Carg15306 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15306
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box domain-containing protein
LocationCarg_Chr03: 9199522 .. 9200657 (-)
RNA-Seq ExpressionCarg15306
SyntenyCarg15306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGAATGTGAAGGGTGACGTGCCCACCCGATTCATCCTTTTTCACTTTCTTCATCCCCTTCCCCTTCAACAAAAGAAACCCTAAAAGCTGAAGAAATCGGAGTAAAATCATTCTATATTCCAATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGTATCCGTCCATCATCTCCCTTTTCTCCTTCCAGTTTTAGTTTCAATCTGGTTTGCACCTTCTGCGATCGTCGATTCTAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAAGTACTAGGATTTTGATGAATGTTGGAGTGTCCTCGGCGTAATGTTGGGGCTAATGTGTCGATTGTTTTTCTTTTCGTGATTTCAGCTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAAAGTATATATCCGACATTGTGATTTAATATGTAATCTAGATTTACGCTGTGCTGATGAAGAAGAAGAAATAATCTAATTTACACGATACAGATTAAAATTCTATAGTCTATATAGTTCTTGCCATTCATCAACTTGTTTCTCATACTCCATTTCCATGTTTATGATTTCTTGGCTGTAAAGAGGAGTAAATATTACTCAATTTTGCGAAACTGGTTTTGAAAAATGAATTTAATATGAATTGAATTACATGAATATCTAAATTCTCATGGCTTTTTTGGTGGAGATCTGAACACCTTAGATGTCTCCTCACTTTGTTCCAGAATTATCCAGAGAAATAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAAATAAAACAAAAGGTGGAGTAAAACTAAAACAAAAGATCGGAGTAAAATTAAAACAAAAGATCGGAGTAAAACAAAAAATCGGATCAGAAATAGTCTGAGAATTATCGAGAGAAATAGTCGAGAATTATTGAGGGAAATAGTTATAATTATGGGTAGAAAATTA

mRNA sequence

ATAAGAATGTGAAGGGTGACGTGCCCACCCGATTCATCCTTTTTCACTTTCTTCATCCCCTTCCCCTTCAACAAAAGAAACCCTAAAAGCTGAAGAAATCGGAGTAAAATCATTCTATATTCCAATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAACTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAAAGTATATATCCGACATTGTGATTTAATATGTAATCTAGATTTACGCTGTGCTGATGAAGAAGAAGAAATAATCTAATTTACACGATACAGATTAAAATTCTATAGTCTATATAGTTCTTGCCATTCATCAACTTGTTTCTCATACTCCATTTCCATGTTTATGATTTCTTGGCTGTAAAGAGGAGTAAATATTACTCAATTTTGCGAAACTGGTTTTGAAAAATGAATTTAATATGAATTGAATTACATGAATATCTAAATTCTCATGGCTTTTTTGGTGGAGATCTGAACACCTTAGATGTCTCCTCACTTTGTTCCAGAATTATCCAGAGAAATAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAAATAAAACAAAAGGTGGAGTAAAACTAAAACAAAAGATCGGAGTAAAATTAAAACAAAAGATCGGAGTAAAACAAAAAATCGGATCAGAAATAGTCTGAGAATTATCGAGAGAAATAGTCGAGAATTATTGAGGGAAATAGTTATAATTATGGGTAGAAAATTA

Coding sequence (CDS)

ATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAACTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAA

Protein sequence

MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLFLKTSLYGSFGDSTTKFDDPLNLTSWARLDDRNWRRRAVDHLFGDEQQQIED
Homology
[Close]
BLAST of Carg15306 vs. NCBI nr
Match: KAG7034606.1 (hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 2.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLFLKTSLYGSFGDSTTKFDD 60
          MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLFLKTSLYGSFGDSTTKFDD
Sbjct: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLFLKTSLYGSFGDSTTKFDD 60

Query: 61 PLNLTSWARLDDRNWRRRAVDHLFGDEQQQIED 94
          PLNLTSWARLDDRNWRRRAVDHLFGDEQQQIED
Sbjct: 61 PLNLTSWARLDDRNWRRRAVDHLFGDEQQQIED 93

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: PON37879.1 (hypothetical protein PanWU01x14_317000 [Parasponia andersonii])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: KAG8634527.1 (hypothetical protein MANES_17G048550v8 [Manihot esculenta])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          MA+EL VLGCTGVV+FLHGANFFFHAL QH  VRSL
Sbjct: 1  MAVELFVLGCTGVVMFLHGANFFFHALSQHLAVRSL 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: PON61367.1 (hypothetical protein TorRG33x02_281910 [Trema orientale])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: TYI04626.1 (hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSLR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

[Close]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match: A0A2P5AMV0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match: A0A5D2NLM3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSLR
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSLR 37

[Close]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match: A0A2P5CJZ9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match: A0A5D2AZA5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSL 36

[Close]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match: A0A5J5TXY1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 1  MMMELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSL 36

The following BLAST results are available for this feature:
BLAST of Carg15306 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034606.12.4e-46100.00hypothetical protein SDJN02_04336 [Cucurbita argyrosperma subsp. argyrosperma][more]
PON37879.12.4e-0677.14hypothetical protein PanWU01x14_317000 [Parasponia andersonii][more]
KAG8634527.12.4e-0683.33hypothetical protein MANES_17G048550v8 [Manihot esculenta][more]
PON61367.12.4e-0677.14hypothetical protein TorRG33x02_281910 [Trema orientale][more]
TYI04626.12.4e-0678.38hypothetical protein ES332_A10G032800v1 [Gossypium tomentosum][more]
BLAST of Carg15306 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5AMV01.2e-0677.14Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE... [more]
A0A5D2NLM31.2e-0678.38Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G032800v1 P... [more]
A0A2P5CJZ91.2e-0677.14Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281910 PE=4 SV... [more]
A0A5D2AZA55.8e-0677.78Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G032000v1 PE=... [more]
A0A5J5TXY15.8e-0677.78Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G030200v1 PE... [more]
BLAST of Carg15306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15306-RACarg15306-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane