Carg15950 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15950
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like
Location	Carg_Chr08: 7301309 .. 7302796 (-)
RNA-Seq Expression	Carg15950
Synteny	Carg15950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGCAGTCGATGCTGCTGGAGATCCGATTCCTACATCAGCGGTGTTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGAAAAAGGCCAACAAGTTACTCGCTGCGTCCTCTCCCTGTAAGTGAATTACCTCTTTGTTGTTTTCATAGCCGAAGTTCGAATTCGCCACTTTTCATCGGCTTTGGTTTATGTTTTCCGGAAATTTGCTTTAGTTATCATATGATCGTCTTCTAATCTGCAAGCAAATACATGATTAGGTAATACACTGCTTTAGCAATCATATGGTCGTTATCCGATCCGCTAGAGTAGAAGACTAGGAAGAGTAAGGGTTGTTTCTTAGACTTGATATAAAAATTATTAGTGCCGGTGCTGATAAGATTTTACGTTGATAATCTTTTATCTGACTAAATTTATGGTGAGCATGGTAGTCATGATCCGAAATCACCTGTTCTTAATTAAGCACCTTTAGCATAGGTGCACGGTGGAAATATTGGATTGTGGAGGTCTTCCAGATTTTGAAGGGTTGCAAGCATTCATGATTTAGATCTCTTTAGTGGCATTGAAGTGGTAGTCTCACAGTTCATGGTTCAGCATTTTTAATCTTTGGATGAGGAATTCAATGAATTCAACTTTCGGTTGGTTGAGCTGGAATTTGCTAGGTTATGCTAATTTGCAGTTTCAAGAGGCTGGATAGTTGATTTTTCAATTTTTTTTTTTTTTTTTTGAAGTCAAAACCTCTATCTAGAAAGCTTTTATGGCTAAGGCTTGTTATCATTAATTATTACAATTTTTTTTTGTTGTACATTGGGTTTTTACAAATGACACGAAGAGTAGTTTTCTTCATCTTTTACTTGGTCCCCTATATTCTTCAAGATTACGTTTGTTATGGGTTAATAACGTCGAAGCTATCGGTTCTGAGTTTTGGTTGGAGTGCTTTCAAAGGATTTTTTAGAATAAGCAACAATGTTGGTTTGAGCGGCTTGAGTTTGCCAGATTGAAAGCTTCACAGTGTTGTTCTCTGTCTAAATTTATTGGTCATTTCTCTTTTCAGAATATTTGCTTGAATAGGGATGGTTTCATATTATATAGTTTGTTACTTTTCATTTTATCGATCAAGAGTTTCCCATCTTGTTTGAAAAAAAATTGTGAATACAAGTGAATGATATTAGAAATATCATTGATGAATGAGCAATTTTCATTTCACAATATTTAGAGATAATAGCTTTGTTTAGTAAACATTAGTACTTGTTAAATAATTAACCTAGAGGCTGCTTCTATTTGCAGGCTTAAAGATCTTCATCAAAGGTGCACAAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACAAATGAGTTTGATTTATGTCGCAAAGAGCAGGAAGCATTCGAGAAAGCATGTCCCTTGGAATGA

mRNA sequence

ATGGCGACTGCAGTCGATGCTGCTGGAGATCCGATTCCTACATCAGCGGTGTTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGAAAAAGGCCAACAAGTTACTCGCTGCGTCCTCTCCCTGCTTAAAGATCTTCATCAAAGGTGCACAAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACAAATGAGTTTGATTTATGTCGCAAAGAGCAGGAAGCATTCGAGAAAGCATGTCCCTTGGAATGA

Coding sequence (CDS)

ATGGCGACTGCAGTCGATGCTGCTGGAGATCCGATTCCTACATCAGCGGTGTTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGAAAAAGGCCAACAAGTTACTCGCTGCGTCCTCTCCCTGCTTAAAGATCTTCATCAAAGGTGCACAAAAGAGATGGATGCTTATGTCGGTTGCATGTACTACAATACAAATGAGTTTGATTTATGTCGCAAAGAGCAGGAAGCATTCGAGAAAGCATGTCCCTTGGAATGA

Protein sequence

MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE

Homology

[Close]

BLAST of Carg15950 vs. NCBI nr
Match: KAG7026281.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV
Sbjct: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 4.6e-54
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-53
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. NCBI nr
Match: XP_038893587.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AV+AAGDPIPTSAVLMSSSKHIAN CRSENVAYLQCK+KDPNPEKCLEKG QVTRCV
Sbjct: 1   MASAVNAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKQKDPNPEKCLEKGHQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYY+TNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYHTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. NCBI nr
Match: XP_022138355.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg15950 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-43
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           M++AVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCL+KG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of Carg15950 vs. ExPASy Swiss-Prot
Match: Q9SQT4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 4   AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSL 63
           AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCLEKG+ VTRCVL L
Sbjct: 6   AVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGL 65

Query: 64  LKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 66  LKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of Carg15950 vs. ExPASy TrEMBL
Match: A0A6J1KIR7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111494823 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. ExPASy TrEMBL
Match: A0A6J1EWD6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111436739 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. ExPASy TrEMBL
Match: A0A6J1KXR2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111499155 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. ExPASy TrEMBL
Match: A0A6J1H2X4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111459990 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTK+MDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE
Sbjct: 61  LSLLKDLHQRCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 106

[Close]

BLAST of Carg15950 vs. ExPASy TrEMBL
Match: A0A6J1C988 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Momordica charantia OX=3673 GN=LOC111009549 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           MA+AVDAAG+PIPTSAVLMSS+KHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1   MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEK CPLE
Sbjct: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKGCPLE 106

[Close]

BLAST of Carg15950 vs. TAIR 10
Match: AT5G18800.1 (Cox19-like CHCH family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           M++AVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCL+KG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of Carg15950 vs. TAIR 10
Match: AT5G18800.2 (Cox19-like CHCH family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60
           M++AVDA G+PIPTSAVL +S+KHI   C  ENVA+L+CK+ DPNPEKCL+KG+ VTRCV
Sbjct: 1   MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61  LSLLKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           L LLKDLHQ+C KEMD YVGCMYY TNEFDLCRKEQEAFEK CPL+
Sbjct: 61  LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPLK 106

[Close]

BLAST of Carg15950 vs. TAIR 10
Match: AT3G06310.1 (Cox19-like CHCH family protein )

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-44
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 4   AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSL 63
           AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCLEKG+ VTRCVL L
Sbjct: 6   AVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGL 65

Query: 64  LKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 66  LKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of Carg15950 vs. TAIR 10
Match: AT3G06310.3 (Cox19-like CHCH family protein )

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-44
Identity = 79/103 (76.70%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 4   AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSL 63
           AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCLEKG+ VTRCVL L
Sbjct: 6   AVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGL 65

Query: 64  LKDLHQRCTKEMDAYVGCMYYNTNEFDLCRKEQEAFEKACPLE 107
           LKDLHQRC KEMDAYVGCMYY TNEF+LCRKEQEAFEK CPL+
Sbjct: 66  LKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPLK 108

[Close]

BLAST of Carg15950 vs. TAIR 10
Match: AT3G06310.2 (Cox19-like CHCH family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 4  AVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCVLSL 63
          AVD  G+PIPTSAVL +S+KHI   C  EN+A+L+CK+ DPNPEKCLEKG+ VTRCVL L
Sbjct: 6  AVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGL 65

The following BLAST results are available for this feature:

BLAST of Carg15950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026281.1	1.6e-54	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbi...	[more]
XP_022930219.1	4.6e-54	99.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022958837.1	2.3e-53	97.17	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_038893587.1	3.6e-51	94.34	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa h...	[more]
XP_022138355.1	3.6e-51	93.40	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charan...	[more]

BLAST of Carg15950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE7	1.7e-43	75.47	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
Q9SQT4	8.4e-43	76.70	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of Carg15950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIR7	2.2e-54	99.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1EWD6	2.2e-54	99.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1KXR2	1.1e-53	97.17	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1H2X4	1.1e-53	97.17	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1C988	1.8e-51	93.40	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Momordica char...	[more]

BLAST of Carg15950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18800.1	1.2e-44	75.47	Cox19-like CHCH family protein	[more]
AT5G18800.2	1.2e-44	75.47	Cox19-like CHCH family protein	[more]
AT3G06310.1	6.0e-44	76.70	Cox19-like CHCH family protein	[more]
AT3G06310.3	6.0e-44	76.70	Cox19-like CHCH family protein	[more]
AT3G06310.2	1.5e-18	68.33	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 71..104 e-value: 1.5E-10 score: 41.0
IPR016680	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..105
None	No IPR available	PANTHER	PTHR13344:SF2	CHCH-RELATED	coord: 1..105
None	No IPR available	PROSITE	PS51808	CHCH	coord: 26..67 score: 11.233427
None	No IPR available	PROSITE	PS51808	CHCH	coord: 68..106 score: 15.248014

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15950-RA	Carg15950-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I