match: A0A6J1KY02 (protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497365 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.8e-151
Identity = 277/292 (94.86%), Postives = 279/292 (95.55%), Query Frame = 0


Query: 1   MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60
           MSMSGFFTLGSTDQEHQQ DTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT
Sbjct: 1   MSMSGFFTLGSTDQEHQQTDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQQSLFQT 60

Query: 61  RSH----NNNNNLYSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCN 120
           RSH    NNNNNLYS ESSSRSGNLMMISSGSGGGGISCQDCGNQAK+DCTHMRCRSCCN
Sbjct: 61  RSHNNNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKRDCTHMRCRSCCN 120

Query: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTS-----GLEIGNF 180
           TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD NIPTTNTS     GLEIGNF
Sbjct: 121 TRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTD-NIPTTNTSVTLNLGLEIGNF 180

Query: 181 PAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYLPGETSSGG 240
           PAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY+PGETSS G
Sbjct: 181 PAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSSG 240

Query: 241 GGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 284
           GGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS
Sbjct: 241 GGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 291

[Close]

BLAST of Carg16076 vs. ExPASy TrEMBL
Match: A0A0A0KGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.7e-109
Identity = 231/331 (69.79%), Postives = 249/331 (75.23%), Query Frame = 0


Query: 3   MSGFFTL-GSTDQEHQQPDTNRPNQTL--PPD-TLFWYKPGSVELWQPQQHQQ----HQQ 62
           MSGFFTL G      ++ + NRPNQ +  PPD +LFWYK G+VELWQ QQ QQ    HQ+
Sbjct: 1   MSGFFTLGGGGGGRDEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQQQHHHHHQE 60

Query: 63  QSLFQTRSHNNNNNL---------YSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKD 122
           Q LFQT+S                 S ESSSRSGN MMISSGSGGGGISCQDCGNQAKKD
Sbjct: 61  QPLFQTQSRTTTTTTPYSAPLAVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKD 120

Query: 123 CTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTH---------------- 182
           C+HMRCR+CC +RGF C+THVKSTWVPAAKRR+RQ KLAALQTH                
Sbjct: 121 CSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHHHQQQLQLHGGDN 180

Query: 183 -PKRHTDYN--------IPT-TNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQ 242
            PKRH DYN        IPT  NTSGLEIGNFPAELNSPAVFRCVR+SS DDTDDQYAYQ
Sbjct: 181 NPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQ 240

Query: 243 TAVNIGGHVFKGILYDQGPENNYL-PGETSSGGGG---GLQPLNFIAGAADA---NAASS 284
           TAVNIGGHVFKGILYDQGPENNY+ PGETSSGGGG   G+QPLNFIAGAADA   +  S+
Sbjct: 241 TAVNIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFIAGAADATTGSGGST 300

[Close]

BLAST of Carg16076 vs. ExPASy TrEMBL
Match: A0A5A7SN81 (Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001580 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.4e-109
Identity = 228/328 (69.51%), Postives = 246/328 (75.00%), Query Frame = 0


Query: 3   MSGFFTL-GSTDQEHQQPDTNRPNQTL--PPD-TLFWYKPGSVELWQPQQ--HQQHQQQS 62
           MSGFFTL G      ++ + NRPNQ +  PPD +LFWYK G+VELWQ QQ  H  HQ+Q 
Sbjct: 1   MSGFFTLGGGGGGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQHHHHHQEQP 60

Query: 63  LFQTRSHNNNNNL---------YSGESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCT 122
           LFQT+S                 S ESSSRSGN MMISSGSGGGGISCQDCGNQAKKDC+
Sbjct: 61  LFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCS 120

Query: 123 HMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTH----------------PK 182
           HMRCR+CC +RGF C+THVKSTWVPAAKRR+RQ KLAALQTH                PK
Sbjct: 121 HMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQLHGGDNNPK 180

Query: 183 RHTDYN--------IPT-TNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAV 242
           RH DYN        IPT  NTSGLEIGNFPAELNSPAVFRCVR+SS DDTDDQYAYQTAV
Sbjct: 181 RHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTAV 240

Query: 243 NIGGHVFKGILYDQGPENNYL-PGETSSGGGG---GLQPLNFIAGAAD---ANAASSAAL 284
           NIGGHVFKGILYDQGPENNY+ PGETSSGGGG   G+QPLNFI GAAD    +  S+AAL
Sbjct: 241 NIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFITGAADTTTGSGGSTAAL 300

[Close]

BLAST of Carg16076 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-67
Identity = 168/375 (44.80%), Postives = 217/375 (57.87%), Query Frame = 0


Query: 3   MSGFFTL---------GSTDQEHQQPDTNRPNQTLPP--DTLFWYKP------------- 62
           M+GFF+L         G  +QE  + +TN P    PP  +   WY+              
Sbjct: 1   MAGFFSLDGGGGGGGGGGNNQEDHRSNTNPP----PPVSEAWLWYRNPNVNANANTNVNA 60

Query: 63  ----------GSVELWQPQ-------QHQQHQQQ-SLFQTRS------HNNNNNLYSGES 122
                     G++ELWQ         QHQQHQQ+  L+ + +       N+N    SGE+
Sbjct: 61  NAPSSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGET 120

Query: 123 SS----RSGNLMMI---SSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVK 182
           S+    R+  +MMI    SG G GG+SCQDCGNQAKKDC+HMRCR+CC +RGF C THV+
Sbjct: 121 STAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVR 180

Query: 183 STWVPAAKRRQRQQKLAALQTH---------PKRHTDYNIPTTNT----------SGLEI 242
           STWVPAAKRR+RQQ+LA +Q           PKRH + N+P T++          SGLE+
Sbjct: 181 STWVPAAKRRERQQQLATVQPQTQLPRGESVPKRHRE-NLPATSSSLVCTRIPSHSGLEV 240

Query: 243 GNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPEN------NY 284
           GNFPAE++S AVFRCVR+SS +D ++++AYQTAV+IGGH+FKGILYD GP +      N 
Sbjct: 241 GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNV 300

[Close]

BLAST of Carg16076 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 234.6 bits (597), Expect = 1.0e-61
Identity = 150/338 (44.38%), Postives = 196/338 (57.99%), Query Frame = 0


Query: 3   MSGFFTL----GSTDQEHQQPDTNRPNQTLPPDTLFWYKP--------------GSVELW 62
           M+GFF+L    G    ++ + +TN P+ +     L+   P              G++ELW
Sbjct: 1   MAGFFSLGHGGGGNTPDNHRTNTNNPSSSGTESWLWCRNPNSNADGGEAGPSYKGTLELW 60

Query: 63  QPQQHQ----QHQQQSLFQTRSHNNNNNLYSGESS-----SRSGNLMMISSGSGGGGISC 122
           Q   +Q    Q QQQ   +   + +   L  G S+     +  G LMM+ SGSG GG SC
Sbjct: 61  QHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSC 120

Query: 123 QDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQ-------T 182
           QDCGNQ+KKDC+HMRCR+CC +RG  C THVKSTWVPAAKRR+RQQ+L+  Q       +
Sbjct: 121 QDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGS 180

Query: 183 HPKRHTD-----------YNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYA 242
            PKR  +             IP+ NTSGLE+GNFP E++S AVFRCVR+SS DD +++YA
Sbjct: 181 VPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYA 240

Query: 243 YQTAVNIGGHVFKGILYDQGPENNYLPGETSSGGGGGLQPLNFIAGAADANAAS------ 284
           Y+TAV+IGGHVFKG+LYDQGP          S  GGG QPLN I     A+++S      
Sbjct: 241 YKTAVSIGGHVFKGVLYDQGPAER-------SSSGGGSQPLNLITAGPSASSSSPNVSCN 300

[Close]

BLAST of Carg16076 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-54
Identity = 157/365 (43.01%), Postives = 187/365 (51.23%), Query Frame = 0


Query: 3   MSGFFTLGSTD-------QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQ-- 62
           M+GFF LG  D       Q+H Q D +  +Q    + L+ YK          E+W PQ  
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQD-KSNYLYLYKDEIYNNNKGFEIWPPQYF 60

Query: 63  QHQQHQQQSLFQTR-----------------SHNNNNNLYSGESSSRSGNLMMISSGSGG 122
           Q Q+HQQQ   Q                   S NNNNN       SRS    ++S    G
Sbjct: 61  QQQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNN------RSRSLYFNVVSDHEPG 120

Query: 123 -------GGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKL 182
                  GG++CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWVPAAKRR+R  +L
Sbjct: 121 GFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQL 180

Query: 183 AALQTH--PKRHT------------DYN------------------IPTTNTSGLEIG-N 242
           A+LQ H    R T            D N                  +   + SGLE+  +
Sbjct: 181 ASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQH 240

