Carg16011 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16011
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein TAPETUM DETERMINANT 1-like
Location	Carg_Chr07: 2355492 .. 2355941 (-)
RNA-Seq Expression	Carg16011
Synteny	Carg16011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTCTGCCCAGCTTATCGCTGCGCTTCTCTTCGTCTCTTTTCTTCCCAAAGGTATAAATTTAAATTTTTATGGTTTATTTATCTTTTTCTTTCATTATTCGGATATTTTTTAATTATTATTTATTCTTCCAGGAAATTTTCAGTGTTTCTTGAGCAACATAACAATCACTCAGAGTATGACTGGATTTCAAATTCATGGAATGACAGAATGGAATACAACCGTAAGTAACATCTGTTTGTGTTCTCAATCAGAAGTGAAACTTGATTGCAGAGGATTTCAAACTACAGAAAGCATCGATCCTTTGATATTAGCCATTACCGACACTGAATGCTTAGTCAACAATGGACTCCCAATCTTCAACTCAACCCCTATCACCTTCACTTATGCACAAAACCCTCAATTCAACTTCAAACCAATCTCTTCTCAGATCGCTTGTTCTTAA

mRNA sequence

ATGGCTCCCTCTGCCCAGCTTATCGCTGCGCTTCTCTTCGTCTCTTTTCTTCCCAAAGGAAATTTTCAGTGTTTCTTGAGCAACATAACAATCACTCAGAGTATGACTGGATTTCAAATTCATGGAATGACAGAATGGAATACAACCGTAAGTAACATCTGTTTGTGTTCTCAATCAGAAGTGAAACTTGATTGCAGAGGATTTCAAACTACAGAAAGCATCGATCCTTTGATATTAGCCATTACCGACACTGAATGCTTAGTCAACAATGGACTCCCAATCTTCAACTCAACCCCTATCACCTTCACTTATGCACAAAACCCTCAATTCAACTTCAAACCAATCTCTTCTCAGATCGCTTGTTCTTAA

Coding sequence (CDS)

ATGGCTCCCTCTGCCCAGCTTATCGCTGCGCTTCTCTTCGTCTCTTTTCTTCCCAAAGGAAATTTTCAGTGTTTCTTGAGCAACATAACAATCACTCAGAGTATGACTGGATTTCAAATTCATGGAATGACAGAATGGAATACAACCGTAAGTAACATCTGTTTGTGTTCTCAATCAGAAGTGAAACTTGATTGCAGAGGATTTCAAACTACAGAAAGCATCGATCCTTTGATATTAGCCATTACCGACACTGAATGCTTAGTCAACAATGGACTCCCAATCTTCAACTCAACCCCTATCACCTTCACTTATGCACAAAACCCTCAATTCAACTTCAAACCAATCTCTTCTCAGATCGCTTGTTCTTAA

Protein sequence

MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIACS

Homology

[Close]

BLAST of Carg16011 vs. NCBI nr
Match: KAG7026827.1 (hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.4 bits (638), Expect = 8.1e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE
Sbjct: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA
Sbjct: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. NCBI nr
Match: XP_022962948.1 (uncharacterized protein At1g05835-like [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 3.9e-57
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAPSA+L AALLFVSFL K N QCFLSNITI QSMTGFQIHGMTEWNTTVSN CLCSQSE
Sbjct: 1   MAPSAKLFAALLFVSFLSKENSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDCRGFQTT+SIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA
Sbjct: 61  VKLDCRGFQTTKSIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. NCBI nr
Match: XP_023518832.1 (uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAP A L AALLFVS L KGNFQC  ++I I+Q MTGFQIHGMTEWN T+SN CLCSQSE
Sbjct: 1   MAPFANLFAALLFVSLLCKGNFQCVPNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDCRGFQTT+S+DP ILA+TDTECLVNNGLPIF S P+ FTYAQ+P+F+FK ISSQIA
Sbjct: 61  VKLDCRGFQTTKSVDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. NCBI nr
Match: KAG7026828.1 (Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 6.9e-46
Identity = 93/122 (76.23%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAP  +L AALLFVS L KGN QC  ++I I+Q MTGFQIHGMTEWN T+SN CLCSQSE
Sbjct: 1   MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDC+GFQTT+SIDP ILA+TDTECLVNNGLPIF S P+ FTYAQ+P+F+FK ISSQIA
Sbjct: 61  VKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. NCBI nr
Match: XP_038881121.1 (uncharacterized protein At1g05835-like [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MA   +L+ ALL +S +  GN QC L+NITI+Q MTGFQIHGMTEW  T+SN C CSQSE
Sbjct: 1   MAIFVKLVTALLVLSLVSTGNCQCILNNITISQRMTGFQIHGMTEWKVTISNNCPCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VK+DC+GFQTTESIDP ILA+ DTECLVNNGLPIFNS PITF+YAQ+PQFNFKPISSQI+
Sbjct: 61  VKIDCKGFQTTESIDPSILAVFDTECLVNNGLPIFNSNPITFSYAQDPQFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 45  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPI 104
           ++   V N C +C    ++L C+GF  +  +DP  L +  +    C+VN+GLP+     +
Sbjct: 47  KFRVEVMNKCPMCPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 106

Query: 105 TFTYAQNPQFNFKPISSQIAC 122
           +F Y+   QF  +P+S    C
Sbjct: 107 SFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Carg16011 vs. ExPASy TrEMBL
Match: A0A6J1HGA0 (uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC111463301 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAPSA+L AALLFVSFL K N QCFLSNITI QSMTGFQIHGMTEWNTTVSN CLCSQSE
Sbjct: 1   MAPSAKLFAALLFVSFLSKENSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDCRGFQTT+SIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA
Sbjct: 61  VKLDCRGFQTTKSIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. ExPASy TrEMBL
Match: A0A6J1KP98 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MAP A+L AALLFVS L KGN QC  ++I I Q+M+GFQIHGMTEWN T+SNICLCSQSE
Sbjct: 1   MAPFAKLFAALLFVSLLHKGNCQCVSNDIAIRQTMSGFQIHGMTEWNVTISNICLCSQSE 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           VKLDCRGFQTT+SIDP +LA+TD+ECLVNNGLPIF S  ITFTYA +P+F+FK ISSQI 
Sbjct: 61  VKLDCRGFQTTKSIDPSVLAVTDSECLVNNGLPIFKSNSITFTYAHDPKFDFKLISSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. ExPASy TrEMBL
Match: A0A5D3CMA8 (Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002630 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.1e-44
Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MA S +L+AALL +SF+  GN QC L+NITI+Q MTGFQIHGMTEW+ T++N C+CSQS+
Sbjct: 1   MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           +KLDC+GF TT SIDP IL+I+D ECLVNNG PIFNS PITF YAQ P+FNFKPISSQI+
Sbjct: 61  LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. ExPASy TrEMBL
Match: A0A1S3B1L8 (protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.1e-44
Identity = 87/122 (71.31%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSE 60
           MA S +L+AALL +SF+  GN QC L+NITI+Q MTGFQIHGMTEW+ T++N C+CSQS+
Sbjct: 1   MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60

Query: 61  VKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
           +KLDC+GF TT SIDP IL+I+D ECLVNNG PIFNS PITF YAQ P+FNFKPISSQI+
Sbjct: 61  LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of Carg16011 vs. ExPASy TrEMBL
Match: A0A0A0KLZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 84/117 (71.79%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 6   QLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDC 65
           +L+AALL +S +  GN QCFL+NI I+QSMTGFQIHGMTEW  T++N C+CSQS++KLDC
Sbjct: 6   KLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDC 65

Query: 66  RGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIACS 123
           +GF TT SIDP ILAI+D+ECLVNNG PIFNS PITF YAQ+P+FNFKP+SSQI+CS
Sbjct: 66  KGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]

BLAST of Carg16011 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 45  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPI 104
           ++   V N C +C    ++L C+GF  +  +DP  L +  +    C+VN+GLP+     +
Sbjct: 47  KFRVEVMNKCPMCPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 106

Query: 105 TFTYAQNPQFNFKPISSQIAC 122
           +F Y+   QF  +P+S    C
Sbjct: 107 SFNYSNTHQFALRPLSWSFQC 126

[Close]

BLAST of Carg16011 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 24/86 (27.91%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 23  QCFLSNITITQSMTGFQIHGMTEWNTTVSNICL--CSQSEVKLDCRGFQTTESIDPLIL- 82
           +C  ++I + Q++T    +G+  +   ++N C+  C  S + ++C  F + + I+P +  
Sbjct: 76  KCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFK 135

Query: 83  AITDTECLVNNGLPIFNSTPITFTYA 106
            I   +CLVNNG P+   + ++F YA
Sbjct: 136 RIHYDDCLVNNGKPLPFGSTLSFHYA 161

The following BLAST results are available for this feature:

BLAST of Carg16011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026827.1	8.1e-63	100.00	hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022962948.1	3.9e-57	93.44	uncharacterized protein At1g05835-like [Cucurbita moschata]	[more]
XP_023518832.1	2.2e-47	77.87	uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo]	[more]
KAG7026828.1	6.9e-46	76.23	Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_038881121.1	2.0e-45	74.59	uncharacterized protein At1g05835-like [Benincasa hispida]	[more]

BLAST of Carg16011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MS78	5.2e-04	29.63	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Carg16011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGA0	1.9e-57	93.44	uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KP98	1.7e-45	75.41	protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 P...	[more]
A0A5D3CMA8	9.1e-44	71.31	Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B1L8	9.1e-44	71.31	protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 ...	[more]
A0A0A0KLZ6	1.0e-42	71.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1	[more]

BLAST of Carg16011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05835.1	3.7e-05	29.63	PHD finger protein	[more]
AT4G24972.1	8.3e-05	27.91	tapetum determinant 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16011-RA	Carg16011-RA	mRNA