Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGTTAGTAAATTCACTAAGCATTCTTCTTGAATTGGAACGAACGTCGTTTTTCACTTTCGTGATTTTGTTTTCCTTTTAGTTAGTCGGGATTTTTCTGGTTGTTTTCCGATCGATTATGGTTAGATACTCAGAAAATGCTAATATTTGATTAATATGATTTTCGATTCCCATCCAACGATTCTTTCTCATCCATTAGAAATCAATAAAGGTAAATGAAAAGAATGTCGAAATCAAACATTATCTCTTCCAGATGACGCTGTTCTCTTTTGCAGGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGGTTACTATCTTAATTAAGTGTAAATGTTTTTATATTCCAGCTCAAATACTGCTGTGATGGTGGCCAATTCAATCTGAATATCTCTGTTAATATCCACGGAAAGAACCTAGGACTTTTGGCTGAGTTCTTGTGCATATGAAGAGGTATGACCTTGATATGTTGTTTGAGGCATGCTGATATATGTGATAGCTGCTAGGAGTTGCCTGTTGATGTTTGCAGGGAGATAAACTGGCTATACAAGAAAGGTATTCACTGGCCTATAGGAGAACCTCTGTTTTAGTTTGAAAAGAGGGATATTTGAGCTATAATTTAGGTAAACAAGGCTCATGGTTTGTCACATATGTGTTTTAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA
mRNA sequence
ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA
Coding sequence (CDS)
ATGGCGGATTCAAATTCACCAGCGACCCAAAATTCCCTCCCCCAAGACAACAATACTGCAACTCCCATGGCGTCTTCAGGAGGAGCCCAAAGAAGAAAGCTTCCTTCCCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTCACTTCTCACGATGCTTCAATCAAGGTAATCGAAGACCTTCAAAATGCTCTTGTAAGGATCATCTCCTCCGGCAGAGGCAAGAAGGACAAGCTCCTGGTGGATACCTCAAGGAAGATCGACGCCACTAATACCCGTCTTGCCATTCTCGACCTAAAGTTGGACTCCAAGCCCGGCTATGCCCAGACTTTTGCCCTAGGCTTGGCTTCTGGATCTGTTTTGAATGGAATTGGCGCCGTGATGCCCCATGTTTTTGGGGCTATCGCCAATATTTGGAGCTCTGGGAAAGTGAGGAAGGCTGACAATGTTTTAGAACTCTTGAACAAGGACATCCACGCAGAGGCTCCTGCTTTCTGGATGGTAAGCCGGGAGCTAGCTAGAGTGATTGGAAAGGGTAGTACAGGGGATGTCTAA
Protein sequence
MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPHVFGAIANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKGSTGDV
Homology
BLAST of Carg15861 vs. NCBI nr
Match:
KAG7026194.1 (hypothetical protein SDJN02_12693, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 357.1 bits (915), Expect = 9.4e-95
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG 180
VLNGIGAVMPHVFGAIANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG 180
Query: 181 STGDV 186
STGDV
Sbjct: 181 STGDV 185
BLAST of Carg15861 vs. NCBI nr
Match:
KAG6581756.1 (hypothetical protein SDJN03_21758, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG 180
VLNGIGAVMPHVFGA+ANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG
Sbjct: 121 VLNGIGAVMPHVFGALANIWSSGKVRKADNVLELLNKDIHAEAPAFWMVSRELARVIGKG 180
Query: 181 STGDV 186
STGDV
Sbjct: 181 STGDV 185
BLAST of Carg15861 vs. NCBI nr
Match:
XP_022955496.1 (uncharacterized protein LOC111457504 [Cucurbita moschata])
HSP 1 Score: 270.8 bits (691), Expect = 8.8e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNGIGAVMPHVFGAIANIWSS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSS 142
BLAST of Carg15861 vs. NCBI nr
Match:
XP_023527033.1 (uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 266.5 bits (680), Expect = 1.7e-67
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSL QDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNGIGAVMPHVFGA+ANIWSS
Sbjct: 121 VLNGIGAVMPHVFGALANIWSS 142
BLAST of Carg15861 vs. NCBI nr
Match:
XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])
HSP 1 Score: 263.5 bits (672), Expect = 1.4e-66
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASS GAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASS-GAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNGIGAVMPHVFGA+ANIWSS
Sbjct: 121 VLNGIGAVMPHVFGALANIWSS 141
BLAST of Carg15861 vs. ExPASy TrEMBL
Match:
A0A6J1GTX5 (uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC111457504 PE=4 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 4.3e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNGIGAVMPHVFGAIANIWSS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSS 142
BLAST of Carg15861 vs. ExPASy TrEMBL
Match:
A0A6J1J075 (uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022 PE=4 SV=1)
HSP 1 Score: 263.5 bits (672), Expect = 6.8e-67
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
MADSNSPATQNSLPQDNNTATPMASS GAQRRKLPSPQELVSHYESQGLTSHDASIKVIE
Sbjct: 1 MADSNSPATQNSLPQDNNTATPMASS-GAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS
Sbjct: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNGIGAVMPHVFGA+ANIWSS
Sbjct: 121 VLNGIGAVMPHVFGALANIWSS 141
BLAST of Carg15861 vs. ExPASy TrEMBL
Match:
A0A6J1D308 (uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016865 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 8.6e-54
Identity = 114/137 (83.21%), Postives = 127/137 (92.70%), Query Frame = 0
Query: 6 SPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNA 65
SP NSLPQ N+TATPM+SS G QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNA
Sbjct: 4 SPPLPNSLPQANSTATPMSSS-GTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNA 63
Query: 66 LVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGI 125
L RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+
Sbjct: 64 LFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGV 123
Query: 126 GAVMPHVFGAIANIWSS 143
G+VMPHVFGA+ANIWSS
Sbjct: 124 GSVMPHVFGALANIWSS 139
BLAST of Carg15861 vs. ExPASy TrEMBL
Match:
A0A5A7VAF7 (Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00060 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 110/142 (77.46%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
M DS SPA NSLPQ + +P S RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1 MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61 DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNG+G VMPHVFGA+ NIWSS
Sbjct: 121 VLNGLGTVMPHVFGALTNIWSS 138
BLAST of Carg15861 vs. ExPASy TrEMBL
Match:
A0A1S4DV46 (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 110/142 (77.46%), Postives = 122/142 (85.92%), Query Frame = 0
Query: 1 MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60
M DS SPA NSLPQ + +P S RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1 MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60
Query: 61 DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120
DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61 DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120
Query: 121 VLNGIGAVMPHVFGAIANIWSS 143
VLNG+G VMPHVFGA+ NIWSS
Sbjct: 121 VLNGLGTVMPHVFGALTNIWSS 138
BLAST of Carg15861 vs. TAIR 10
Match:
AT1G16790.1 (ribosomal protein-related )
HSP 1 Score: 139.0 bits (349), Expect = 3.7e-33
Identity = 75/134 (55.97%), Postives = 95/134 (70.90%), Query Frame = 0
Query: 14 PQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNALVRIISSG 73
P N A S + +K P+P EL+SHY+ +GL +ASIKVIEDLQNALVR++SS
Sbjct: 4 PATPNAAEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVVSSS 63
Query: 74 R--GKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIGAVMPH 133
R KDKL+ D +RKIDA N RLA++D KL++KPGY +TFALGLASG+ LNGI AV PH
Sbjct: 64 RNASSKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLNGISAVWPH 123
Query: 134 VFGAIANIWSSGKV 146
V I IWS+ ++
Sbjct: 124 VTRGIGQIWSAVRI 136
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7026194.1 | 9.4e-95 | 100.00 | hypothetical protein SDJN02_12693, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6581756.1 | 1.6e-94 | 99.46 | hypothetical protein SDJN03_21758, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022955496.1 | 8.8e-69 | 100.00 | uncharacterized protein LOC111457504 [Cucurbita moschata] | [more] |
| XP_023527033.1 | 1.7e-67 | 98.59 | uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022980748.1 | 1.4e-66 | 98.59 | uncharacterized protein LOC111480022 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GTX5 | 4.3e-69 | 100.00 | uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC1114575... | [more] |
| A0A6J1J075 | 6.8e-67 | 98.59 | uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022... | [more] |
| A0A6J1D308 | 8.6e-54 | 83.21 | uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016... | [more] |
| A0A5A7VAF7 | 1.2e-50 | 77.46 | Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S4DV46 | 1.2e-50 | 77.46 | uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G16790.1 | 3.7e-33 | 55.97 | ribosomal protein-related | [more] |
