Carg15182 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg15182
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L19
Location	Carg_Chr10: 1544885 .. 1545773 (+)
RNA-Seq Expression	Carg15182
Synteny	Carg15182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGTAAGTACAACAACTTTCCAAGAATTATCATCTGGTTTTTTTCTTCCTGTTAAACTTTATCAGTCATGAAGTTGGCTTATGAGTGCACAACCATGTTTAAGAGGAGAGGAGAGAAGAAAAGAAAAGGTTTGGCGAACATAACATATACAGATTTAACAAAAGAGTGAACAATGAATTCTTTTGTTTCAGGAAAGAATTTTGTACCTGATTATTAACAATTTATCAAAGATGCAAAAGAAAAACATTTTAACTAGAAAACACATGTAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

mRNA sequence

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

Coding sequence (CDS)

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSKFRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYTAITGSGSDKIHTFRECLPYGVEVS

Homology

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BLAST of Carg15182 vs. NCBI nr
Match: KAG7023328.1 (60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.7 bits (1005), Expect = 3.8e-105
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECLPYGVEVS
Sbjct: 181 AITGSGSDKIHTFRECLPYGVEVS 204

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BLAST of Carg15182 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 202/204 (99.02%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKR+VWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECLPYGVEVS
Sbjct: 181 AITGSGSDKIHTFRECLPYGVEVS 204

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BLAST of Carg15182 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 5.7e-101
Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDG IIKR TTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSE ASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECL YGVE S
Sbjct: 181 AITGSGSDKIHTFRECLSYGVEAS 204

[Close]

BLAST of Carg15182 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 4.8e-100
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETC ISLANSRMSIRKLIKDG IIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQS EAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           A TGSGSDKIHTFRECL YGVE S
Sbjct: 181 ATTGSGSDKIHTFRECLSYGVEAS 204

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BLAST of Carg15182 vs. NCBI nr
Match: XP_038879968.1 (60S ribosomal protein L19-1-like [Benincasa hispida])

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-72
Identity = 152/171 (88.89%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSR+  +AKSRG+HSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  SRSRRRSDAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+EKASE+TLS Q+EAKRA NSKATV
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATV 171

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BLAST of Carg15182 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-61
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Carg15182 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Carg15182 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-59
Identity = 119/192 (61.98%), Postives = 152/192 (79.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of Carg15182 vs. ExPASy Swiss-Prot
Match: P0DJ60 (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-51
Identity = 106/167 (63.47%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE+  IS+ANSR SIRKLIKDG ++KR+T IHS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R   EAK +G+H+G GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNS 168
           H+ Y   KGN+YKNK VL+E IH  K++K     L++Q EA+RA+N+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNT 167

[Close]

BLAST of Carg15182 vs. ExPASy Swiss-Prot
Match: Q90YU8 (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.6e-51
Identity = 101/169 (59.76%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDG IIK+  T+HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R++  A+ +G+H G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKA 170
           H +Y R KGNV+KNKR+LME+IHK+K+++A ++ LS Q EA+R++  +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of Carg15182 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 202/204 (99.02%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKR+VWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECLPYGVEVS
Sbjct: 181 AITGSGSDKIHTFRECLPYGVEVS 204

[Close]

BLAST of Carg15182 vs. ExPASy TrEMBL
Match: A0A6J1JJK9 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETC ISLANSRMSIRKLIKDG IIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQS EAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           A TGSGSDKIHTFRECL YGVE S
Sbjct: 181 ATTGSGSDKIHTFRECLSYGVEAS 204

[Close]

BLAST of Carg15182 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.9e-72
Identity = 150/171 (87.72%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ H+AKSRG+HSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of Carg15182 vs. ExPASy TrEMBL
Match: A0A6J1C1I4 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.0e-71
Identity = 147/172 (85.47%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE  T+SLANSRMSIRKLIKDG IIKR T I SK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEAK+RG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 173
           HQMY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 172

[Close]

BLAST of Carg15182 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.6e-71
Identity = 148/171 (86.55%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET T SLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ H+AKSRG+HSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+E+A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of Carg15182 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-62
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Carg15182 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Carg15182 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-60
Identity = 119/192 (61.98%), Postives = 152/192 (79.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of Carg15182 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 56  TIHSKFRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKI 115
           +IH   RSR    A+ + +H+GYGK   T EA         RR+++L+RLL+K+   +KI
Sbjct: 3   SIHFHSRSR----ARRKCRHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNKKI 62

Query: 116 DKHI-YHQMYTRVKGNVYKNKRVLMENIHKVKSEK---ASERTLSAQVEAKRARNS 168
           DK + YH M+ +VKG VYKNK VLME++HK   E+    SE  L+ + E ++  ++
Sbjct: 63  DKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

The following BLAST results are available for this feature:

BLAST of Carg15182 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023328.1	3.8e-105	100.00	60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022921592.1	3.2e-104	99.02	60S ribosomal protein L19-3-like [Cucurbita moschata]	[more]
XP_023515875.1	5.7e-101	97.06	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988450.1	4.8e-100	95.59	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]
XP_038879968.1	2.5e-72	88.89	60S ribosomal protein L19-1-like [Benincasa hispida]	[more]

BLAST of Carg15182 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49693	1.6e-61	65.96	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9SRX2	2.7e-61	65.96	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
Q9LUQ6	1.9e-59	61.98	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
P0DJ60	2.5e-51	63.47	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN...	[more]
Q90YU8	5.6e-51	59.76	60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1	[more]

BLAST of Carg15182 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0X8	1.5e-104	99.02	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1	[more]
A0A6J1JJK9	2.3e-100	95.59	Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1	[more]
A0A1S3BVU0	5.9e-72	87.72	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
A0A6J1C1I4	1.0e-71	85.47	Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1	[more]
A0A5A7UX03	6.6e-71	86.55	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of Carg15182 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02230.1	1.1e-62	65.96	Ribosomal protein L19e family protein	[more]
AT1G02780.1	1.9e-62	65.96	Ribosomal protein L19e family protein	[more]
AT3G16780.1	1.4e-60	61.98	Ribosomal protein L19e family protein	[more]
AT4G16030.1	2.4e-09	40.52	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 2.7E-80 score: 282.7
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 e-value: 2.7E-57 score: 192.9
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 2..55 e-value: 6.9E-25 score: 88.6
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..184 e-value: 1.2E-47 score: 162.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..84
None	No IPR available	PANTHER	PTHR10722:SF5	60S RIBOSOMAL PROTEIN L19-2	coord: 1..189
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..189
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..166 e-value: 8.0459E-73 score: 215.677
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15182-RA	Carg15182-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome