Carg15449 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15449
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description54S ribosomal protein L51, mitochondrial
LocationCarg_Chr06: 10170343 .. 10172628 (+)
RNA-Seq ExpressionCarg15449
SyntenyCarg15449
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCTGTCTCAGGTATGTCGTTCGTTCTTATTGAAGCTAGAGAGCTTCAGTACTTTGTACAATTCGGATATTACAGCTTCTTCTTAGATTCTCATGAGCTGCTTCTTCCATTGTTGCTCTTTTCGGTGGAGGGTAGTAGAGATCGTCAAATTTTGATATTCGTTTTTCTTCTTAAGCTTCTAGTATCTTTCTTTTTGGATAACCTTATGTTTCCTTATTCATGGATTCTGTAAATCATTTGATGATTATTGATTTATTCGTTTAGATTTGAGCTCTTGGTTGTGTGAGTTAAGTTCGTATTCGTATATTTCTTTTTCATTTCTTCGATTGCTATTTGGGACTTGATTTTTTTAATCCCTTTTGCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGTTTGTTGGATTGCTAAACCATTATCTACTTGATTATTTCATTACTACTCAGATTTCATTTCTTAACTGACGGAGGTTTAAATTTTGACCTCAAAATACTTTGTATTTCCATGTTCCAGCATAATTATTTTATACTCATCTTGCTTTCTTTTAGCTTACTGGTTTGAGTTGGGTAAAAAGTTAAGGAAATTGCTTGGATTTTTTGAAATGGACTGTGCAAAGAAAAGGTGGGTTTTTTAGGGCTAGGGTTCTTGGAGAGTGCAGTAAGACCCTTACTCCTTTCTCCACCCATTTTTTCTTTTACCTAAAGCTGAATTCCTTTATTATTTTTATTTATTATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAGCATTCTTTATAAGAGTGTGGAAACATCTCCCTTGTAGACGCGTTTTAAAAACCTTGAGGGGAAGTCCAGAAGTAAAAGTCCAAGGAGAACAATATTTGCTAGCGGTGGGCTTGAGCTGTTACATTTACCTACCTTAAACCTAGAATATGAGATCATCCTAGTTTTCTAGGAATAAGCTCGATGCTTCTGTAGTTTTATTTGATTGTTGTTATAATTATTATCTAGCTTTTACAGTGAATCAAATACTGTTTCACATGTCCTGAATGATTTGTATCTTATCATTGAACTTTCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAGTAATTCTCTTTCCCTCTCTCAGCTTCTTGCAGTTATAATTTAATAGTGTTTGAACATGGAATTTCCCATATTTCATTGCCTTCACAGAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTCGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGTGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTGTTTCATTTTAGATTGGTTATGTGGTTTTTTCCAGTCTTAAATGTCGATGAAAGGTTCGACCAAAATGGAGCGAAAACGGGAAGTTGGATGAAAAGAAGTGAAGGAAAGAATTACTAGTAGAAGGGGGAAAAAAAAAACTAGCAAACAATAAAAGAAAAAAGATCCCGTTAGGAATCACGAACTTTCACAATAATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGGTTTGCCCAAAGGGTCTCACGTCAATGGAGAGATTAAAGTTCGGCC

mRNA sequence

AATCGCTCGAGCCTCCCTCCATCATTTGCTCTCCCGCTCTTTGTCGCTCTTTGGGTCTCTTCGTTGGTAGCCGCACCGATCCTCTGTCTCAGATATAAAGATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGAGGATGCTTCCTAAAGTGCCTGATTTTCTTTCGAGATTGTCTTTTTCCATCAAGATTATGAGATTCCTTAATATGACGTTGTTGAAACAAAACTTCTTTTTAGAGTAGCTTGAGTTTGTAGTTTGTAGTAGTCCAACGTAAACTTTTGAGGCTATTTTGTTCCAATTCTCTGAATACTCTCTCTGGAGAAAGTCTTTCCATGAAACATGCAACAATTGCGAACTTATCTTGAATTGATGAAGCAAAACAGGATTCTGAATTTATTTGTGAACATATTTATAGGTTGTTGTGATGTTAATTAAATGAGATCCAAGAGTAAATGATATGAACTTGGTTCATATCAGTAAATGCAGCAGCTAGTCCTTGTATGGTATTCTTGGTTGGGGTATTGTCCTTTTCTTTGCCATGTTATAATAATGAATGCAAGAGTTGTTGTTTCATTTTAGATTGGTTATGTGGTTTTTTCCAGTCTTAAATGTCGATGAAAGGTTCGACCAAAATGGAGCGAAAACGGGAAGTTGGATGAAAAGAAGTGAAGGAAAGAATTACTAGTAGAAGGGGGAAAAAAAAAACTAGCAAACAATAAAAGAAAAAAGATCCCGTTAGGAATCACGAACTTTCACAATAATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTTGGTTTGCCCAAAGGGTCTCACGTCAATGGAGAGATTAAAGTTCGGCC

Coding sequence (CDS)

ATGGCTTTACGAGGTGTATGGCAGCTTCAGAAGCTGATTGTCAGCTATTGTGATTGGGGTGGAAGCAGTAGGGGTATCAGGGCATTTATGGACTCGCAATTGCCAGATTTTAAGAAGAAAAACCCTCAGCTAGAAGTAGTTCGTGAACTCATTCGTGGGCAGCATCCACACTTGAAGGCCTTCTACAAGAACAATAATCAACGGGTGGTATGTGTAAGGAATTTGGATGCGGAAGAAATACATTTACATGCAACGAGGCTAAGGAATGCACTGGGGCGAAAGGTCATAAAACTGAAGACAAGACATGTGACCAAAAATCCTAGTGTGCAAGGTACGTGGAAAACTGATGTAAGATTTTGA

Protein sequence

MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Homology
[Close]
BLAST of Carg15449 vs. NCBI nr
Match: KAG7029113.1 (mrpl51 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022932626.1 (54S ribosomal protein L51, mitochondrial [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_022972093.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.1e-61
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: XP_023538941.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 5.7e-61
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDW GSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWSGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. NCBI nr
Match: KAG6597670.1 (hypothetical protein SDJN03_10850, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.8 bits (621), Expect = 7.4e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD 117
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTD 116

[Close]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match: Q9UUC8 (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 0 

Query: 10  QKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYKNNNQRV 69
           +++  SYC+WGGSS+G++ F+ ++L    K++  +E      +G+HP ++A+Y    ++V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           +C R + A  I   A   R++ G K   +K    + NPSV+G W
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIW 127

[Close]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match: Q758S3 (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-12
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNPQLEVVRELIRGQHPHLKAFYKN 65
           ++  +K+ + YC+WGGSS+G+R F+ S +L  + +K PQ++    + +  HP LKA Y N
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQ-FEVVAKAGHPVLKAEYIN 79

Query: 66  NNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTK-------NPSVQGTW 114
              + +CVRNL+ + + L    LR + G ++     RH  K       N SV+G W
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVW 129

[Close]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match: Q06090 (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 38/114 (33.33%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMDS-QLPDFKKKNP--QLEVVRELIRGQHPHLKAFY 65
           V+  +K+ + +C+WGGSS G+R F+ S +L  + ++ P  Q EV+R   +  HP L+A Y
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMR---KSGHPLLRAEY 79

Query: 66  KNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRH---VTKNPSVQGTW 114
            N  ++V+CVRNL+ + +      L+++ G  +++ +T++    + N SV+G W
Sbjct: 80  TNGREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIW 129

[Close]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match: Q99N89 (39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 0 

Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYK 63
           R V QLQ+L +S      SSRG R F++ ++ DF ++NP + V         P + A Y 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   V +   EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match: Q8N983 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 0 

Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKAFYK 63
           R V QLQ+L  S    G SSRG R F++ ++ DF ++NP + +         P + A Y 
Sbjct: 21  RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80

Query: 64  NNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTW 114
           N   R   +     EEI     +L +  G  VI+++    T NPS+QG W
Sbjct: 81  NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match: A0A6J1EWV2 (54S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439127 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match: A0A6J1I8W1 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470732 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.5e-62
Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQL+VVRELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLKVVRELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNNQRVVCVRNLD EEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF
Sbjct: 61  FYKNNNQRVVCVRNLDVEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 119

[Close]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match: A0A6J1DVX7 (54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024881 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.2e-57
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLP FK+KNPQLEVV ELIRGQHPHLKA
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKNNN+RVVCV+NLD EEI+LHA RLRNALGRKVIKL+TRHVTKNPSVQGTW TDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match: A0A6J1IW90 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479166 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 99/119 (83.19%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KLIVSYCDWGGSSRGIRAFMDS+LP F++KNPQL++V ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYK+NN RV+CV+N+D E+IHLHATRLRNALGRKV+KL+TRHVTKNPS QGTW TDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match: A0A061EJZ0 (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao OX=3641 GN=TCM_019878 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQLQKLIVSYCDWGGSSRGIRAFM+SQLP FK+KNPQLEVV ELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMESQLPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
           FYKN N+RV+CV+N+  E+I LHA+RLRNALGRKV+KLKTRHVTK+PSVQGTW TDV+F
Sbjct: 61  FYKNKNERVICVKNMTPEDILLHASRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVKF 119

[Close]
BLAST of Carg15449 vs. TAIR 10
Match: AT3G59650.1 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.4e-51
Identity = 89/119 (74.79%), Postives = 108/119 (90.76%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LP  K+KNPQLEV+ EL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYKNNNQRVVCVRNLDAEEIHLHATRLRNALGRKVIKLKTRHVTKNPSVQGTWKTDVRF 120
            Y+N N+RVVCV+N+D EE+ L+ATRLRN+LGRKV+KL+TRHVTK+PSVQGTW T V+F
Sbjct: 61  IYRNRNERVVCVKNMDPEEVLLNATRLRNSLGRKVVKLRTRHVTKHPSVQGTWTTAVKF 119

[Close]
BLAST of Carg15449 vs. TAIR 10
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein )

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-46
Identity = 89/146 (60.96%), Postives = 107/146 (73.29%), Query Frame = 0 

Query: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPDFKKKNPQLEVVRELIRGQHPHLKA 60
           MALRGVWQL+KL+VSYC+WGGSSRGIRAFM+S+LP  K+KNPQLEV+ EL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYK---------------------------NNNQRVVCVRNLDAEEIHLHATRLRNALGR 120
            Y                            N N+RVVCV+N+D EE+ L+ATRLRN+LGR
Sbjct: 61  IYSMYISPLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGR 120

The following BLAST results are available for this feature:
BLAST of Carg15449 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029113.11.4e-62100.00mrpl51 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022932626.13.9e-6299.1654S ribosomal protein L51, mitochondrial [Cucurbita moschata][more]
XP_022972093.11.1e-6198.3254S ribosomal protein L51, mitochondrial-like [Cucurbita maxima][more]
XP_023538941.15.7e-6197.4854S ribosomal protein L51, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
KAG6597670.17.4e-61100.00hypothetical protein SDJN03_10850, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg15449 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9UUC82.1e-1332.6954S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
Q758S33.9e-1234.4854S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /... [more]
Q060901.6e-1033.3354S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
Q99N891.5e-0834.5539S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1... [more]
Q8N9832.6e-0833.6439S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 ... [more]
BLAST of Carg15449 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EWV21.9e-6299.1654S ribosomal protein L51, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I8W15.5e-6298.3254S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1DVX73.2e-5791.6054S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IW902.5e-5483.1954S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A061EJZ04.7e-5384.03Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao ... [more]
BLAST of Carg15449 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G59650.14.4e-5174.79mitochondrial ribosomal protein L51/S25/CI-B8 family protein [more]
AT3G59650.21.9e-4660.96mitochondrial ribosomal protein L51/S25/CI-B8 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 18..91
e-value: 2.1E-18
score: 77.1
IPR007741Ribosomal protein/NADH dehydrogenase domainPFAMPF05047L51_S25_CI-B8coord: 26..76
e-value: 2.2E-10
score: 40.3
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..118
e-value: 1.2E-43
score: 150.4
IPR03992739S ribosomal protein L43/54S ribosomal protein L51PANTHERPTHR2139639S RIBOSOMAL PROTEIN L43coord: 1..117
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 8..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15449-RACarg15449-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome