Carg15440 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15440
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 10220170 .. 10221019 (-)
RNA-Seq ExpressionCarg15440
SyntenyCarg15440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTTCTGGGTTTGGAAATTCGAGTTCATTTGCGCATTTTCTTGGTGTTCTTGGGTAAAGTTCTTTTGTACTGAATGTGTGAGGTGCTATGATTTTGGTTTTTTTTTTCTGGTTTTTTTTTTCTTCTTCTCTTTATTGTGTGAACTTCTACGTGGATTGTTTTTGCATGTTTTGTCTGAATTTACTGAAGCGAACTGTCTGATATTTGAATTTTAAATTGGGATGGAATATTAAGATGAAAGAACAGTGCAGCTTTTGGTGTTCGATTTGTTAGTGAAATAATGGATGTTCAGCGTAATTAGTCTGCTAGAAGTTCTAATTTAGGCTCTATTGTTGCGCAAATTTGATTTACAAGATGCGGGAAGTTTCGAGTGTTTTCTAGGCTGCTTATTTTTGTGAAGCTAGGCGAGAATCATTCGAACTTGACTTATGAAGAACTTGAAACAATTGTCACCGTAAAGGATTTGTGGGTCTGTTGTTCCGTTACATAAGAAAGAATTAGCACCCCTAACTTCTCGTTTTTAAGGATTGGTAGCGCGTTGTTTAAGTGACTAGTATGGGATGACTTAGGAACCATTGAATTATTGGGGATAAGGTATCATGAGGTTGTGGGATTTATTTGTCATGTAAATGTTTGCATAGTTGATGTGAAATGGAGTGCCAGTTTAAATCTTGCACATTGAATTCAGTGTCCACTATGACCTAATTAAATTTGATTTCATGGTGTATAAATACGTTTTATTTTGGACTTTTTTTTGACAGAACATAGTGTCGTTTCTTAGCCATTGGTGGACCTCTATCTGCACTAGACAATGGATTAAAGAAAATGCTGCACGTATTAAGTAG

mRNA sequence

ATGCTGTTTCTGGGTTTGGAAATTCGAGTTCATTTGCGCATTTTCTTGGTGTTCTTGGGTAAACTAGGCGAGAATCATTCGAACTTGACTTATGAAGAACTTGAAACAATTGTCACCGTAAAGGATTTGTGGAACATAGTGTCGTTTCTTAGCCATTGGTGGACCTCTATCTGCACTAGACAATGGATTAAAGAAAATGCTGCACGTATTAAGTAG

Coding sequence (CDS)

ATGCTGTTTCTGGGTTTGGAAATTCGAGTTCATTTGCGCATTTTCTTGGTGTTCTTGGGTAAACTAGGCGAGAATCATTCGAACTTGACTTATGAAGAACTTGAAACAATTGTCACCGTAAAGGATTTGTGGAACATAGTGTCGTTTCTTAGCCATTGGTGGACCTCTATCTGCACTAGACAATGGATTAAAGAAAATGCTGCACGTATTAAGTAG

Protein sequence

MLFLGLEIRVHLRIFLVFLGKLGENHSNLTYEELETIVTVKDLWNIVSFLSHWWTSICTRQWIKENAARIK
Homology
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BLAST of Carg15440 vs. NCBI nr
Match: KAG7029122.1 (hypothetical protein SDJN02_10307, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MLFLGLEIRVHLRIFLVFLGKLGENHSNLTYEELETIVTVKDLWNIVSFLSHWWTSICTR 60
          MLFLGLEIRVHLRIFLVFLGKLGENHSNLTYEELETIVTVKDLWNIVSFLSHWWTSICTR
Sbjct: 1  MLFLGLEIRVHLRIFLVFLGKLGENHSNLTYEELETIVTVKDLWNIVSFLSHWWTSICTR 60

Query: 61 QWIKENAARIK 72
          QWIKENAARIK
Sbjct: 61 QWIKENAARIK 71

The following BLAST results are available for this feature:
BLAST of Carg15440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029122.13.3e-32100.00hypothetical protein SDJN02_10307, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15440-RACarg15440-RAmRNA