Carg15409 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15409
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosynthetic NDH subunit of subcomplex B 2, chloroplastic
Location	Carg_Chr06: 10395132 .. 10397693 (+)
RNA-Seq Expression	Carg15409
Synteny	Carg15409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCTACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTATTATCTAGCATATATCTAATATTATCTTTGACCAAATTTTGCCTGGTTCTCTTTGGCCTTTGCTTCATTCATTTATTTATGATCTTTGCTGCGTCAAGCGTTGAGTGAATTCATTTGTCTTGTTTTTCTCCTAATTATGCTGTGGGACTGCAGGAAAAGAAGCTACATTAATGATTTAAGTTAGTGAATCTGAGCTCTGATGGTATGATCTTGTTTACTTTGAACCTAAACTCTATCGGGAATCTCATAACTTTGCTTTTAGTTTCCCCAAAAAGCCTCGTATCAATGGAGATTGTGTTCCTTACCTATGATCCCATGATCTTCCTCTTAATTTGCTAATGTGTGATAGTCCTCCCTACAGTCCTTTTCAACCATTCTCGACAGTCCTCCCCTCGAACAAAGTGTATCATAGGTCCTCCCCTCGAACAAAGTGTACCATAGAGCCTCCCCTGAGACCTATGGAGCTCTCAAACAATTTCCTTAATCGAGGCTCAACTCCTTTCTCTGGAGCCCTCGAATAAAGTACATCATTTGTTCGACACTTCGAGGCTCACAATTTCTTTGTTTGACATTCGAGGAGTCTATTGACATGACTAAATTAAGAGCATGGCTCTGATACCATGTTAGGAATCACAAATCTCCACAATGATATGATATCGTTCACTTTGAGCATAAACTCTCGTGACTTTACTTTTGGTTTCTCTAAAAGGCTTCGTACCAATGGAGATAGTGTTCCTTACTTTATGAACCTATGATCTTCCTCTTAATTAGTTAACGTGAGACTACTTCTTTTAATAATCCTCAACAAATCTAACAAATCTAACAAATCCTCCCTTCAAATGAGTATTCATTTGTCCACTCTCTATCATGATTCTACTATTTTCGTGATTCCCTGGTTAAACGATTAAATGTGTGAGAGGTTTAAGAACTGTATTTCATGAATTTTAGGAGGTAGACAAGATTTGAATTGCATTGGATTGTTATTGGGAAGCAGCTAAGTCTTGGCGATCATATTAAATAATTTCTTCCTTCTGTCATATTATGTTTGGAACGTGATTCTGAGCTTGCGTAGTTATTGTTTTCATCTCTATATTGGTAATGATATCATCATTATACTAATTAAGATTTTGTTCTTCCTTCTCAACTCATATTTTTCCTCACTGTAGTGCTAAGTAATGAAGGGTTGAAAACATCTCGTCTTTTGTTAAGACAGTGTACCAAGTTATGTAAGTTGAATGCCTTTGTATGTGGAGGTTTCATTTTGTTTTCCCTGGCATGGTTTTGTTGCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCCATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCTGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCTGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGTAAAGAAATAGCTACTGTATTGCATCACACATCTTTGAACATGTTTTTGGCATCGCTGAAGTACTTTCTATTCAAGAACTTTACTTCTTACTTATCTTAAGAACTTTTTACTTCTTAATCTCTTTTGGCGAAGTACTTATAAGGGAAATATTTTGACGAAAAGCACTTATGTATTTCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA

mRNA sequence

ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCTACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCCATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCTGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCTGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA

Coding sequence (CDS)

ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCTACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCCATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCTGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCTGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA

Protein sequence

MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL

Homology

[Close]

BLAST of Carg15409 vs. NCBI nr
Match: KAG7029153.1 (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 716.5 bits (1848), Expect = 1.2e-202
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360

Query: 361 NL 363
           NL
Sbjct: 361 NL 362

[Close]

BLAST of Carg15409 vs. NCBI nr
Match: KAG6597706.1 (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 714.1 bits (1842), Expect = 5.9e-202
Identity = 360/362 (99.45%), Postives = 361/362 (99.72%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSW LQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWCLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVP+TVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPITVKPGEQWRGAQVIEHD 360

Query: 361 NL 363
           NL
Sbjct: 361 NL 362

[Close]

BLAST of Carg15409 vs. NCBI nr
Match: XP_022932774.1 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 703.0 bits (1813), Expect = 1.4e-198
Identity = 355/362 (98.07%), Postives = 355/362 (98.07%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRA       SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRA-------SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 355

Query: 361 NL 363
           NL
Sbjct: 361 NL 355

[Close]

BLAST of Carg15409 vs. NCBI nr
Match: XP_023540761.1 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 697.6 bits (1799), Expect = 5.7e-197
Identity = 352/362 (97.24%), Postives = 353/362 (97.51%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRA       SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRA-------SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSF SEPQEK GSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTV+PGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHD 355

Query: 361 NL 363
           NL
Sbjct: 361 NL 355

[Close]

BLAST of Carg15409 vs. NCBI nr
Match: XP_022972247.1 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 697.2 bits (1798), Expect = 7.5e-197
Identity = 354/362 (97.79%), Postives = 355/362 (98.07%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRA    SSSSSS SSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRA----SSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHI SYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASK SLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIY+QSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYLQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 358

Query: 361 NL 363
           NL
Sbjct: 361 NL 358

[Close]

BLAST of Carg15409 vs. ExPASy Swiss-Prot
Match: Q94AQ8 (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB2 PE=2 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 9.7e-115
Identity = 213/364 (58.52%), Postives = 265/364 (72.80%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQS 60
           MASL+    LPK   VR             SS+S   T  +  + L DKFGRKGI F +S
Sbjct: 1   MASLISFSLLPKPKAVR-------------SSISAPQTQTINTEKLEDKFGRKGIKFSES 60

Query: 61  NGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVI 120
           N IP V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI
Sbjct: 61  NNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVI 120

Query: 121 NDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVI 180
            +        S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++
Sbjct: 121 VNGEEPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALV 180

Query: 181 VKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAED 240
           VKN G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE 
Sbjct: 181 VKNNGRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAES 240

Query: 241 PDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQG 300
             W  FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQG
Sbjct: 241 SGW--FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQG 300

Query: 301 RELFFRVIRMGFEDIYVQSPGSLSDKFGKD-YFICTGPASMLVPVTVKPGEQWRGAQVIE 360
           R LFFR+IR+GFE++YV SPGS+ DK+GK  YF+CTGP SMLVPV V  GE WRGA VIE
Sbjct: 301 RGLFFRMIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIE 348

Query: 361 HDNL 363
           HDNL
Sbjct: 361 HDNL 348

[Close]

BLAST of Carg15409 vs. ExPASy Swiss-Prot
Match: Q9C503 (Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 OS=Arabidopsis thaliana OX=3702 GN=NDF5 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.4e-22
Identity = 91/381 (23.88%), Postives = 160/381 (41.99%), Query Frame = 0


Query: 8   PLPKLSIVRASSSSSS-------------SSSSSSSSLSPSATSPLPADSLNDKFGRKGI 67
           PL + S +  SSS +S             SS   S+S S S   P+  + L  +F   G 
Sbjct: 15  PLSRSSKINLSSSFASLPLQFHKNIKRLESSVPPSASASASPAFPIDVEYLRREFSGHGA 74

Query: 68  HFHQSNGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVY----------WKDDGFEEVLFT 127
            F          L + NGSS  + ++   I SYK +V+          W +   EEV+  
Sbjct: 75  TFEDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEEEEVVI- 134

Query: 128 TPAANGGKGGIGLVINDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSS---KQM 187
                  +GG+      + +          SDW ++ +  D+ D +Q+EL  S    K++
Sbjct: 135 -------RGGVSSAFRSSDSD-------EISDWRLQGISGDSKDCVQMELRRSDKKIKEI 194

Query: 188 EITYIVTLYSESMATAVIVKNTGPKLLSLNS-AILSHFKFKRRDGAAIQGLEGCSYCSLP 247
           E+  I++L   +++  + + N G   + L   +++S+      +     GLEG  +    
Sbjct: 195 ELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEGSDFVETT 254

Query: 248 PLSSPFEILSPTEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAE 307
           P    F ++                G + +EK G    ++  +  L  + SR+Y      
Sbjct: 255 PFLPRFGVVQ---------------GEKEEEKPGFGGEEESNYKQLNREMSRIYTC---- 314

Query: 308 RSKPVYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASML 362
                    P  +  +D+GR     V R GFE++Y+ SPGS  + + K  ++C GP+S+L
Sbjct: 315 --------APKSFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLL 353

[Close]

BLAST of Carg15409 vs. ExPASy Swiss-Prot
Match: Q40784 (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.4e-06
Identity = 26/76 (34.21%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 285 VYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSPGSLSDKFGKDY-------FICTGPA 344
           VY   PSK   +D  ++  F V + G  D  V +P     K  +D+        +C  PA
Sbjct: 230 VYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPA 289

Query: 345 SMLVPVTVKPGEQWRG 354
           ++  P+T+KPGE+WRG
Sbjct: 290 AVEKPITLKPGEEWRG 305

[Close]

BLAST of Carg15409 vs. ExPASy TrEMBL
Match: A0A6J1EXZ1 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439223 PE=4 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 6.6e-199
Identity = 355/362 (98.07%), Postives = 355/362 (98.07%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRA       SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRA-------SSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 355

Query: 361 NL 363
           NL
Sbjct: 361 NL 355

[Close]

BLAST of Carg15409 vs. ExPASy TrEMBL
Match: A0A6J1I4B2 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470832 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 3.6e-197
Identity = 354/362 (97.79%), Postives = 355/362 (98.07%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPKLSIVRA    SSSSSS SSSLSPSATSPLPADSLNDKFGRKGIHFHQSN
Sbjct: 1   MASLVCLPLPKLSIVRA----SSSSSSFSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           GIPTVDLTVRNGSSLRLHISDAHI SYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN
Sbjct: 61  GIPTVDLTVRNGSSLRLHISDAHITSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DASNSASK SLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV
Sbjct: 121 DASNSASKSSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP
Sbjct: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIY+QSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYLQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 358

Query: 361 NL 363
           NL
Sbjct: 361 NL 358

[Close]

BLAST of Carg15409 vs. ExPASy TrEMBL
Match: A0A1S3CQ42 (photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502972 PE=4 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.9e-170
Identity = 305/362 (84.25%), Postives = 328/362 (90.61%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPK +++RASSSSSS+S             P  ADSLNDKF RKG HFH SN
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSTS------------FPSTADSLNDKFARKGFHFHDSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           G+PT+DLTVRNGSSLRLHISDAH+ SYKPKVYWKDDGFEE+LFTTP A   KGGI LVI+
Sbjct: 61  GVPTLDLTVRNGSSLRLHISDAHLTSYKPKVYWKDDGFEEILFTTPTA---KGGIALVID 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DAS+S+SK SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIV
Sbjct: 121 DASDSSSKSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTG K L+L SAILSHFKFK+RDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+P
Sbjct: 181 KNTGLKPLTLKSAILSHFKFKQRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEEP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQ KAGSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTVKPGEQW+GAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWKGAQVIEHD 347

Query: 361 NL 363
           NL
Sbjct: 361 NL 347

[Close]

BLAST of Carg15409 vs. ExPASy TrEMBL
Match: A0A0A0LCL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G843790 PE=4 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 6.4e-170
Identity = 307/362 (84.81%), Postives = 327/362 (90.33%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPK +++RASSSSSSS+S            P   DSLNDKFGRKG HFH SN
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSSTS-----------FPSTVDSLNDKFGRKGFHFHDSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           G+PT+DLTVRNGSSLRL ISDAH+ SYKPKVYWKDDGFEEVLFTTP A   KGGI LVI+
Sbjct: 61  GVPTLDLTVRNGSSLRLRISDAHLTSYKPKVYWKDDGFEEVLFTTPTA---KGGIALVID 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DAS+S+SK SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIV
Sbjct: 121 DASDSSSKSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTG K L+L SAILSHFKFKRRDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+ 
Sbjct: 181 KNTGLKPLTLKSAILSHFKFKRRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEES 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQ KAGSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQVIEHD 360
           ELFFRVIRMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTVKPGEQWRGAQVIEHD
Sbjct: 301 ELFFRVIRMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWRGAQVIEHD 348

Query: 361 NL 363
           NL
Sbjct: 361 NL 348

[Close]

BLAST of Carg15409 vs. ExPASy TrEMBL
Match: A0A5A7U7W3 (Photosynthetic NDH subunit of subcomplex B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00100 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 9.6e-166
Identity = 298/355 (83.94%), Postives = 321/355 (90.42%), Query Frame = 0


Query: 1   MASLVCLPLPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSN 60
           MASLVCLPLPK +++RASSSSSS+S             P  ADSLNDKF RKG HFH SN
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSTS------------FPSTADSLNDKFARKGFHFHDSN 60

Query: 61  GIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVIN 120
           G+PT+DLTVRNGSSLRLHISDAH+ SYKPKVYWKDDGFEE+LFTTP A   KGGI LVI+
Sbjct: 61  GVPTLDLTVRNGSSLRLHISDAHLTSYKPKVYWKDDGFEEILFTTPTA---KGGIALVID 120

Query: 121 DASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIV 180
           DAS+S+SK SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIV
Sbjct: 121 DASDSSSKSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIV 180

Query: 181 KNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDP 240
           KNTG K L+L SAILSHFKFK+RDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+P
Sbjct: 181 KNTGLKPLTLKSAILSHFKFKQRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEEP 240

Query: 241 DWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGR 300
           DWFSFGSEPQ KAGSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGR
Sbjct: 241 DWFSFGSEPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGR 300

Query: 301 ELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVKPGEQWRGAQ 356
           ELFFRVIRMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTVKPGEQW+GAQ
Sbjct: 301 ELFFRVIRMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWKGAQ 340

[Close]

BLAST of Carg15409 vs. TAIR 10
Match: AT1G64770.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 414.8 bits (1065), Expect = 6.9e-116
Identity = 213/364 (58.52%), Postives = 265/364 (72.80%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQS 60
           MASL+    LPK   VR             SS+S   T  +  + L DKFGRKGI F +S
Sbjct: 1   MASLISFSLLPKPKAVR-------------SSISAPQTQTINTEKLEDKFGRKGIKFSES 60

Query: 61  NGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVI 120
           N IP V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI
Sbjct: 61  NNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVI 120

Query: 121 NDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVI 180
            +        S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++
Sbjct: 121 VNGEEPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALV 180

Query: 181 VKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAED 240
           VKN G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE 
Sbjct: 181 VKNNGRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAES 240

Query: 241 PDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQG 300
             W  FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQG
Sbjct: 241 SGW--FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQG 300

Query: 301 RELFFRVIRMGFEDIYVQSPGSLSDKFGKD-YFICTGPASMLVPVTVKPGEQWRGAQVIE 360
           R LFFR+IR+GFE++YV SPGS+ DK+GK  YF+CTGP SMLVPV V  GE WRGA VIE
Sbjct: 301 RGLFFRMIRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIE 348

Query: 361 HDNL 363
           HDNL
Sbjct: 361 HDNL 348

[Close]

BLAST of Carg15409 vs. TAIR 10
Match: AT1G64770.3 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 315.5 bits (807), Expect = 5.7e-86
Identity = 166/302 (54.97%), Postives = 213/302 (70.53%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQS 60
           MASL+    LPK   VR             SS+S   T  +  + L DKFGRKGI F +S
Sbjct: 1   MASLISFSLLPKPKAVR-------------SSISAPQTQTINTEKLEDKFGRKGIKFSES 60

Query: 61  NGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVI 120
           N IP V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI
Sbjct: 61  NNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVI 120

Query: 121 NDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVI 180
            +        S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++
Sbjct: 121 VNGEEPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALV 180

Query: 181 VKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAED 240
           VKN G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE 
Sbjct: 181 VKNNGRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAES 240

Query: 241 PDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQG 300
             W  FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQ 
Sbjct: 241 SGW--FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQK 286

Query: 301 RE 302
           ++
Sbjct: 301 KK 286

[Close]

BLAST of Carg15409 vs. TAIR 10
Match: AT1G64770.2 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 315.1 bits (806), Expect = 7.4e-86
Identity = 166/299 (55.52%), Postives = 211/299 (70.57%), Query Frame = 0


Query: 1   MASLVCLP-LPKLSIVRASSSSSSSSSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQS 60
           MASL+    LPK   VR             SS+S   T  +  + L DKFGRKGI F +S
Sbjct: 1   MASLISFSLLPKPKAVR-------------SSISAPQTQTINTEKLEDKFGRKGIKFSES 60

Query: 61  NGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVI 120
           N IP V+L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI
Sbjct: 61  NNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVD-GDESRGGVGVVI 120

Query: 121 NDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVI 180
            +        S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++
Sbjct: 121 VNGEEPKGGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALV 180

Query: 181 VKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAED 240
           VKN G K ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE 
Sbjct: 181 VKNNGRKPVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAES 240

Query: 241 PDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQ 299
             W  FGSE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQ
Sbjct: 241 SGW--FGSEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQ 283

[Close]

BLAST of Carg15409 vs. TAIR 10
Match: AT1G55370.2 (NDH-dependent cyclic electron flow 5 )

HSP 1 Score: 106.3 bits (264), Expect = 5.2e-23
Identity = 91/381 (23.88%), Postives = 160/381 (41.99%), Query Frame = 0


Query: 8   PLPKLSIVRASSSSSS-------------SSSSSSSSLSPSATSPLPADSLNDKFGRKGI 67
           PL + S +  SSS +S             SS   S+S S S   P+  + L  +F   G 
Sbjct: 15  PLSRSSKINLSSSFASLPLQFHKNIKRLESSVPPSASASASPAFPIDVEYLRREFSGHGA 74

Query: 68  HFHQSNGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVY----------WKDDGFEEVLFT 127
            F          L + NGSS  + ++   I SYK +V+          W +   EEV+  
Sbjct: 75  TFEDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEEEEVVI- 134

Query: 128 TPAANGGKGGIGLVINDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSS---KQM 187
                  +GG+      + +          SDW ++ +  D+ D +Q+EL  S    K++
Sbjct: 135 -------RGGVSSAFRSSDSD-------EISDWRLQGISGDSKDCVQMELRRSDKKIKEI 194

Query: 188 EITYIVTLYSESMATAVIVKNTGPKLLSLNS-AILSHFKFKRRDGAAIQGLEGCSYCSLP 247
           E+  I++L   +++  + + N G   + L   +++S+      +     GLEG  +    
Sbjct: 195 ELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEGSDFVETT 254

Query: 248 PLSSPFEILSPTEAMKAEDPDWFSFGSEPQEKAGSWSLQDVPFTILKNKFSRVYAAPPAE 307
           P    F ++                G + +EK G    ++  +  L  + SR+Y      
Sbjct: 255 PFLPRFGVVQ---------------GEKEEEKPGFGGEEESNYKQLNREMSRIYTC---- 314

Query: 308 RSKPVYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASML 362
                    P  +  +D+GR     V R GFE++Y+ SPGS  + + K  ++C GP+S+L
Sbjct: 315 --------APKSFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLL 353

[Close]

BLAST of Carg15409 vs. TAIR 10
Match: AT5G57330.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 4.5e-06
Identity = 25/76 (32.89%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 285 VYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSP-----GSLSDKFGKDY--FICTGPA 344
           +Y +TP+K   LD  ++  F + + G  D  V +P      ++SD   +DY   +C   A
Sbjct: 214 IYLSTPTKIAILDHEKKRTFVIRKDGLADAVVWNPWDKKSKTISDLGDEDYKHMLCVEAA 273

Query: 345 SMLVPVTVKPGEQWRG 354
           ++  P+T+KPGE+W+G
Sbjct: 274 AIERPITLKPGEEWKG 289

The following BLAST results are available for this feature:

BLAST of Carg15409 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029153.1	1.2e-202	100.00	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic, partial [Cucurbita ...	[more]
KAG6597706.1	5.9e-202	99.45	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic, partial [Cucurbita ...	[more]
XP_022932774.1	1.4e-198	98.07	photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita moschata]	[more]
XP_023540761.1	5.7e-197	97.24	photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita pepo subs...	[more]
XP_022972247.1	7.5e-197	97.79	photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg15409 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AQ8	9.7e-115	58.52	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thali...	[more]
Q9C503	7.4e-22	23.88	Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q40784	7.4e-06	34.21	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1	[more]

BLAST of Carg15409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXZ1	6.6e-199	98.07	photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1I4B2	3.6e-197	97.79	photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucurbita maxima ...	[more]
A0A1S3CQ42	2.9e-170	84.25	photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A0A0LCL5	6.4e-170	84.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G843790 PE=4 SV=1	[more]
A0A5A7U7W3	9.6e-166	83.94	Photosynthetic NDH subunit of subcomplex B 2 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Carg15409 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64770.1	6.9e-116	58.52	NDH-dependent cyclic electron flow 1	[more]
AT1G64770.3	5.7e-86	54.97	NDH-dependent cyclic electron flow 1	[more]
AT1G64770.2	7.4e-86	55.52	NDH-dependent cyclic electron flow 1	[more]
AT1G55370.2	5.2e-23	23.88	NDH-dependent cyclic electron flow 5	[more]
AT5G57330.1	4.5e-06	32.89	Galactose mutarotase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	2.70.98.10		coord: 62..362 e-value: 1.3E-23 score: 85.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..42
None	No IPR available	PANTHER	PTHR11122	APOSPORY-ASSOCIATED PROTEIN C-RELATED	coord: 26..362
None	No IPR available	PANTHER	PTHR11122:SF18	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 2, CHLOROPLASTIC	coord: 26..362
IPR011013	Galactose mutarotase-like domain superfamily	SUPERFAMILY	74650	Galactose mutarotase-like	coord: 54..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15409-RA	Carg15409-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0097552	mitochondrial double-strand break repair via homologous recombination
biological_process	GO:0007095	mitotic G2 DNA damage checkpoint signaling
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0030870	Mre11 complex
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0047938	glucose-6-phosphate 1-epimerase activity
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0000014	single-stranded DNA endodeoxyribonuclease activity
molecular_function	GO:0003824	catalytic activity