Carg15192 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg15192
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 1622805 .. 1626109 (+)
RNA-Seq ExpressionCarg15192
SyntenyCarg15192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCCACATGTCGATGTGCTACTGTACCTCCGGCGCCTCCCGATGGCCTCAGTCTTGTTGATGTAGGTAGGTTATACTGAATTTGATTCACAAAATTGCTTCACTTTAAATGACTGATTTTTTCCTTTTCCCGATCAAAGTTGCATGGGCTACTACCAACCCTTTTTGATTGGCGGTGTTATTATTACCAAATTTCTACAACCTTAGATTTAATGATTGAATTGTGTTAAGAGAAATGTCTACTTGGGTTGTGAAAGTTGGTATGCATTTTATCACACATCACTCCAGGTGTTTGTATTTGTCTCAGGTTGGAGGCTAGTTTTTGGTTAGATCAACTGTTTCAGAGGGATGGGCCAGAGATTCAAGCCTCTAGCGTTTCAGGGAAGTTACTCATACTTATCCATTTGAGCTATATTCAAATCTTGTTTCCATCTATTTGATTGAGGAAGTAAACTATCTGACTAATTTACTTCATATCCAATTCCCAACTGGAGAGCACAAATGAATTGTTTAGCGAAGCTGTTTTAATGGTACAACTCTATGCCTTCTCTGCTATAATCTAATGCATGTGTGCTTACTTTACTGCTGTCTAGGATTATACTTTTCTTTTTGAAGTAGTACTCATGAGTTTAGAGATTTCCACCCAGGAGAGAATTACCATTCATGAATCGAACTTCCTAAGCATTGTTGAGCCAAAGGAAACACAATAATTTCCCATTCTACGTTCAAAACCTATTCTATTCATCGAAAAGCCCCTGCTCCACTGTATCTTCATCTTCAACCTCACATCCTTCTGCTAGAATTAGCAGGTGAGTTGTATCGTCTTCTCATGAGGTATCTGCTGTTGCTTTATAAGCCTTTTTAACTCAAGCCCCAACTCACATGGTAAAATTGAGTTCATCAGATAACCCTCTTGAAGATCTAACATCAGATTCACTGGCGTATGAAGAATAAAAATCTTCATCCCCATCTTTTTCTTTCAACTCCTCAATCTTCTCCACAACCTCTCTCAAATCCAGCCTCTTTTCAAAGTCGCTCTCGCAACATGCTAATGCAATCCTCAGAAGCTTCATCATCTCACCCTCGCTGCTCTTGGTTGGCCCCATGTTCTTATCAAATACTTGGCTATTCCATTCTGTCGCAGGAATGGATTTGACCCAACTTGCCAAATCTTCCTCGTCCCCACCCTTGCCCTGATGCAGAAAGTTGGCTACGAGTTTCCCTGTTAGAATCTCTAGGATCAACAGCCCAAAGCTCCACACATCTGTTTTCTTTGTGATGCGACCTTGTTGGTTGTACTCCGGGGATCTGTAGGCCACCATTAGATCTTGGGCGTGCTCTTGGTTGATAACTGGGATCAGGCCATAGTCCGAAAGAAGGGGCTCATAGTTGGCATTGAGAAGCACATTTGAGGACTTGAGATGGCCGTGTGGGGTTATGAGACTTGGAAGCTCACTGTAGAGATAGCGAAGACCCTTTGCAATGCCCTTGATGATCTTCAACCTTGCAGACCAATCAAGGGCTGGTTGACCCTCGGCTTTTTGCCCTGAAAGACACAGACAAGAGAATCCAATTGAGCCAAAATTTGAAGTATTTTCTGTTGACTACCAAACTCTTGAGTTAAACTAACAGGTTAAGGTATATTTAACGCTCCCCTCACTCGCGAACTTCATACTAGTTCAAACACTAAACCTTCTTCTACTCTAACATCATGTTAAGTTGATGATTTATGGTATTTCTAATCTTTTGTGCACATTCTTAACATGTTCCTTCACTTGTGTTCTATTGGAACTTAACTAGAAGACCTTTTGTTTTGATGTTATGAGAAAGTACCAATAAACTCGAAAGTATAAGTTGATACATTTAATCTTTTTATAAATATTTTTAACCAATTTTAGTGAGGTATAAGAAGAAGAAAAGGGGAATGTACCATGAAGTTGAATAACCAAGCTACCCTTCTCAACAAAGTTTGTTATGAGAAGCTTTTCTTCCTTTTTGTAGAAGTAGGCTACGAGAGGAAGCAAGTTGGGGTGTTTCAATCTTCCAATTCTCTTCATATGTTCTTGGAATTCATCTTTATCCACATTGTTCATTTGCTTAAACCTCTTTACAACCACCACAGGTCCGCCGGTCATGGCTGCCTTGTAAGAAGAACCGAAGCACCCACTTCCTAGGATCTGTGCAGAGGCTTTAAGCAAGTCTGATAAATCAAATTTCTCCAAGTCCTCTCTTACAAATGATAACTTAGCACCCTCAGCCACCCGTCTCCCCGATCCATGACTGGAGGCACGGTCCGGTGACTTTGCCCCGACTCCTGGATCTAACGCTCTAGCACCTGGAGATTTGCCGTTGGCTGGAACCTCTTCACAAGAAGATGATTGGTTCCGACGGCTAAGGATTACTATTCCTGCACCGATGGCAAGCAAAGCTTGTGTCAGAGCTATTGAAACCATGATGATGCTCGCGATTGATGGCATATCTGCGGTATTGCATGGTTTATTAAGTGGCGGTCCACATAAGCCTTCAATGCCTGCATATAGGAGAACTAGGTTCTTAGAAAAATAATACATTAAGGAAATGGACAGATGTGTTCATATTGGAAAGTGCATGAAGTTGTTTGATTATATCTGCGATTTAGAAGTGGTGGTATAAATGATTTCTGAAAAGTGGAGAGATGATGAACACCTGAAAAGGAGGATGGATCCATGCGGGAGAGGGCTTGTGGGATTGGGCCATGAAGTTGATCGTTATGGGAGATATTAAAGGACTTGAATGCCTTCTGCTGGAAATTAGGAATTCGGGCAGAAAACTTGTTTCCTTCCAGCCTCAACTCCAATAAGCGAGGCAACTCGACCAAGGACCAAGGAATCGGACCCTCAAACTGGTTGTGTGCCAAATGAACCTTCTTCAAAGACATCATGTTGGAAAACGAATCCCCAGGAATGCTGCCTGAGAATTGGTTTCCAGACAAAAACAGAGATTTCAATGCCCCAACTCTCTTGACATCCGGCAAAGAGCCCTCAAAATTATTGTTCTTAAGGCTAATAATCCTTAAAAAGGGGATCCCTTCCAGGGACTCCATGTCAATGCTGCCCTTCAGCCCCATGTGCTCGAGCTTCAATCCCCAAACATGGCCCTTGTGGCAAATAATACCCACCCAATTCGCCTTGTTCTCGGAGCAAGGGGAGGACTCCGGGCCCCAATCACGCAACGCATCATTGCTTATTTCAAGAGAGCTTTTGAACTTGAGGAGCGCTTCTGCATCCGTGTGAGCGCCCCAACACACAATCAGCTCCAATGA

mRNA sequence

ATGGGTGCCACATGTCGATGTGCTACTGTACCTCCGGCGCCTCCCGATGGCCTCAGTCTTGTTGATGTAGCACCTGGAGATTTGCCGTTGGCTGGAACCTCTTCACAAGAAGATGATTGGTTCCGACGGCTAAGGATTACTATTCCTGCACCGATGGCAAGCAAAGCTTGTGTCAGAGCTATTGAAACCATGATGATGCTCGCGATTGATGGCATATCTGCGGGACTCCATGTCAATGCTGCCCTTCAGCCCCATGTGCTCGAGCTTCAATCCCCAAACATGGCCCTTGTGGCAAATAATACCCACCCAATTCGCCTTGTTCTCGGAGCAAGGGGAGGACTCCGGGCCCCAATCACGCAACGCATCATTGCTTATTTCAAGAGAGCTTTTGAACTTGAGGAGCGCTTCTGCATCCGTGTGAGCGCCCCAACACACAATCAGCTCCAATGA

Coding sequence (CDS)

ATGGGTGCCACATGTCGATGTGCTACTGTACCTCCGGCGCCTCCCGATGGCCTCAGTCTTGTTGATGTAGCACCTGGAGATTTGCCGTTGGCTGGAACCTCTTCACAAGAAGATGATTGGTTCCGACGGCTAAGGATTACTATTCCTGCACCGATGGCAAGCAAAGCTTGTGTCAGAGCTATTGAAACCATGATGATGCTCGCGATTGATGGCATATCTGCGGGACTCCATGTCAATGCTGCCCTTCAGCCCCATGTGCTCGAGCTTCAATCCCCAAACATGGCCCTTGTGGCAAATAATACCCACCCAATTCGCCTTGTTCTCGGAGCAAGGGGAGGACTCCGGGCCCCAATCACGCAACGCATCATTGCTTATTTCAAGAGAGCTTTTGAACTTGAGGAGCGCTTCTGCATCCGTGTGAGCGCCCCAACACACAATCAGCTCCAATGA

Protein sequence

MGATCRCATVPPAPPDGLSLVDVAPGDLPLAGTSSQEDDWFRRLRITIPAPMASKACVRAIETMMMLAIDGISAGLHVNAALQPHVLELQSPNMALVANNTHPIRLVLGARGGLRAPITQRIIAYFKRAFELEERFCIRVSAPTHNQLQ
Homology
[Close]
BLAST of Carg15192 vs. NCBI nr
Match: KAG7023338.1 (hypothetical protein SDJN02_14363, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MGATCRCATVPPAPPDGLSLVDVAPGDLPLAGTSSQEDDWFRRLRITIPAPMASKACVRA 60
           MGATCRCATVPPAPPDGLSLVDVAPGDLPLAGTSSQEDDWFRRLRITIPAPMASKACVRA
Sbjct: 1   MGATCRCATVPPAPPDGLSLVDVAPGDLPLAGTSSQEDDWFRRLRITIPAPMASKACVRA 60

Query: 61  IETMMMLAIDGISAGLHVNAALQPHVLELQSPNMALVANNTHPIRLVLGARGGLRAPITQ 120
           IETMMMLAIDGISAGLHVNAALQPHVLELQSPNMALVANNTHPIRLVLGARGGLRAPITQ
Sbjct: 61  IETMMMLAIDGISAGLHVNAALQPHVLELQSPNMALVANNTHPIRLVLGARGGLRAPITQ 120

Query: 121 RIIAYFKRAFELEERFCIRVSAPTHNQLQ 150
           RIIAYFKRAFELEERFCIRVSAPTHNQLQ
Sbjct: 121 RIIAYFKRAFELEERFCIRVSAPTHNQLQ 149

The following BLAST results are available for this feature:
BLAST of Carg15192 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023338.12.4e-77100.00hypothetical protein SDJN02_14363, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg15192 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15192 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg15192 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15192-RACarg15192-RAmRNA