Carg15356 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15356
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ras-related protein RABA1c-like
Location	Carg_Chr03: 9420725 .. 9421404 (-)
RNA-Seq Expression	Carg15356
Synteny	Carg15356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGCCCATTAATGCTAATATCCTGGATGTTCTGCAGCTAAGATTTATGTTTAGTGTCTTGTTTATCGGGAAAAAGTGGCCCAATTCTGTTTTCAACGAGTGAGGGATGGTCATAAAAGATAGTTTAGAGTGAACGTACCTGTATGACAGAGTTTAGACTTAGTTTCATCTTAAAATCTGCACTTGCTTTACTTTGCCACATCTCTCGTCTCTGTCACCTTAACTCCTCAAGTTCACAGGTATAGAGCGATTACGAGTGCTTACTATCGAGGAGCTGTTGGTGCCCTGATTGTGTACGACGTTACACGACATTCCACATATGAAAATGTTGAGAAATGGTTAAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAATAATGCTAGTTGGCAACAAATCAGATCTTCGCCACCTTGTGGCAGTCTCAACTGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTACTTCATGGAAACCTCTGCTCTTGAAGCCATGAACGTGGACAACGCCTTTGCTGAAGTGCTTACACAAATTTACCATATAGTGAGCAAGAAGGCTATGGATGCTAGCGACGACGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATTGATATCAGTAAGGACGTCTCCGAGGTCAAGAAAGGCGGTTGCTGTTCCAGCTAA

mRNA sequence

ATGACAGAGCCCATTAATGCTAATATCCTGGATGTTCTGCAGCTAAGATTTATGTTTAGTGTCTTGTTTATCGGGAAAAAGTGGCCCAATTCTGTTTTCAACGAGTATAGAGCGATTACGAGTGCTTACTATCGAGGAGCTGTTGGTGCCCTGATTGTGTACGACGTTACACGACATTCCACATATGAAAATGTTGAGAAATGGTTAAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAATAATGCTAGTTGGCAACAAATCAGATCTTCGCCACCTTGTGGCAGTCTCAACTGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTACTTCATGGAAACCTCTGCTCTTGAAGCCATGAACGTGGACAACGCCTTTGCTGAAGTGCTTACACAAATTTACCATATAGTGAGCAAGAAGGCTATGGATGCTAGCGACGACGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATTGATATCAGTAAGGACGTCTCCGAGGTCAAGAAAGGCGGTTGCTGTTCCAGCTAA

Coding sequence (CDS)

ATGACAGAGCCCATTAATGCTAATATCCTGGATGTTCTGCAGCTAAGATTTATGTTTAGTGTCTTGTTTATCGGGAAAAAGTGGCCCAATTCTGTTTTCAACGAGTATAGAGCGATTACGAGTGCTTACTATCGAGGAGCTGTTGGTGCCCTGATTGTGTACGACGTTACACGACATTCCACATATGAAAATGTTGAGAAATGGTTAAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAATAATGCTAGTTGGCAACAAATCAGATCTTCGCCACCTTGTGGCAGTCTCAACTGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTACTTCATGGAAACCTCTGCTCTTGAAGCCATGAACGTGGACAACGCCTTTGCTGAAGTGCTTACACAAATTTACCATATAGTGAGCAAGAAGGCTATGGATGCTAGCGACGACGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATTGATATCAGTAAGGACGTCTCCGAGGTCAAGAAAGGCGGTTGCTGTTCCAGCTAA

Protein sequence

MTEPINANILDVLQLRFMFSVLFIGKKWPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDASDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS

Homology

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BLAST of Carg15356 vs. NCBI nr
Match: KAG7034656.1 (Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MTEPINANILDVLQLRFMFSVLFIGKKWPNSVFNEYRAITSAYYRGAVGALIVYDVTRHS 60
           MTEPINANILDVLQLRFMFSVLFIGKKWPNSVFNEYRAITSAYYRGAVGALIVYDVTRHS
Sbjct: 1   MTEPINANILDVLQLRFMFSVLFIGKKWPNSVFNEYRAITSAYYRGAVGALIVYDVTRHS 60

Query: 61  TYENVEKWLKELRDHTDPNIVIMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALE 120
           TYENVEKWLKELRDHTDPNIVIMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALE
Sbjct: 61  TYENVEKWLKELRDHTDPNIVIMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALE 120

Query: 121 AMNVDNAFAEVLTQIYHIVSKKAMDASDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           AMNVDNAFAEVLTQIYHIVSKKAMDASDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS
Sbjct: 121 AMNVDNAFAEVLTQIYHIVSKKAMDASDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 179

[Close]

BLAST of Carg15356 vs. NCBI nr
Match: XP_022926120.1 (ras-related protein RABA1c-like [Cucurbita moschata] >XP_022978763.1 ras-related protein RABA1c-like [Cucurbita maxima] >XP_023544519.1 ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG6581369.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. NCBI nr
Match: XP_038892728.1 (ras-related protein RABA1c-like [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 7.7e-70
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+A+
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMEAN 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. NCBI nr
Match: XP_004134652.1 (ras-related protein RABA1c [Cucumis sativus] >XP_008439722.1 PREDICTED: ras-related protein RABA1c-like [Cucumis melo] >ADN34029.1 GTP-binding protein [Cucumis melo subsp. melo] >KAA0052607.1 ras-related protein RABA1c [Cucumis melo var. makuwa] >KGN49321.1 hypothetical protein Csa_002721 [Cucumis sativus] >TYK13220.1 ras-related protein RABA1c [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-69
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+ +
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMETN 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAV+AKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. NCBI nr
Match: XP_022142300.1 (ras-related protein RABA1c [Momordica charantia])

HSP 1 Score: 271.9 bits (694), Expect = 3.8e-69
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+AS
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMEAS 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAV+AKGEKIDISKDVS VKKGGCCSS
Sbjct: 187 DDAAASAVVAKGEKIDISKDVSAVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHST+ENVE WLKELR+HTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV TEDAKSFAE ESLYFMETSALEA NV+NAFAEVLTQI+HIVSKKAM+A+
Sbjct: 127 KSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAA 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
            ++A   V +KG+KIDI KDVS VKKGGCCS+
Sbjct: 187 SESA--NVPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of Carg15356 vs. ExPASy Swiss-Prot
Match: Q9SN35 (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-59
Identity = 117/152 (76.97%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHST+ENVE+WL+ELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV TEDAKSFAE ESLYFMETSALE+ NV+NAF+EVLTQIYH+VSKKAM+A 
Sbjct: 127 KSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAG 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           +D  +  V +KGEKID+  DVS VKK GCCS+
Sbjct: 187 ED--SGNVPSKGEKIDV--DVSAVKKTGCCSN 214

[Close]

BLAST of Carg15356 vs. ExPASy Swiss-Prot
Match: P40393 (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-58
Identity = 114/151 (75.50%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHST+ENVE+WLKELRDHTDPNIV+MLVGN
Sbjct: 68  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV T++ K+FAE ESLYFMETSALE+ NV+NAFAEVLTQIY IVSK++++A 
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAG 187

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCS 179
           DDA +     KGEKI+I  DVS VKKGGCCS
Sbjct: 188 DDAGSGP--GKGEKINIKDDVSAVKKGGCCS 216

[Close]

BLAST of Carg15356 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.3e-55
Identity = 109/152 (71.71%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRH TYENV +WLKELRDHTDPNIV+ML+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVST++AK  AE E LYFMETSALEA NV+NAF E LTQIY IVSKKA++A 
Sbjct: 127 KSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAG 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           D+ A S+   KGE I+I  + S  KK GCCSS
Sbjct: 187 DEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.5e-55
Identity = 105/152 (69.08%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTR +T+EN  +WLKELRDHTDPNIV+ML+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV TED KSFAE ESLYFMETSALEA NV+NAF EVLTQIY IVSK+A++A 
Sbjct: 127 KSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAG 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           D  ++S + +KG+ I++ +D S +K+ GCCS+
Sbjct: 187 DSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218

[Close]

BLAST of Carg15356 vs. ExPASy TrEMBL
Match: A0A6J1IU78 (ras-related protein RABA1c-like OS=Cucurbita maxima OX=3661 GN=LOC111478625 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.2e-72
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy TrEMBL
Match: A0A6J1EK42 (ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433325 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.2e-72
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy TrEMBL
Match: A0A5D3CP64 (Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008350 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+ +
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMETN 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAV+AKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy TrEMBL
Match: E5GC30 (GTP-binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+ +
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMETN 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAV+AKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. ExPASy TrEMBL
Match: A0A0A0KNM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519720 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHSTYENVEKWLKELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAVSTEDAKSFAETESLYFMETSALEA NVDNAFAEVLTQIYHIVSKKAM+ +
Sbjct: 127 KSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAMETN 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           DDAAASAV+AKGEKIDISKDVSEVKKGGCCSS
Sbjct: 187 DDAAASAVIAKGEKIDISKDVSEVKKGGCCSS 218

[Close]

BLAST of Carg15356 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-62
Identity = 121/152 (79.61%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHST+ENVE WLKELR+HTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV TEDAKSFAE ESLYFMETSALEA NV+NAFAEVLTQI+HIVSKKAM+A+
Sbjct: 127 KSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAA 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
            ++A   V +KG+KIDI KDVS VKKGGCCS+
Sbjct: 187 SESA--NVPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of Carg15356 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D )

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-60
Identity = 117/152 (76.97%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRHST+ENVE+WL+ELRDHTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHLVAV TEDAKSFAE ESLYFMETSALE+ NV+NAF+EVLTQIYH+VSKKAM+A 
Sbjct: 127 KSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAG 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           +D  +  V +KGEKID+  DVS VKK GCCS+
Sbjct: 187 ED--SGNVPSKGEKIDV--DVSAVKKTGCCSN 214

[Close]

BLAST of Carg15356 vs. TAIR 10
Match: AT1G28550.1 (RAB GTPase homolog A1I )

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-54
Identity = 107/154 (69.48%), Postives = 127/154 (82.47%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRH T+ENVE+WLKELRDHTD NIVIMLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           K+DLRHL A+STE+AK+FAE E+ +FMETSALEA+NVDNAF EVLTQIY +VSKKA++A 
Sbjct: 127 KADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAG 186

Query: 148 DDAAASAVLAKGEKIDIS--KDVSEVKKGGCCSS 180
           DD   +  L KG+ I++    D+S VKK GCCS+
Sbjct: 187 DD--PTTALPKGQMINVGGRDDISAVKKPGCCSA 218

[Close]

BLAST of Carg15356 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B )

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-54
Identity = 106/152 (69.74%), Postives = 127/152 (83.55%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTR +T+ENV++WLKEL++HTDPNIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           KSDLRHL+AV TED KS+AE ESL FMETSALEA NV++AFAEVLTQIY I SKK ++A 
Sbjct: 127 KSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAG 186

Query: 148 DDAAASAVLAKGEKIDISKDVSEVKKGGCCSS 180
           +D  AS  + KGEKI++  DVS +KK GCCS+
Sbjct: 187 EDGNAS--VPKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of Carg15356 vs. TAIR 10
Match: AT3G15060.1 (RAB GTPase homolog A1G )

HSP 1 Score: 208.8 bits (530), Expect = 3.7e-54
Identity = 108/154 (70.13%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 28  WPNSVFNEYRAITSAYYRGAVGALIVYDVTRHSTYENVEKWLKELRDHTDPNIVIMLVGN 87
           W  +    YRAITSAYYRGAVGAL+VYDVTRH T+ENVE+WLKELRDHT+ NIVIMLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIVIMLVGN 126

Query: 88  KSDLRHLVAVSTEDAKSFAETESLYFMETSALEAMNVDNAFAEVLTQIYHIVSKKAMDAS 147
           K+DLRHL AVSTEDAK+FAE E+ +FMETSALEA+NV+NAF EVL+QIY + SKKA+D  
Sbjct: 127 KADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASKKALDIG 186

Query: 148 DDAAASAVLAKGEKIDISK--DVSEVKKGGCCSS 180
           DD      L KG+ I++    DVSEVKK GCCSS
Sbjct: 187 DD---HTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

The following BLAST results are available for this feature:

BLAST of Carg15356 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034656.1	2.5e-92	100.00	Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022926120.1	1.1e-71	95.39	ras-related protein RABA1c-like [Cucurbita moschata] >XP_022978763.1 ras-related...	[more]
XP_038892728.1	7.7e-70	92.11	ras-related protein RABA1c-like [Benincasa hispida]	[more]
XP_004134652.1	3.8e-69	90.79	ras-related protein RABA1c [Cucumis sativus] >XP_008439722.1 PREDICTED: ras-rela...	[more]
XP_022142300.1	3.8e-69	91.45	ras-related protein RABA1c [Momordica charantia]	[more]

BLAST of Carg15356 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK68	3.1e-61	79.61	Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1	[more]
Q9SN35	3.7e-59	76.97	Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1	[more]
P40393	1.9e-58	75.50	Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 S...	[more]
Q01111	4.3e-55	71.71	Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1	[more]
Q40194	9.5e-55	69.08	Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1	[more]

BLAST of Carg15356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IU78	5.2e-72	95.39	ras-related protein RABA1c-like OS=Cucurbita maxima OX=3661 GN=LOC111478625 PE=4...	[more]
A0A6J1EK42	5.2e-72	95.39	ras-related protein RABA1c-like OS=Cucurbita moschata OX=3662 GN=LOC111433325 PE...	[more]
A0A5D3CP64	1.9e-69	90.79	Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
E5GC30	1.9e-69	90.79	GTP-binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0KNM1	1.9e-69	90.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519720 PE=4 SV=1	[more]

BLAST of Carg15356 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45750.1	2.2e-62	79.61	RAB GTPase homolog A1C	[more]
AT4G18800.1	2.7e-60	76.97	RAB GTPase homolog A1D	[more]
AT1G28550.1	2.2e-54	69.48	RAB GTPase homolog A1I	[more]
AT1G16920.1	2.2e-54	69.74	RAB GTPase homolog A1B	[more]
AT3G15060.1	3.7e-54	70.13	RAB GTPase homolog A1G	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 113..135 score: 39.85 coord: 78..91 score: 56.59
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 23..138 e-value: 1.6E-6 score: -17.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 19..138 e-value: 1.1E-40 score: 151.2
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 27..179
None	No IPR available	PANTHER	PTHR24073:SF1066	RAS-RELATED PROTEIN RABA1D	coord: 27..179
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..177 score: 20.232477
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 21..134 e-value: 7.0E-5 score: -54.9
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 34..136 e-value: 1.2E-31 score: 109.5
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..179 score: 12.97256
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 35..131 e-value: 2.5E-16 score: 57.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..177 e-value: 1.7E-38 score: 133.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 34..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15356-RA	Carg15356-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding