Carg15404 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15404
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 9614929 .. 9617658 (-)
RNA-Seq ExpressionCarg15404
SyntenyCarg15404
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATCGTATTCTGCGGAAGCTGAAACAGAAAGCAAGAATGAGAACGGTCAGGTGCTCGCCATCAATGAGGTAAGTGTTTTTTTCCACGTCACTTTTCTGTTAGAAGGTCTAAAATGTTATGCCGCAGTAGTGTTTATCCGATCGAACATTGGTAAAATTGATGGACTGCGTGTCTGCTATTCATCATGCACCGATCTGAACTATTGCTGCTTTGCTCTTTGTAAACTGTTTGCCATGATTACTTGTGTTCAGTGCTTTATCCCTTCTGATGCCGGTAGTGATACTCGAGCGGGGTTTCTTTGTCCTTTGAATTGTTTATAGTTATTGTCCATTGTGAGCGTAAATGTTGAAGAACTTAGTTGTGGGGATGAGAAATTGTGGGTGTATTTCTCGTGTTTTGTTCTTGTATATCGTAGATCTGATGTCAAATATCCAACAATCTCCGACTTAATGAATTTGTGATGCTTTTTGAATCGTGCGAATCTGTAATATCGAGAAAAATTATCAGGCCGTATTGATGAAATATGATTTGATGGTGTCGTATGGGGGAAGTGTTCCTCTGTGATTGCAATGGATATCTTGGTGTACGAAGTTTCATCAAATGGTGATTTTTTCCATCAATTTGTGTTACCCATAGCTATTTTCTGGAGTTGGGTTGCTGAAGTCTAACATGGATAGGTACGATTCACTAGCTATAGTATTCAGTTGGGATTTTCTAATGGATCCGTCATTGTCTTCAAGATCTTTGAGAAGAATCCAACGAAAGATCAAGAACTATGGTAATTCTGGTTGCGTTACCAAGTCGCTACGGGTATTTATACAAGATGTACAACAAATAAGGATACCCCAGTGAATGAACCAGAGAACCCATTTAAACGTGAGCTCGTGGCACACGCATGTACCACCGACAATGGCTTCTCCGGTCACAGGTCAGTCTCCTGTGCATCCAAATCATCAAGCACGCACCGGTCCCTGCTAAGCTTGCAAAGCCAGGTAAAGCACCAAGCATTCACGACTCCAAGAATCAAGTCCCTTTGGCTGTTCAGGACTGTTAGGCAGACAGTCCACACCTAAAAAAAGGCTGAAGACAACTTTACAAGGCTTCAAAAGGGTCAGTTCCCCCCCCCCCGAACGCCCTATAAGTAAGTTATTTATGTATTTTTATTATAATTGACTGTTTAGAGGAATTGAGAAAAAGCTACCAGAGGTTGTTTATTTGAAATCTTACTTTATGACCTCTTTATCAGCTGTTTCTTCAACGCGTCTTTTCATTTCTATATATTATGGACTCAGACATTAATTTTTTGGGTTAGTCACCATTTTGTTTCTTATGGAAGTGCTCAGCGCCATTATAGTCTATGATTCTCATATTGCCCTCTAATACTTGTGTCTGCATCACTGTGTGGCTATCCAGCGTAACGTCGAATGCATGGACACGTAATGCTGAAATCCTGTGTCGGTTTATGCGACTGGCCCATCGCTCAAATTTCCAACTTGTGGGTCTTGAAATATTCTTTTAATGATTCCGGTAATTCAATTTAAACCATTGTAACATAGATGTTATGTTTAATTTAGTCTTGCCAACTGCTCGGTGGTTTGGTTTGAGATTGTATTCTGTAATATCTCAAAGTTATATTCTCAATTTCAAATTGCTACATAGATTTGTCTTTTTTTTTTATTGTTTATACATCGGTTATTATCTCGACGTTCCATCTATTAGGTTCGTTCACACACTCTCCAACTACTCAAATAGTTATTAGATTACGACATTCCCTACTAGATTTTAGAATAGAGAATCCCTAGGAATCTTACCCATAAAATTTCCTAAATTATTTATCTAATGTTAGTGTGCATATCAATTTTTCAATAGAATTTCTAAATTTTCATCAATTTCTAAATTAACTATTTAGATTTTTTCGGAACACCATTTCCCCCATAAATTTTTTGTAAATCACTAACTTGAGTGTAAGATGTTAGAAGATATATGTTATTCATCCATAGATCATTCCAAGGAACTAAAATAATGTATACTTCCGTTAATTTATTAAATTTGAATTTTTCGTTACTCTAAACAAGTCATTTTAGGTCAATTTCGAATTGTAATCTTCTAACGATTATAAATCATGATATTTCTAAATTTATGTGCATATAATAATATATATATAATAATAATTAATATACCATAGGGCGGAATTTAACCGAGGTAGGGTTTAAGTTTGAGCTCCCACCTCACGGCCCGAGAATCATCGGCGAACTAATAACGGTTTGAGAACATCAGAAGTACAGATTGAAAGGAGGCGAGCACGATCGGGTTCACCTCCGACTTCGCAGAGAACAAGAATCTAAACACGTAGGGCATCTGAATTCCTCATCATTTTTCTCTCTTCGATTGCTCTCTCCACCATTACTGAAGAAGATGGCGAGAGAGGGAAAGACGAGAGAGGGCTGGATTGTAGAATCGCTGGATGGCTGACGGAGGTCTTCGATCGTGCCGAAAAAGAGCAACAAGGCCATAGCTGGTGTCGGGCGCACTTCAATCATGAGCTCAAGGCTCACCTCTACAAAGTCTTCAAAGAGAGTCCAAGAGTCCAAGGAATGGCTGGCCCCGACCGTCGGTTTCCACCGTGCGAAGAAGAGATTACTCCCAGACCATTCTCAGTCCTCCACACATTCCGGCGTCGCAGCACGCCAAAAACGCTCTCTCAGTATGTTTTCGATTTCTCTCTTTAG

mRNA sequence

ATATCGTATTCTGCGGAAGCTGAAACAGAAAGCAAGAATGAGAACGGTCAGGTGCTCGCCATCAATGAGTGCTTTATCCCTTCTGATGCCGGTAGTGATACTCGAGCGGGCTATAGTATTCAGTTGGGATTTTCTAATGGATCCGTCATTGTCTTCAAGATCTTTGAGAAGAATCCAACGAAAGATCAAGAACTATGGGCATCTGAATTCCTCATCATTTTTCTCTCTTCGATTGCTCTCTCCACCATTACTGAAGAAGATGGCGAGAGAGGGAAAGACGAGAGAGGGCTGGATTGTAGAATCGCTGGATGGCTGACGGAGGTCTTCGATCGTGCCGAAAAAGAGCAACAAGGCCATAGCTGGTGTCGGGCGCACTTCAATCATGAGCTCAAGGCTCACCTCTACAAAGTCTTCAAAGAGAGTCCAAGAGTCCAAGGAATGGCTGGCCCCGACCGTCGGTTTCCACCGTGCGAAGAAGAGATTACTCCCAGACCATTCTCAGTCCTCCACACATTCCGGCGTCGCAGCACGCCAAAAACGCTCTCTCAGTATGTTTTCGATTTCTCTCTTTAG

Coding sequence (CDS)

ATATCGTATTCTGCGGAAGCTGAAACAGAAAGCAAGAATGAGAACGGTCAGGTGCTCGCCATCAATGAGTGCTTTATCCCTTCTGATGCCGGTAGTGATACTCGAGCGGGCTATAGTATTCAGTTGGGATTTTCTAATGGATCCGTCATTGTCTTCAAGATCTTTGAGAAGAATCCAACGAAAGATCAAGAACTATGGGCATCTGAATTCCTCATCATTTTTCTCTCTTCGATTGCTCTCTCCACCATTACTGAAGAAGATGGCGAGAGAGGGAAAGACGAGAGAGGGCTGGATTGTAGAATCGCTGGATGGCTGACGGAGGTCTTCGATCGTGCCGAAAAAGAGCAACAAGGCCATAGCTGGTGTCGGGCGCACTTCAATCATGAGCTCAAGGCTCACCTCTACAAAGTCTTCAAAGAGAGTCCAAGAGTCCAAGGAATGGCTGGCCCCGACCGTCGGTTTCCACCGTGCGAAGAAGAGATTACTCCCAGACCATTCTCAGTCCTCCACACATTCCGGCGTCGCAGCACGCCAAAAACGCTCTCTCAGTATGTTTTCGATTTCTCTCTTTAG

Protein sequence

ISYSAEAETESKNENGQVLAINECFIPSDAGSDTRAGYSIQLGFSNGSVIVFKIFEKNPTKDQELWASEFLIIFLSSIALSTITEEDGERGKDERGLDCRIAGWLTEVFDRAEKEQQGHSWCRAHFNHELKAHLYKVFKESPRVQGMAGPDRRFPPCEEEITPRPFSVLHTFRRRSTPKTLSQYVFDFSL
Homology
[Close]
BLAST of Carg15404 vs. NCBI nr
Match: KAG7034704.1 (hypothetical protein SDJN02_04434, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.4 bits (1012), Expect = 5.4e-106
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   ISYSAEAETESKNENGQVLAINECFIPSDAGSDTRAGYSIQLGFSNGSVIVFKIFEKNPT 60
           ISYSAEAETESKNENGQVLAINECFIPSDAGSDTRAGYSIQLGFSNGSVIVFKIFEKNPT
Sbjct: 1   ISYSAEAETESKNENGQVLAINECFIPSDAGSDTRAGYSIQLGFSNGSVIVFKIFEKNPT 60

Query: 61  KDQELWASEFLIIFLSSIALSTITEEDGERGKDERGLDCRIAGWLTEVFDRAEKEQQGHS 120
           KDQELWASEFLIIFLSSIALSTITEEDGERGKDERGLDCRIAGWLTEVFDRAEKEQQGHS
Sbjct: 61  KDQELWASEFLIIFLSSIALSTITEEDGERGKDERGLDCRIAGWLTEVFDRAEKEQQGHS 120

Query: 121 WCRAHFNHELKAHLYKVFKESPRVQGMAGPDRRFPPCEEEITPRPFSVLHTFRRRSTPKT 180
           WCRAHFNHELKAHLYKVFKESPRVQGMAGPDRRFPPCEEEITPRPFSVLHTFRRRSTPKT
Sbjct: 121 WCRAHFNHELKAHLYKVFKESPRVQGMAGPDRRFPPCEEEITPRPFSVLHTFRRRSTPKT 180

Query: 181 LSQYVFDFSL 191
           LSQYVFDFSL
Sbjct: 181 LSQYVFDFSL 190

The following BLAST results are available for this feature:
BLAST of Carg15404 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034704.15.4e-106100.00hypothetical protein SDJN02_04434, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15404 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15404 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15404 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15404-RACarg15404-RAmRNA