Carg14879 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14879
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 13741026 .. 13743239 (+)
RNA-Seq ExpressionCarg14879
SyntenyCarg14879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTTGCCAGTACAGAGTCACATCATTTTTTCCATTGAGAAGGTTTTTCTTTCCGCCTCATTTATTTTCTCTGGGTTTGTTTAGCCTTATTTGATTTGAGGAGATCAATAAATCTTCTTTTTGCTGATCTTTCTTTTATTGTATCTGATTCATACCTAACTTTCACAGTCATTCATCACCATTTTCCTTTTTTTATAGAATTAAAGTAGACTTCAATGAACAAAGACCATTTTGATAGAAACTTTTCTTATCTTCCTTTCATTTTGATACATGATACATGATCTTTGTTGGTATTTTAGCTCACCAATTTATTAAGTCTTAGGTTTTTCTAAGCCTACAGTTTGAGAAGTTATCTCTGAGTTTTTGTAGCTTAATTATACTTATAAATGTAGAGAAATGAGTGAATAAAACTTTGGTTTGGGAAGGATGGAAGAGCAAAGAGCACATTTGCCAAAGTGCTTTGGGACAAATTATTGTTGCTTGTCCTCCTTCACTGTTCATTTGAGGTGTGGTAGTGGGTTAAAAGGGGAAAATGCCTCCGATGTTGATTGATCTATAGAATACTGATAGGAGTGAGCATATTCATGCATGAGATGCTTCATATTTCATTAAATGTGTTAACCAAATTTGACATCTACTTGGGATCTTGAACTTTCATGTTTTTGATAATTTGGTCTTTAGATTTTTACTCTATTCTAGTTTTCTAATATGGGATGAGAAAGTAATTTTAGTCTATATTTCTATTGACCCCTATTTTGTTTCTCTGTGTTGTATGTTAGAAGTCATGTTTTGTGAGTTTATAGTGGTTAAGGGTGGAGAATGAAAAAATTCTTATAAGAGTATGTAAACCTCTCGCGAATAGACGTAGTTTAAAATCGTAGGTTGACGTCGATACGTAGAAGGCCAAAGCTAACAACATTTGCAATGGGTTTGAGTTATATATTTAGCCCGTTTAGGTTCTTGCTGATTAGTCGTAAAAAATGTTAGGGTTGGGATTAAAATAAAATACGTACGTAAGATTTAATAATTTATCTAAATGCTTCTTTTAAGAACTAGATGATGTAATCTTTAATAGTGGGAGTTGATGAAACCGATGGAATCACTAAAGGAGACCTAAAAGACATTAATATTGACCCAAATTAACCACTAAAGTGATGTAAGATTGTGTTTTTCTTTGTTTGTTTGTTGAGAAAAATCAGAATACTTGGTGGCCAAGCATGATTATTCCTCGTGATTCTATTGTCTCTGTAATATGAATAGTGGCAGCTTACACCCATGATTTTGTGAAGATTTTTTTAAAAATTATGAACTAACACGGGTGTGTTCATGTGTTTTTTTAGTTTATCGTGTAGAGTTAGAAGATTTGAACATCAGACCGCTCGATCGAAGGTACGTTTAAACTACTTAAGCTAGATTTAAATTGATAAATAATAATTTACGATAGATATGTTGTGATACTCAAAAATGTTATTGATTAAACTTCATATTTTGATAAATTATCACTGTTCTTGATCCATGATTAATATCAAAAAGTGATTTTTGTTGGGTCCTTAAACTTACCCTTCAAAGTCTTTGTAATTGTGAGGGGTTTTGTAATAGTGCTTTAATCCACGTTTAAGAATTGGACAAGGACTCATCTCTGTCACCAAATTTGACTCGGAAGTATCCATTATTGGTATTGAAATTTCTTTGCAACCTCATCCAAACCTCCCTCCCAAAAGTTAAATTGCCTTGGAATTCTCAGTTTGTTGCATGTCTGTGGGGGCGGTTTACCTCTTTATTCTCATCTCCTATCTCATTTTCCAAGATCGAAAAGATCAAATTTCGTGTGAAATATATATAAAATTCATTATCTTCAGGTAGTGTATATCAATTTAATAATTGAGGTAAATTAAGGTGGACCAGGATCGAAATTAGAGTGTATCTGTCTAATTGAGACAAATTAAGGTAGAGCAGGATTGGCGTTGGAGTGTATAATCTACTGTCTTCCGCACTATTTAATTGACGGAAACAAATCTCTATCTTCTACTTCTTCTATTCTTTATTTAAATAGAAATGCATATCATAAATTCCTCATTTCCCCAAATTTGGTAATAATTAATTTTACATTTATTTCTGTATGATTTAGACCAAACAAAAAGCATCTGTCTGCTTCTGTCCAATAGAAACAAGTTCTTTTTGGGAATGTTGTCCTCGCAGTCCTGCGTAG

mRNA sequence

ATGGAAATTTGCCAGTACAGAGTCACATCATTTTTTCCATTGAGAAGAGTTAGAAGATTTGAACATCAGACCGCTCGATCGAAGGTAGTGTATATCAATTTAATAATTGAGACCAAACAAAAAGCATCTGTCTGCTTCTGTCCAATAGAAACAAGTTCTTTTTGGGAATGTTGTCCTCGCAGTCCTGCGTAG

Coding sequence (CDS)

ATGGAAATTTGCCAGTACAGAGTCACATCATTTTTTCCATTGAGAAGAGTTAGAAGATTTGAACATCAGACCGCTCGATCGAAGGTAGTGTATATCAATTTAATAATTGAGACCAAACAAAAAGCATCTGTCTGCTTCTGTCCAATAGAAACAAGTTCTTTTTGGGAATGTTGTCCTCGCAGTCCTGCGTAG

Protein sequence

MEICQYRVTSFFPLRRVRRFEHQTARSKVVYINLIIETKQKASVCFCPIETSSFWECCPRSPA
Homology
[Close]
BLAST of Carg14879 vs. NCBI nr
Match: KAG7018907.1 (hypothetical protein SDJN02_20781, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MEICQYRVTSFFPLRRVRRFEHQTARSKVVYINLIIETKQKASVCFCPIETSSFWECCPR 60
          MEICQYRVTSFFPLRRVRRFEHQTARSKVVYINLIIETKQKASVCFCPIETSSFWECCPR
Sbjct: 1  MEICQYRVTSFFPLRRVRRFEHQTARSKVVYINLIIETKQKASVCFCPIETSSFWECCPR 60

Query: 61 SPA 64
          SPA
Sbjct: 61 SPA 63

The following BLAST results are available for this feature:
BLAST of Carg14879 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018907.12.6e-28100.00hypothetical protein SDJN02_20781, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14879 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14879 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14879 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14879-RACarg14879-RAmRNA