Carg15930 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15930
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr08: 7182615 .. 7183315 (+)
RNA-Seq ExpressionCarg15930
SyntenyCarg15930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTTGGAGTTAAAGTAATGGAAGTTCTACCGATGGCAGGTTGTTGTTTGATTCGCGTTCTAAGCTGGATTCTGTATGTTGTAACATTATGTTGTGGGTATGTAAAACTTCGCGAATTGGACAATGCCCGCCAGTTGTTCGACAAAATGCCTGACAGAGGATGCGTCTCTTTCACCACCATGATTTTGGGTTTGTCACAAAATGATTGTTGGAGTGAAGTAATGGAAGTTCTCACACCACCATGATTTGAGTGTGGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGATTGTTCACATATGGGTGGGATTTGGAATTGCTGGATGCTCAATGCACTGGTCGTAAAGTTACATTTCGTTAGTCATGTTCTTATTTCAACGACTTTGCTGTACATGTATTGTGTTTGTCCAAGTTTAAAAGATGCCAGGAGATTGTTCCGTGCAATGTCAGTTCATAACGTCGCTTCGACGTGGAATGTGATATTAAAAGGTTACGTAAAAGCTGGCCTTGTTGATGAAGCAAGAGAGCTGTTTGAAAGTGTTATAGAAAGAGATGATTTCTTGGGCTACAATGATTGATGAGTATGTGCAAGTGAAACAGTTAAGGGAAGCTTTGATGATTATCGATTTGGCTTCTGCTTGTGGGCAGGCAGTTCCATTCTATTGTGGGTTTCTCAAAGAACATAATGATTGA

mRNA sequence

ATGATTGTTGGAGTTAAAGTAATGGAAGTTCTACCGATGGCAGGTTGTTGTTTGATTCGCGTTCTAAGCTGGATTCTGTATGTTGTAACATTATGTTGTGGGTATGTAAAACTTCGCGAATTGGACAATGCCCGCCAGTTGTTCGACAAAATGCCTGACAGAGGATGCGTCTCTTTCACCACCATGATTTTGGGTTTGTCACAAAATGATTGTTGGAGTGAATTCTCACACCACCATGATTTGAGTGTGGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGATTGTTCACATATGGGTGGGATTTGGAATTGCTGGATGCTCAATGCACTGGTCGTAAAGTTACATTTCGTTAGTCATGTTCTTATTTCAACGACTTTGCTGTACATGTATTGTGTTTGTCCAAGTTTAAAAGATGCCAGGAGATTGTTCCGTGCAATGTCAGTTCATAACGTCGCTTCGACGTGGAATGTGATATTAAAAGGTTACGTAAAAGCTGGCCTTGTTGATGAAGCAAGAGAGCTGTTTGAAAGTAAAGAGATGATTTCTTGGGCTACAATGATTGATGAGTATGTGCAAGTGAAACAGTTAAGGGAAGCTTTGATGATTATCGATTTGGCTTCTGCTTGTGGGCAGGCAGTTCCATTCTATTGTGGGTTTCTCAAAGAACATAATGATTGA

Coding sequence (CDS)

ATGATTGTTGGAGTTAAAGTAATGGAAGTTCTACCGATGGCAGGTTGTTGTTTGATTCGCGTTCTAAGCTGGATTCTGTATGTTGTAACATTATGTTGTGGGTATGTAAAACTTCGCGAATTGGACAATGCCCGCCAGTTGTTCGACAAAATGCCTGACAGAGGATGCGTCTCTTTCACCACCATGATTTTGGGTTTGTCACAAAATGATTGTTGGAGTGAATTCTCACACCACCATGATTTGAGTGTGGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGATTGTTCACATATGGGTGGGATTTGGAATTGCTGGATGCTCAATGCACTGGTCGTAAAGTTACATTTCGTTAGTCATGTTCTTATTTCAACGACTTTGCTGTACATGTATTGTGTTTGTCCAAGTTTAAAAGATGCCAGGAGATTGTTCCGTGCAATGTCAGTTCATAACGTCGCTTCGACGTGGAATGTGATATTAAAAGGTTACGTAAAAGCTGGCCTTGTTGATGAAGCAAGAGAGCTGTTTGAAAGTAAAGAGATGATTTCTTGGGCTACAATGATTGATGAGTATGTGCAAGTGAAACAGTTAAGGGAAGCTTTGATGATTATCGATTTGGCTTCTGCTTGTGGGCAGGCAGTTCCATTCTATTGTGGGTTTCTCAAAGAACATAATGATTGA

Protein sequence

MIVGVKVMEVLPMAGCCLIRVLSWILYVVTLCCGYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSEFSHHHDLSVAPNEVTMASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMSVHNVASTWNVILKGYVKAGLVDEARELFESKEMISWATMIDEYVQVKQLREALMIIDLASACGQAVPFYCGFLKEHND
Homology
BLAST of Carg15930 vs. NCBI nr
Match: XP_023006214.1 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita maxima])

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-65
Identity = 135/205 (65.85%), Postives = 156/205 (76.10%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NAR LFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARHLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC SLKDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+A ELF+    K++ISWATMID +VQVKQLREAL    
Sbjct: 255 VRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPEKDVISWATMIDGFVQVKQLREALSMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKSDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. NCBI nr
Match: XP_022959003.1 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-65
Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NARQLFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARQLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC SLKDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           + N  S WNV+LKGYVK+GLVD+A ELF+    +++ISWATMID +VQVKQLREAL    
Sbjct: 255 MRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPERDVISWATMIDGFVQVKQLREALSMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKSDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. NCBI nr
Match: KAG7013592.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 9.5e-65
Identity = 134/205 (65.37%), Postives = 155/205 (75.61%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NAR LFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARHLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC S KDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSSKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+A ELF+    K++ISWATMID +VQVKQLREAL    
Sbjct: 255 VRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPEKDVISWATMIDGFVQVKQLREALLMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKGDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. NCBI nr
Match: KAG6575019.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 9.5e-65
Identity = 134/205 (65.37%), Postives = 155/205 (75.61%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NAR LFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARHLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC S KDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSSKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+A ELF+    K++ISWATMID +VQVKQLREAL    
Sbjct: 255 VRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPEKDVISWATMIDGFVQVKQLREALLMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKGDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. NCBI nr
Match: XP_023548174.1 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-64
Identity = 133/205 (64.88%), Postives = 156/205 (76.10%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NARQLFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARQLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC SLKDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+ LVD+A ELF+    +++ISWATMID +V+VKQLREAL    
Sbjct: 255 VRNTVS-WNVMLKGYVKSDLVDKAIELFDRIPERDVISWATMIDGFVRVKQLREALLMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKSDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. ExPASy Swiss-Prot
Match: P0C8Q8 (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.1e-45
Identity = 93/186 (50.00%), Postives = 126/186 (67.74%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYV+ R L +A +LFD MP+R CVS+TT+I G +QN+ WSE    F    +L +  NEVT
Sbjct: 116 GYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVT 175

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +A+V+S CSH+GGIW+C ML +L +KL     V +ST LL+MYC+C  LKDAR+LF  M 
Sbjct: 176 LATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMP 235

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREALMIID 213
             N+  TWNV+L GY KAGL+++A ELF+    K+++SW TMID  ++  QL EAL+   
Sbjct: 236 ERNLV-TWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYT 295

BLAST of Carg15930 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-17
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSEFSHHHDLSVAPNEVTMASV 93
           GYV+ R L  AR+LF+ MP+R   S+ TM+ G +QN C  +     D     N+V+  ++
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 94  MSDCSHMGGIWNCWMLNALVVKLHFVSHVLIS-TTLLYMYCVCPSLKDARRLFRAMSVHN 153
           +S       + N  M  A ++     +  L+S   LL  +     + +AR+ F +M+V +
Sbjct: 195 LS-----AYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 254

Query: 154 VASTWNVILKGYVKAGLVDEARELFES---KEMISWATMIDEYVQVKQLREALMIID 207
           V S WN I+ GY ++G +DEAR+LF+    +++ +W  M+  Y+Q + + EA  + D
Sbjct: 255 VVS-WNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

BLAST of Carg15930 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.9e-17
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0

Query: 7   VMEVLPMAGCCL-IRVLSWILYVVTLCCGYVKLRELDNARQLFDKMPDRGCVSFTTMILG 66
           +M +  + G CL    LS       L   Y KL E+++AR+LFD+ P++   S+  MI G
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 67  LSQN----DCWSEFSHHHDLSVAPNEVTMASVMSDCSHMGGIWNCWMLNALVVKLHFVSH 126
            +QN    D  S F        +PN VT+  ++S C+ +G +     ++ LV    F S 
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 127 VLISTTLLYMYCVCPSLKDARRLFRAMSVHNVASTWNVILKGYVKAGLVDEARELF 178
           + +ST L+ MY  C S+ +ARRLF  M+  N   TWN ++ GY   G   EA  +F
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHGQGQEALNIF 509

BLAST of Carg15930 vs. ExPASy Swiss-Prot
Match: Q9ZUT4 (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-17
Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 40  ELDNARQLFDKMPDRGCVSFTTMILGLSQ----NDCWSEFSHHHDLSVAPNEVTMASVMS 99
           E++NA ++F++MP+R  VS+T MI G +Q    + C   +S     +  PN+ T  +++S
Sbjct: 170 EVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLS 229

Query: 100 DCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMSVHNVAS 159
            C+  G +     ++   + +   S++ IS +L+ MYC C  LKDA R+F   S  +V S
Sbjct: 230 ACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVS 289

Query: 160 TWNVILKGYVKAGLVDEARELFE 179
            WN ++ GY + GL  +A ELFE
Sbjct: 290 -WNSMIAGYAQHGLAMQAIELFE 311

BLAST of Carg15930 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.5e-16
Identity = 59/201 (29.35%), Postives = 99/201 (49.25%), Query Frame = 0

Query: 31  LCCGYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE-FSHHHDL---SVAPN 90
           +  GY+K  EL++A+++F +MP R  VS++TMI+G++ N  ++E F +  +L    ++PN
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 268

Query: 91  EVTMASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFR 150
           EV++  V+S CS  G      +L+  V K  +   V ++  L+ MY  C ++  AR +F 
Sbjct: 269 EVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFE 328

Query: 151 AMSVHNVASTWNVILKGYVKAGLVDEARELFESKEMISWATMIDEYVQVKQLREALMIID 210
            M       +W  ++ G    G  +EA  LF   EM ++    D           +  I 
Sbjct: 329 GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF--NEMTAYGVTPD----------GISFIS 388

Query: 211 LASACGQAVPFYCGFLKEHND 228
           L  AC  A     G ++E  D
Sbjct: 389 LLHACSHA-----GLIEEGED 392

BLAST of Carg15930 vs. ExPASy TrEMBL
Match: A0A6J1L1I9 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111499011 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 9.3e-66
Identity = 135/205 (65.85%), Postives = 156/205 (76.10%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NAR LFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARHLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC SLKDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+A ELF+    K++ISWATMID +VQVKQLREAL    
Sbjct: 255 VRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPEKDVISWATMIDGFVQVKQLREALSMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKSDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. ExPASy TrEMBL
Match: A0A6J1H4P4 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111460125 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.2e-65
Identity = 134/205 (65.37%), Postives = 157/205 (76.59%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYVKLR+L+NARQLFDKMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 135 GYVKLRQLENARQLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVT 194

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +ASVMS CSH+GGIWNC ML+ALV+KLHF+  VLIST LL+MYCVC SLKDARRLF  M 
Sbjct: 195 IASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMP 254

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           + N  S WNV+LKGYVK+GLVD+A ELF+    +++ISWATMID +VQVKQLREAL    
Sbjct: 255 MRNTVS-WNVMLKGYVKSGLVDKAIELFDRIPERDVISWATMIDGFVQVKQLREALSMFS 314

Query: 214 ------------MIIDLASACGQAV 216
                       MI+DL SACGQ++
Sbjct: 315 AMRKSDLHPNEVMIVDLLSACGQSI 338

BLAST of Carg15930 vs. ExPASy TrEMBL
Match: A0A1S4E227 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497919 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.5e-63
Identity = 131/205 (63.90%), Postives = 154/205 (75.12%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GY+KLR+L+NARQLF KMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 136 GYIKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVT 195

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           MASVMS CSH+GGIWNC ML+ALV+KLHF   VLIST LL+MYCV  SLKDA+RLF  M 
Sbjct: 196 MASVMSACSHIGGIWNCCMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDAKRLFNEMP 255

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+ARELFE    +++ SWATMID +VQ+K+LREAL    
Sbjct: 256 VRNTVS-WNVMLKGYVKSGLVDQARELFERIPERDVFSWATMIDGFVQMKRLREALLLYS 315

Query: 214 ------------MIIDLASACGQAV 216
                       +I+DL SACGQ+V
Sbjct: 316 AMRKSDFHPNEVLIVDLLSACGQSV 339

BLAST of Carg15930 vs. ExPASy TrEMBL
Match: A0A1S4E229 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497919 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.5e-63
Identity = 131/205 (63.90%), Postives = 154/205 (75.12%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GY+KLR+L+NARQLF KMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 113 GYIKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVT 172

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           MASVMS CSH+GGIWNC ML+ALV+KLHF   VLIST LL+MYCV  SLKDA+RLF  M 
Sbjct: 173 MASVMSACSHIGGIWNCCMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDAKRLFNEMP 232

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+ARELFE    +++ SWATMID +VQ+K+LREAL    
Sbjct: 233 VRNTVS-WNVMLKGYVKSGLVDQARELFERIPERDVFSWATMIDGFVQMKRLREALLLYS 292

Query: 214 ------------MIIDLASACGQAV 216
                       +I+DL SACGQ+V
Sbjct: 293 AMRKSDFHPNEVLIVDLLSACGQSV 316

BLAST of Carg15930 vs. ExPASy TrEMBL
Match: A0A1S3C877 (pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497919 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.5e-63
Identity = 131/205 (63.90%), Postives = 154/205 (75.12%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GY+KLR+L+NARQLF KMP+RGCVS+TTMILGL+QNDCW E    F       VAPNEVT
Sbjct: 136 GYIKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIEVFKDMRSAGVAPNEVT 195

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           MASVMS CSH+GGIWNC ML+ALV+KLHF   VLIST LL+MYCV  SLKDA+RLF  M 
Sbjct: 196 MASVMSACSHIGGIWNCCMLHALVIKLHFFGLVLISTNLLHMYCVFSSLKDAKRLFNEMP 255

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREAL---- 213
           V N  S WNV+LKGYVK+GLVD+ARELFE    +++ SWATMID +VQ+K+LREAL    
Sbjct: 256 VRNTVS-WNVMLKGYVKSGLVDQARELFERIPERDVFSWATMIDGFVQMKRLREALLLYS 315

Query: 214 ------------MIIDLASACGQAV 216
                       +I+DL SACGQ+V
Sbjct: 316 AMRKSDFHPNEVLIVDLLSACGQSV 339

BLAST of Carg15930 vs. TAIR 10
Match: AT5G19020.1 (mitochondrial editing factor 18 )

HSP 1 Score: 182.6 bits (462), Expect = 3.6e-46
Identity = 93/186 (50.00%), Postives = 126/186 (67.74%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE----FSHHHDLSVAPNEVT 93
           GYV+ R L +A +LFD MP+R CVS+TT+I G +QN+ WSE    F    +L +  NEVT
Sbjct: 116 GYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVT 175

Query: 94  MASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMS 153
           +A+V+S CSH+GGIW+C ML +L +KL     V +ST LL+MYC+C  LKDAR+LF  M 
Sbjct: 176 LATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMP 235

Query: 154 VHNVASTWNVILKGYVKAGLVDEARELFE---SKEMISWATMIDEYVQVKQLREALMIID 213
             N+  TWNV+L GY KAGL+++A ELF+    K+++SW TMID  ++  QL EAL+   
Sbjct: 236 ERNLV-TWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYT 295

BLAST of Carg15930 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-18
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 34  GYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSEFSHHHDLSVAPNEVTMASV 93
           GYV+ R L  AR+LF+ MP+R   S+ TM+ G +QN C  +     D     N+V+  ++
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194

Query: 94  MSDCSHMGGIWNCWMLNALVVKLHFVSHVLIS-TTLLYMYCVCPSLKDARRLFRAMSVHN 153
           +S       + N  M  A ++     +  L+S   LL  +     + +AR+ F +M+V +
Sbjct: 195 LS-----AYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 254

Query: 154 VASTWNVILKGYVKAGLVDEARELFES---KEMISWATMIDEYVQVKQLREALMIID 207
           V S WN I+ GY ++G +DEAR+LF+    +++ +W  M+  Y+Q + + EA  + D
Sbjct: 255 VVS-WNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

BLAST of Carg15930 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-18
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0

Query: 7   VMEVLPMAGCCL-IRVLSWILYVVTLCCGYVKLRELDNARQLFDKMPDRGCVSFTTMILG 66
           +M +  + G CL    LS       L   Y KL E+++AR+LFD+ P++   S+  MI G
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 67  LSQN----DCWSEFSHHHDLSVAPNEVTMASVMSDCSHMGGIWNCWMLNALVVKLHFVSH 126
            +QN    D  S F        +PN VT+  ++S C+ +G +     ++ LV    F S 
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 127 VLISTTLLYMYCVCPSLKDARRLFRAMSVHNVASTWNVILKGYVKAGLVDEARELF 178
           + +ST L+ MY  C S+ +ARRLF  M+  N   TWN ++ GY   G   EA  +F
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHGQGQEALNIF 509

BLAST of Carg15930 vs. TAIR 10
Match: AT2G37320.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-18
Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 40  ELDNARQLFDKMPDRGCVSFTTMILGLSQ----NDCWSEFSHHHDLSVAPNEVTMASVMS 99
           E++NA ++F++MP+R  VS+T MI G +Q    + C   +S     +  PN+ T  +++S
Sbjct: 170 EVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLS 229

Query: 100 DCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFRAMSVHNVAS 159
            C+  G +     ++   + +   S++ IS +L+ MYC C  LKDA R+F   S  +V S
Sbjct: 230 ACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVS 289

Query: 160 TWNVILKGYVKAGLVDEARELFE 179
            WN ++ GY + GL  +A ELFE
Sbjct: 290 -WNSMIAGYAQHGLAMQAIELFE 311

BLAST of Carg15930 vs. TAIR 10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-17
Identity = 59/201 (29.35%), Postives = 99/201 (49.25%), Query Frame = 0

Query: 31  LCCGYVKLRELDNARQLFDKMPDRGCVSFTTMILGLSQNDCWSE-FSHHHDL---SVAPN 90
           +  GY+K  EL++A+++F +MP R  VS++TMI+G++ N  ++E F +  +L    ++PN
Sbjct: 209 MLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPN 268

Query: 91  EVTMASVMSDCSHMGGIWNCWMLNALVVKLHFVSHVLISTTLLYMYCVCPSLKDARRLFR 150
           EV++  V+S CS  G      +L+  V K  +   V ++  L+ MY  C ++  AR +F 
Sbjct: 269 EVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFE 328

Query: 151 AMSVHNVASTWNVILKGYVKAGLVDEARELFESKEMISWATMIDEYVQVKQLREALMIID 210
            M       +W  ++ G    G  +EA  LF   EM ++    D           +  I 
Sbjct: 329 GMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF--NEMTAYGVTPD----------GISFIS 388

Query: 211 LASACGQAVPFYCGFLKEHND 228
           L  AC  A     G ++E  D
Sbjct: 389 LLHACSHA-----GLIEEGED 392

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023006214.11.9e-6565.85pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita ... [more]
XP_022959003.12.5e-6565.37pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita ... [more]
KAG7013592.19.5e-6565.37Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6575019.19.5e-6565.37Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023548174.12.1e-6464.88pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
P0C8Q85.1e-4550.00Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidop... [more]
Q9SY023.4e-1731.64Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
Q9SUH65.9e-1734.09Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
Q9ZUT47.6e-1734.97Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX... [more]
Q9CA546.5e-1629.35Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1L1I99.3e-6665.85pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Cucurbit... [more]
A0A6J1H4P41.2e-6565.37pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Cucurbit... [more]
A0A1S4E2272.5e-6363.90pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X1 ... [more]
A0A1S4E2292.5e-6363.90pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X2 ... [more]
A0A1S3C8772.5e-6363.90pentatricopeptide repeat-containing protein At5g19020, mitochondrial isoform X3 ... [more]
Match NameE-valueIdentityDescription
AT5G19020.13.6e-4650.00mitochondrial editing factor 18 [more]
AT4G02750.12.4e-1831.64Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G30700.14.2e-1834.09Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G37320.15.4e-1834.97Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G74630.14.6e-1729.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 19..106
e-value: 3.2E-10
score: 41.6
coord: 107..215
e-value: 1.8E-13
score: 52.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 33..57
e-value: 3.4E-4
score: 18.6
coord: 156..178
e-value: 7.2E-6
score: 23.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 34..56
e-value: 0.0049
score: 17.0
coord: 183..206
e-value: 0.38
score: 11.1
coord: 155..178
e-value: 2.6E-6
score: 27.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..189
score: 9.229472
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 13..179
NoneNo IPR availablePANTHERPTHR24015OS07G0578800 PROTEIN-RELATEDcoord: 75..205
NoneNo IPR availablePANTHERPTHR24015:SF1978OS02G0769900 PROTEINcoord: 75..205
NoneNo IPR availablePANTHERPTHR24015:SF1978OS02G0769900 PROTEINcoord: 13..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15930-RACarg15930-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding