Carg15883 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15883
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RmlC-like cupins superfamily protein
Location	Carg_Chr08: 6903874 .. 6906310 (-)
RNA-Seq Expression	Carg15883
Synteny	Carg15883

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGGTGCTCTTCCGTCCTCTTTACCAAACCTGCTCTAGAGACTTTTGGCTCTTTGATTGAATTGAATGATTTATCTGCAAATTTGGAGTGCTGTACAGGAAATTAAACCCTAAATAATATGAAAACGATGAAGAGTTGAAGAAAATCCGAGAGGACGGGATGCTTCACTAATCCATCGATGTTTTCCATTTCTATTTTTTAGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGTAGGATTTACTTGATATATGCACACAGAAACTTGGTGATTATGAAGAAATTCGTTACACTTTGATCGAACTGACCATCTATTCGAAGATTGTTATTCATGTAAATCTTAGTCAAAACAAAAATAAAATTATTTCATAGGTTACAATCTTCATAGTTGGATTATCCAGAGTTAATGAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTGTGTGTATTCTTCTGTACTATACTATGGCAATCAATACAAATCTGTGAGGTTTAGCTCAGGCTGTGCATTGTTGAGTATGGCTTAGATTAAATACTATATAAATTTGCCAACTGCTGTTGAAACATGGCTTAATAAATGTCTGAGCCTCATATTATTTATGAATTGAGCTTCTCAAAAGAATTGTAATCTGAACCACTTTGGAAAATTATTGGCCCCATTTGATTTTATGATTAAACGATAGAGATTTCTCTCTTGCAGGAAAGATATGGAATCTCGAATATAAAATTCTTATAAACTACATTTATTTTTATTGTTCTACAGGACCCTGTATTTGTGTCGATTAATACTGAAGCGCGTAGTACCTTATCACGAAAGCCTGTTTGATAATGTTTTACAGACTATTTGAGTTTGTGTGTCAGATAAATAGTTCAATCATTTCCTTCAGAATACTGTTCTTGTTATACATGTCAATTATATTCTTCCCTACAGTATTGAGGGGTAGCTATGGTGTTTTTGCTTTAGAGATTATTAACTTTTTTAGTTCTCTTGTTGACCAGAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGGTAAGCATCTTCTGAATTTGCAACATTGATGTTAATTACATGCTCTTTCTATCCATTCTCGCCAGGCTTTTGATGAATGATCTACATTTTCGACGTCTTGTGCACTTGTATTGCCAAATATTGCAGCTGTTATGATATTAAAATCCCATATGCCTGCTTTACAAACTTCATTTATACCGTCTAGTTAACACAAAGAGTGCTTCTTCTTAAGTGAGTGCTTCTTCTTAAGTGTTATGAATTTTCTTAAAACTGAGTTTGATTCTGTTTGCAGAATTTTGTTAGTCAAGAACTGCTGGAGTTGGATTCTATGACAGCGAGGACCTATTTGCTTGGTTTGGTCTAAAAGACTATGCTTGCCAGTTGCTCTTTTCTGCTGCTCAACTGCTCCTAAAAAGTTCAATTATTTCATATTCATCAGAAGGTGAGCTAAAATTGAACAGTAGTTCAAAAAAATAAATAAAATAATAAATAAATAAATTGAAAATATTGTCGAGCGCTAATATATATGTGTAATAGCTCAAGCCCACTGCTAACATATGTCCTCTTTGGGCTTTCCCTTTCAGGTTTCTCTTCAAGATTTTTAAAACACGTCTGCTAGGGAGAGGTTTCACCCCTTATAAAGAATACTTCGTTCTGTTGTGGAATCTCAAAATATGTCTATTTTGTTTCGATTTGGGAGTTATAAGACTTGAGTTCCACATAATTATTTGTGATAGTTTAGGATCAGATAACCGAGTCAGCACTAGTTTTTCATTGTTCATTTTTATGACTTATTTGGTTGAGGAAGAAAGAATTATGGAGGTTTTTGAAAATATAACTACTGCAGTTTTGAAGGAGATTTAGAAAGGTCATTTATATGATTTTATGTTTATTTTGCATGAAGTCATCTTTGTAGAAGGCAGTTTGAAGAGAGAATTTCATTAAATGTAGTGTTGTGTCCATGACAGAGCTGGGAACTGAACTGTTTTACTCATGTCTGCAGTAGTAATACTAATAAGTACCAAGTATCAAATGACGAAAGCTCTAACGTAAAGATAACTTCATATTGGACAGGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

mRNA sequence

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

Coding sequence (CDS)

