Carg15207 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15207
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 1679756 .. 1680169 (+)
RNA-Seq ExpressionCarg15207
SyntenyCarg15207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCCCCCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATCATTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTATGAAACAAATACTAACCTGTGCCAATGGATTTCACCACCCTAAACATGTACTGATATTTCCTTATTTATGGTTATGGATATGCCAAAATGCAGGTTCACGAAGACGAGTTCAATAGACCGTCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGATTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAG

mRNA sequence

ATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCCCCCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATCATTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTTCACGAAGACGAGTTCAATAGACCGTCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGATTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAG

Coding sequence (CDS)

ATGGGATCCTCACATTTTCTTTTCTTTTTCCTTCTCTTTAATCTCTTCTATCTTCTTTCAGTGCATCGTTTGCAATCTCCACCCCCCTCCACAGGAAGACCTGCAAGAAAGTACCTTGGTTCATCATTTTCCAATCCCGAATCCGAATTCCTCAAAGTCGAGGTTCACGAAGACGAGTTCAATAGACCGTCTGCAAAAGATATTTCCTCCAACATACCTGAATATGAAGCAAGTATCGACCGTATGGGCGAACTTGTCTACCACATTGATTATCATGGAGTGACAACGCATCCAAATCCGACGCCCAAACATCCATAG

Protein sequence

MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Homology
[Close]
BLAST of Carg15207 vs. NCBI nr
Match: XP_022921360.1 (uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothetical protein SDJN02_14378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 5.0e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. NCBI nr
Match: KAG6589671.1 (hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKV+VHEDEF
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVKVHEDEF 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. NCBI nr
Match: XP_023515382.1 (uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPPP TGRPARKYLGSSFSNPESEFLKVEVH+DEF
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPYTGRPARKYLGSSFSNPESEFLKVEVHKDEF 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. NCBI nr
Match: XP_022987350.1 (uncharacterized protein LOC111484929 [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPP STGRPARKYLGS FSNPESEFLKVEVHEDE 
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDEL 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. NCBI nr
Match: KGN65505.1 (hypothetical protein Csa_019778 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-32
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP   S GR ARKYLG+SFS+        EVHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match: A0A6J1E5F1 (uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC111429652 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match: A0A6J1JGL7 (uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.7e-51
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPSTGRPARKYLGSSFSNPESEFLKVEVHEDEF 60
           MGSSHFLFFFLLFNLFYLLSVHRLQSPP STGRPARKYLGS FSNPESEFLKVEVHEDE 
Sbjct: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPLSTGRPARKYLGSLFSNPESEFLKVEVHEDEL 60

Query: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  NRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 105

[Close]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match: A0A0A0LUD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPP---STGRPARKYLGSSFSNPESEFLKVEVHE 60
           M SSHF+FF LLF  FYL S+  L SPPP   S GR ARKYLG+SFS+        EVHE
Sbjct: 1   MRSSHFIFFCLLFTFFYLRSMDLLHSPPPLFTSEGRQARKYLGTSFSH--------EVHE 60

Query: 61  DEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
           DEFNRPS KD SSN PEYEASI+ +GELVYHIDYHGVTTHPNPTPKHP
Sbjct: 61  DEFNRPSPKDTSSNTPEYEASINSLGELVYHIDYHGVTTHPNPTPKHP 100

[Close]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match: A0A5D3DYI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002010 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.7e-27
Identity = 65/86 (75.58%), Postives = 73/86 (84.88%), Query Frame = 0 

Query: 24  LQSPP---PSTGRPARKYLGSSFSN-PESEFLKVEVHEDEFNRPSAKDISSNIPEYEASI 83
           L SPP    S GRPARKYLG+SFSN P+SE+   EVHEDEFNRPS KD+SSN PE+EASI
Sbjct: 4   LHSPPRLFTSEGRPARKYLGTSFSNYPKSEY--HEVHEDEFNRPSPKDMSSNTPEHEASI 63

Query: 84  DRMGELVYHIDYHGVTTHPNPTPKHP 106
           + +GEL+YHIDYHGVTTHPNPTPKHP
Sbjct: 64  NSLGELIYHIDYHGVTTHPNPTPKHP 87

[Close]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match: A0A438CZ59 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_103994 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 0 

Query: 1   MGSSHFLFFFLLFNLFYLLSVHRLQSPPPST------GRPARKYLGSSFSNPESEFLKVE 60
           M SS  L   LL   FYLL  H   +   S+      GR   + L  SFSN ++E+ +++
Sbjct: 3   MKSSRILLLCLLTTAFYLLHQHSSIASTSSSSLNFLPGRRHVRELSMSFSNRKNEYQEIQ 62

Query: 61  VHEDEFNRPSAKDISSNIPEYEASIDRMGELVYHIDYHGVTTHPNPTPKHP 106
             +DE  +PS     S   E+ +S + + E+VYHIDYHGV THP PTPKHP
Sbjct: 63  DVDDEM-KPSTMQEDSIAVEHRSSSENLEEIVYHIDYHGVMTHPTPTPKHP 112

The following BLAST results are available for this feature:
BLAST of Carg15207 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921360.15.0e-53100.00uncharacterized protein LOC111429652 [Cucurbita moschata] >KAG7023353.1 hypothet... [more]
KAG6589671.11.5e-5299.05hypothetical protein SDJN03_15094, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023515382.17.3e-5298.10uncharacterized protein LOC111779554 [Cucurbita pepo subsp. pepo][more]
XP_022987350.11.8e-5097.14uncharacterized protein LOC111484929 [Cucurbita maxima][more]
KGN65505.16.4e-3271.30hypothetical protein Csa_019778 [Cucumis sativus][more]
BLAST of Carg15207 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15207 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E5F12.4e-53100.00uncharacterized protein LOC111429652 OS=Cucurbita moschata OX=3662 GN=LOC1114296... [more]
A0A6J1JGL78.7e-5197.14uncharacterized protein LOC111484929 OS=Cucurbita maxima OX=3661 GN=LOC111484929... [more]
A0A0A0LUD63.1e-3271.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G427550 PE=4 SV=1[more]
A0A5D3DYI58.7e-2775.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438CZ592.0e-1041.44Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_103994 PE=4 SV=1[more]
BLAST of Carg15207 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15207-RACarg15207-RAmRNA