Carg15370 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15370
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclic phosphodiesterase-like
Location	Carg_Chr03: 9470291 .. 9471685 (+)
RNA-Seq Expression	Carg15370
Synteny	Carg15370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACCCAGAATCCACCCCTATCCAACCCTCTGAAGGGGAGAAGAACGTGTATTCGGTCTGGGCTCTTCCTCCAGAAGATGTTACGGCCAGAATCAGGACTCTCATGAACAGCCTCAGATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACTGTCGTTGGGGCTATTCGTCTCACCCTTGACGATGCCCTCAACAAATTTCGCTCGGCTTGCGAGGGGCTTAAGGCTTATCAAGCCACCGTCGATTGTGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTCAGGTTCTTCCCTCTGTTCTTTATTTTACCTCCTTTTCTCTGTTTGATCGTTCTCTCACTCCCCCTTTTCTTCTTCTCAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTGCAACAACTCTACCCGTAAGATCCAGTTCTCTTGCGTTAATTTCTTGTTTTTTCCATTTTTTTTTCTTTCAAAAGATATCTTATTCATAGTTTGTTGATTGTTAAATTGAATCATGAATCACATTCAAAATGGTAAACTTAGCTCTGTTTTTCCCTTCCCTCAGATTGTTATGAACATACAGTAGACTTTGATATCTCTGGGTCGGCGTATGTGTTTCTAGACTAAGATTACAGGATGAACATTCGGATTTTACGTATTGGGTATTAGAAAACTCTTAGGATTTGGTAAATCAATGGGTCAAGCTAGGCCTTGGAAAAGAAGTTTTGATAAACTTGTTGGTATTATCCATCTTGTTGGTGCTACTGATGCCAATTATCTGCAAAATTGTCTCGTAAGCAGTCCAAGTAGTTGAGCTAAATTTCTTCTTTACAATCAAATGACAATAGAAACGGATTAGCCATATGAAAGTAAATGCAAGCCTGTTGTCAAATTCAAGATGTTTAAGCAATGAATCAAAGAACTATGCTCGATTCGGTTATCTAACGAGGATGCTTCTCGAATCTCAACTAATAATATGAATGTCATGTCTGTATCAGCTTACATGCCGCATTTGAGCCTTCTGTATGCCAACATATCAGATGAACAAAAGAAGCAGGCAAAAGAACTAGCAGAGAAGCTGGACGAAGCCATTAATGGCCTGAGCTTCCCCATCACTCGTCTTGCACTATACAAAACAGACACTGGAGATGAAACTCTGAAGTCCTGGGAGAAAATTGCAGAACAGGATCTTCCTTCAAGTTAATAAGCTTCTGTTTATATCTATACACCCCATGAACACTGTTCTTTTGGACAATGTCTGTACTCCTCTGTACTTGTTAACTGGTAAAAATAAATAAATGTCAGCTGAAGGCATTACTATTTTATTCTTGTAAAAGAGAATTAATTTATTATCTAATATA

mRNA sequence

ATGGCGAACCCAGAATCCACCCCTATCCAACCCTCTGAAGGGGAGAAGAACGTGTATTCGGTCTGGGCTCTTCCTCCAGAAGATGTTACGGCCAGAATCAGGACTCTCATGAACAGCCTCAGATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACTGTCGTTGGGGCTATTCGTCTCACCCTTGACGATGCCCTCAACAAATTTCGCTCGGCTTGCGAGGGGCTTAAGGCTTATCAAGCCACCGTCGATTGTGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTCAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTGCAACAACTCTACCCCTTACATGCCGCATTTGAGCCTTCTGTATGCCAACATATCAGATGAACAAAAGAAGCAGGCAAAAGAACTAGCAGAGAAGCTGGACGAAGCCATTAATGGCCTGAGCTTCCCCATCACTCGTCTTGCACTATACAAAACAGACACTGGAGATGAAACTCTGAAGTCCTGGGAGAAAATTGCAGAACAGGATCTTCCTTCAAGTTAATAAGCTTCTGTTTATATCTATACACCCCATGAACACTGTTCTTTTGGACAATGTCTGTACTCCTCTGTACTTGTTAACTGGTAAAAATAAATAAATGTCAGCTGAAGGCATTACTATTTTATTCTTGTAAAAGAGAATTAATTTATTATCTAATATA

Coding sequence (CDS)

ATGGCGAACCCAGAATCCACCCCTATCCAACCCTCTGAAGGGGAGAAGAACGTGTATTCGGTCTGGGCTCTTCCTCCAGAAGATGTTACGGCCAGAATCAGGACTCTCATGAACAGCCTCAGATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACTGTCGTTGGGGCTATTCGTCTCACCCTTGACGATGCCCTCAACAAATTTCGCTCGGCTTGCGAGGGGCTTAAGGCTTATCAAGCCACCGTCGATTGTGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTCAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTGCAACAACTCTACCCCTTACATGCCGCATTTGAGCCTTCTGTATGCCAACATATCAGATGAACAAAAGAAGCAGGCAAAAGAACTAGCAGAGAAGCTGGACGAAGCCATTAATGGCCTGAGCTTCCCCATCACTCGTCTTGCACTATACAAAACAGACACTGGAGATGAAACTCTGAAGTCCTGGGAGAAAATTGCAGAACAGGATCTTCCTTCAAGTTAA

Protein sequence

MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

Homology

[Close]

BLAST of Carg15370 vs. NCBI nr
Match: KAG7034670.1 (Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 3.8e-107
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
           NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS
Sbjct: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. NCBI nr
Match: KAG6581386.1 (Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.1e-105
Identity = 190/192 (98.96%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTKVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
           NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS
Sbjct: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. NCBI nr
Match: XP_023543945.1 (cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. NCBI nr
Match: XP_023522563.1 (cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo] >XP_023543944.1 cyclic phosphodiesterase-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.3 bits (996), Expect = 3.9e-104
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPT +VVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTIEVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. NCBI nr
Match: XP_022978766.1 (cyclic phosphodiesterase-like [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 2.0e-103
Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPES  IQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESPTIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFP+TRLALYKTDTGDETLKS
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. ExPASy Swiss-Prot
Match: O04147 (Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-56
Identity = 102/173 (58.96%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 13  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRS 72
           E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F S
Sbjct: 3   EVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFES 62

Query: 73  ACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGCNNSTPYMPHLSL 132
           AC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   HC  HF C+ +TPYMPHLSL
Sbjct: 63  ACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL 122

Query: 133 LYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA 186
           LYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Sbjct: 123 LYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Carg15370 vs. ExPASy TrEMBL
Match: A0A6J1INY2 (cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111478628 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.5e-104
Identity = 187/192 (97.40%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPES  IQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESPTIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFP+TRLALYKTDTGDETLKS
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 192

[Close]

BLAST of Carg15370 vs. ExPASy TrEMBL
Match: A0A6J1EGC1 (cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433116 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.1e-103
Identity = 188/192 (97.92%), Postives = 188/192 (97.92%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFG 
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            N TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS
Sbjct: 121 KN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAEQDLPSS
Sbjct: 181 WEKIAEQDLPSS 191

[Close]

BLAST of Carg15370 vs. ExPASy TrEMBL
Match: A0A6J1KNB2 (cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111496852 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.3e-88
Identity = 159/192 (82.81%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIR
Sbjct: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLLIHPTT+VV+ SSHCCGHFGC
Sbjct: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGC 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
           NNSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKS
Sbjct: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPLTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAE DLPSS
Sbjct: 181 WEKIAEHDLPSS 190

[Close]

BLAST of Carg15370 vs. ExPASy TrEMBL
Match: A0A1S3AYZ1 (cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.2e-87
Identity = 159/192 (82.81%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           M NPES  IQ SE E NVYSVWALPPEDV+ARI  LMNSLRSEFGGPQFEPHITVVGAIR
Sbjct: 1   MVNPESASIQSSEEETNVYSVWALPPEDVSARIENLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LT +DALNKF +AC+G+KAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSH C HFG 
Sbjct: 61  LTAEDALNKFLTACQGIKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHFCKHFGF 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
            NSTPYMPH+SLLYA+ISDE+KKQAKE+A+KLDEA+NGL FPITRLAL+KTDT DETLKS
Sbjct: 121 KNSTPYMPHMSLLYAHISDEKKKQAKEIADKLDEAVNGLKFPITRLALWKTDTSDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKI E DL SS
Sbjct: 181 WEKIVEHDLSSS 192

[Close]

BLAST of Carg15370 vs. ExPASy TrEMBL
Match: A0A6J1EEQ8 (cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433501 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 158/192 (82.29%), Postives = 173/192 (90.10%), Query Frame = 0


Query: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60
           MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIR
Sbjct: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIR 60

Query: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGC 120
           LT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLLIHPTT+VV+ SSHCCGHFG 
Sbjct: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGY 120

Query: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180
           NNSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKS
Sbjct: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEQDLPSS 193
           WEKIAE DLPSS
Sbjct: 181 WEKIAEHDLPSS 190

[Close]

BLAST of Carg15370 vs. TAIR 10
Match: AT4G18930.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-57
Identity = 102/173 (58.96%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 13  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRS 72
           E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F S
Sbjct: 3   EVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFES 62

Query: 73  ACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGCNNSTPYMPHLSL 132
           AC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   HC  HF C+ +TPYMPHLSL
Sbjct: 63  ACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL 122

Query: 133 LYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA 186
           LYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Sbjct: 123 LYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Carg15370 vs. TAIR 10
Match: AT4G18940.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 171.4 bits (433), Expect = 7.0e-43
Identity = 85/199 (42.71%), Postives = 126/199 (63.32%), Query Frame = 0


Query: 1   MANPESTPIQP------SEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHIT 60
           M    +TP+QP       E EK +Y++WA+P +DV  R++ LM  LRSEFGGP F+PH+T
Sbjct: 1   MTEENATPLQPPQTQEDDEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLT 60

Query: 61  VVGAI--RLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS 120
           +VG    +LT  +A   F+SACEG K Y ATVD VS GT ++QC+++ +  T +V+  + 
Sbjct: 61  LVGPFPYKLTASEAKRMFKSACEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAG 120

Query: 121 HCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTD 180
           H   HF       Y+PH+S+LY ++++ +KK+A E A  LD +++GL+F I R+AL+ TD
Sbjct: 121 HFMAHFKPFTGKFYVPHMSILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITD 180

Query: 181 TGDETLKSWEKIAEQDLPS 192
                + SW K+ E  L S
Sbjct: 181 A---DVGSWVKVDEHTLIS 196

The following BLAST results are available for this feature:

BLAST of Carg15370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034670.1	3.8e-107	100.00	Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6581386.1	2.1e-105	98.96	Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023543945.1	3.6e-105	98.96	cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023522563.1	3.9e-104	97.92	cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo] >XP_023543944.1 cycli...	[more]
XP_022978766.1	2.0e-103	97.40	cyclic phosphodiesterase-like [Cucurbita maxima]	[more]

BLAST of Carg15370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04147	2.4e-56	58.96	Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1	[more]

BLAST of Carg15370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INY2	9.5e-104	97.40	cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111478628 PE=4 S...	[more]
A0A6J1EGC1	6.1e-103	97.92	cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433116 PE=4...	[more]
A0A6J1KNB2	7.3e-88	82.81	cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111496852 PE=4 S...	[more]
A0A1S3AYZ1	6.2e-87	82.81	cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1	[more]
A0A6J1EEQ8	1.1e-86	82.29	cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433501 PE=4...	[more]

BLAST of Carg15370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18930.1	1.7e-57	58.96	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT4G18940.1	7.0e-43	42.71	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 135..158
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 12..191 e-value: 9.3E-56 score: 190.3
None	No IPR available	PANTHER	PTHR28141:SF4	CYCLIC PHOSPHODIESTERASE-LIKE	coord: 15..189
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PIRSF	PIRSF017903	CPDase_plant	coord: 1..191 e-value: 5.6E-71 score: 236.2
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PFAM	PF07823	CPDase	coord: 20..181 e-value: 7.1E-12 score: 45.4
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PANTHER	PTHR28141	2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE	coord: 15..189
IPR009097	Cyclic phosphodiesterase	SUPERFAMILY	55144	LigT-like	coord: 16..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15370-RA	Carg15370-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009187	cyclic nucleotide metabolic process
molecular_function	GO:0004113	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
molecular_function	GO:0004112	cyclic-nucleotide phosphodiesterase activity