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCCGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGATCAAGCAGCTAAGATCATGAAAACACACCTGGGATGGGAACAATATCATTACCCTATAGGAGCAGCCAAGCTAAAGCCAGCTGAACTGGGATATAACCATGCTTCACAGCTACATTAG

Protein sequence

MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKSTSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENDQAAKIMKTHLGWEQYHYPIGAAKLKPAELGYNHASQLH

Homology

[Close]

BLAST of Carg15883 vs. NCBI nr
Match: KAG7026216.1 (hypothetical protein SDJN02_12715, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKS 60
           MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKS
Sbjct: 1   MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKS 60

Query: 61  TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENDQAAKIMKTHLGWEQYHYPIGAAKL 120
           TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENDQAAKIMKTHLGWEQYHYPIGAAKL
Sbjct: 61  TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENDQAAKIMKTHLGWEQYHYPIGAAKL 120

Query: 121 KPAELGYNHASQLH 135
           KPAELGYNHASQLH
Sbjct: 121 KPAELGYNHASQLH 134

[Close]

BLAST of Carg15883 vs. NCBI nr
Match: KAG6593872.1 (hypothetical protein SDJN03_13348, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.8e-34
Identity = 82/95 (86.32%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKS 60
          MNDSNEDQRLPLHGNPKEFVSMDQLA  L           ESPFGPRLTDHKGSIQQGKS
Sbjct: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGAL----------PESPFGPRLTDHKGSIQQGKS 60

Query: 61 TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN 96
          TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN
Sbjct: 61 TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN 85

[Close]

BLAST of Carg15883 vs. ExPASy Swiss-Prot
Match: F6HDT7 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04080 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS+EDQRLP H +PKEFVS+DQLA
Sbjct: 17 MDDSDEDQRLPHHRDPKEFVSLDQLA 42

[Close]

BLAST of Carg15883 vs. ExPASy Swiss-Prot
Match: Q8H185 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=ARD4 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.8e-04
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAV--ELFW 32
          M+DSNEDQRLP H NPKE VS+D LA    L+W
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLAELGVLYW 40

[Close]

BLAST of Carg15883 vs. TAIR 10
Match: AT5G43850.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-05
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAV--ELFW 32
          M+DSNEDQRLP H NPKE VS+D LA    L+W
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLAELGVLYW 40

[Close]

BLAST of Carg15883 vs. TAIR 10
Match: AT4G14716.1 (acireductone dioxygenase 1 )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEFVS+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFVSLDKLA 43

[Close]

BLAST of Carg15883 vs. TAIR 10
Match: AT4G14710.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

[Close]

BLAST of Carg15883 vs. TAIR 10
Match: AT4G14710.2 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

[Close]

BLAST of Carg15883 vs. TAIR 10
Match: AT4G14710.3 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.5e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

The following BLAST results are available for this feature:

BLAST of Carg15883 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026216.1	2.0e-70	100.00	hypothetical protein SDJN02_12715, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593872.1	1.8e-34	86.32	hypothetical protein SDJN03_13348, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg15883 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F6HDT7	7.5e-04	76.92	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=2976...	[more]
Q8H185	9.8e-04	66.67	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg15883 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15883 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43850.1	6.9e-05	66.67	RmlC-like cupins superfamily protein	[more]
AT4G14716.1	2.0e-04	73.08	acireductone dioxygenase 1	[more]
AT4G14710.1	4.5e-04	69.23	RmlC-like cupins superfamily protein	[more]
AT4G14710.2	4.5e-04	69.23	RmlC-like cupins superfamily protein	[more]
AT4G14710.3	4.5e-04	69.23	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15883-RA	Carg15883-RA	mRNA