Query: 243 FPAELNSPAVFRCVRLSS-TDDTDDQ-YAYQTAVNIGGHVFKGILYDQGPENNYLPGETS 284
            P E+NSPA+FRCVR+SS  +D DDQ YAYQTAVNIGGH+FKGILYDQGPE+        
Sbjct: 241 LPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQ------- 300

[Close]

BLAST of Carg16076 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-50
Identity = 143/349 (40.97%), Postives = 185/349 (53.01%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQQ 60

Query: 63  QQQ-------SLFQTRSHNNNNNLYSGESSSRSGNLMMIS------SGSGG------GGI 122
           QQQ       +L+      +  N+ +  S++RS    ++S      S +GG      G +
Sbjct: 61  QQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGNM 120

Query: 123 SCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRH 182
           +CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR 
Sbjct: 121 NCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KRI 180

Query: 183 TDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFRC 242
            D N                              +   ++SGLE  + P E++SPAVFRC
Sbjct: 181 RDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRC 240

Query: 243 VRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------LPGETSSGGGGGLQP 283
           +R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      L GETS      L  
Sbjct: 241 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMD 300

[Close]

BLAST of Carg16076 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-50
Identity = 143/349 (40.97%), Postives = 185/349 (53.01%), Query Frame = 0


Query: 3   MSGFFTLGSTD----QEHQQPDTNRPNQTLPPDTLFWYKP------GSVELWQPQQHQQH 62
           M+G F LG  D      HQ+ D N        + L+ YK          E++ PQ  QQ 
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSN---NYLYLYKDEIYNNNKGFEIFPPQYFQQQ 60

Query: 63  QQQ-------SLFQTRSHNNNNNLYSGESSSRSGNLMMIS------SGSGG------GGI 122
           QQQ       +L+      +  N+ +  S++RS    ++S      S +GG      G +
Sbjct: 61  QQQNHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQGNM 120

Query: 123 SCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRH 182
           +CQDCGNQAKKDC HMRCR+CC +RGF CQTHVKSTWV AAKRR+RQ +LA L    KR 
Sbjct: 121 NCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPA--KRI 180

Query: 183 TDYN------------------------------IPTTNTSGLEIGNFPAELNSPAVFRC 242
            D N                              +   ++SGLE  + P E++SPAVFRC
Sbjct: 181 RDANSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRC 240

Query: 243 VRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNY------LPGETSSGGGGGLQP 283
           +R+SS DD D++YAYQTAV+IGGHVFKGILYDQGP +++      L GETS      L  
Sbjct: 241 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMD 300

The following BLAST results are available for this feature:

BLAST of Carg16076 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026763.1	4.4e-160	100.00	Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6594796.1	6.3e-159	99.65	Protein SHI RELATED SEQUENCE 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023518391.1	8.5e-156	97.57	protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963105.1	8.0e-154	97.54	protein SHI RELATED SEQUENCE 1-like [Cucurbita moschata]	[more]
XP_023003919.1	5.2e-153	96.52	protein SHI RELATED SEQUENCE 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg16076 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD40	1.1e-65	44.80	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	1.4e-60	44.38	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
K4B6C9	3.8e-58	44.26	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9LQZ5	1.7e-53	43.01	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9FXH7	4.2e-49	40.97	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of Carg16076 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH22	3.9e-154	97.54	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC11146340...	[more]
A0A6J1KUP8	2.5e-153	96.52	protein SHI RELATED SEQUENCE 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1KY02	1.8e-151	94.86	protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KGL4	1.7e-109	69.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504650 PE=3 SV=1	[more]
A0A5A7SN81	8.4e-109	69.51	Protein SHI RELATED SEQUENCE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Carg16076 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	7.9e-67	44.80	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	1.0e-61	44.38	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	1.2e-54	43.01	SHI-related sequence 5	[more]
AT1G19790.1	3.0e-50	40.97	SHI-related sequence 7	[more]
AT1G19790.2	3.0e-50	40.97	SHI-related sequence 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 94..136 e-value: 1.5E-24 score: 83.7
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 171..218 e-value: 2.5E-27 score: 92.6
None	No IPR available	PFAM	PF05142	DUF702	coord: 92..219 e-value: 5.1E-54 score: 182.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 3..279
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 3..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16076-RA	Carg16076-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding