Carg14810 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14810
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 14114740 .. 14118372 (-)
RNA-Seq ExpressionCarg14810
SyntenyCarg14810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGTACCCGGAACCGAAGAGATTGTAATGGTTCAGATAATGATACAACAGATAAAGATCTCTCCTCTTCTCAAAACCAGGTTGCTTGGGCATAACCTGGACAAAATGACCAAACATTTCAAATGTAAAAACTAGTTAGCATGAGCTGAAAAGGCAAAGGAAAAGTAGTAACGGCAGTTCTAACTTGTAAGAAGATCATCGTAACGCGAAAAGGGGAAATGTAACAATCTAAGCTTACCACTAGTAGATATTGTCTTCTTTGGATTTTCCCTTAAGGTTCTAAAATGCGTCCATTAGAGAGGGATTTCCACACCCTTATAAGGAATGCTTCATTCTCCTCTCCAACCAACGTGGGATCTCACAATTCACCCCCCCTAAGGGATCCAACATTCTCGCTGGCACACCGCCCGGTGTTTAGCTCTGATATCATTTGTAACAACCCAAGCTCACCGTTAGTAGATATTGTCCTCTTTTGGCTTTCTCTCAAGGTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCTTCATGAGAAATTCTCTCGTTCTCCTCTCCTATCAATGTGGGATCTCATAGGAAAGTAGACAATCGACAGGCAATCGACAAATAAAGAGGAATGAGAAATTTATTAACTTGGAAAACAATAGTACCTGAAAATAAGCATCATAAAAGGAACCTCCAAAGCCAGCACACCATGACATTCCAAATTCTGCTTCATTGTGTCCATCTGAAAAATGTAGTCTTAGAGACCAAACACTTGGTAAGATAAACGACTTCTTTTAAAGATAAGTTGTTGAAGCTCTAGACCTCTCCTGGACTAGTTCTTTGGAACAAAAATGTAACGATAAAACTAGAAAGAAATGCTAAAAACCCAATTGAATAAGAGGTAGGAGCATTTCGACTTTGATTCATCTACGCCAAAGATCTACTATGTCATTCTCTACTTCTACTTCCGAGGGATTCATTTCGATATCACTGATCTTTTCGTATCCAAGCATTATTTTGGTAATTGCAAATGCATGAAGTATGAGGAAAGTTGAACTTACAATAACATGCTGGGTCAAGTATAACAGGCTCTCCATTCTTATCAGAGCTGATATTTCCACTCCATAAGTCCCCGTGTAGCAAACACGGTTCGATCATGACATTATCAAACAGAGGTCCAATACTTTTTGCCAGCCTTTGTCCTGTTAAATGCAAAATCAACATAAAGCTCAATCAGAAAGATAGCCAAGGGCAGCTGTCTATACAAAGAATAAAGCCATAATTCATCATCTTCAAGTGATGATAACAAGTTACTAAATCTTGTAATACCCATCTGCAGTACCAAATCTTCAAAAGCAATCAAGGGTTATATTTACCCCTTTTGGAACATATGGCAAGATCATAAAAGCCTTTTTATCACACAAAACTATGATCGAAAACGCGGTCAACATACTGCTAAAAGAAAATCTCATTTTCGTTTCGGACATTATTTGGAGAAGTTATATTGTTGAATGTCAACCAGACAAACATTAGTGCCATTCTCCAAAACGCAATGTTTACCTTTCTCATAAATGGTTCTATCGCCATACTGGTCAAGTGCTAGCCTCAGCTGAAATCCCAATCTTTCCTCCGCATAAAACTGTACCCAATCCGATGACCAAGTGTTTATTTGTGGAGTACTAGGAACATAAGACATACAAAGAGAATAAGAACTCACTTATAAAACGCTGCTTCAATTGCTGATAATGGTACTTATCTATGACCTGTGCATATACTTACAGCACTAGCAGATAGGATTCACAAGAACTCACCTGCCAATGGTGTTGTTGACATCAAACCCAAATCCCTTGTCAGATTTTCCAGCTTTGTGCATTTCAGCAAGCTTTCTTCCCAGCTCAAACTGAGGTCAGTAAAGGGTAGATTTAAGTTCTGTTGCCATATTCATAGTTTCGATTCCAATGAAAAAGAGGATGATCCATTTCTTACCTGGTTGCCTCTGGAGGAGCCAAATTCTATGAATTCCATAATGATGTATGAGCCACCAGAAGGTAATGATCCGAACTGTAATGAGTAAAATAAGTTCAGTTCTTATTTGTAGTCGATCAATGGATGAATGAACTACAACTTTAATGAAGGAACAATGACTGGATAATAGAGTATAACTCTTCCCGGAACTGAAATTCTTCAAACCTTGAATGGTTTAGGAACACGGATAGTTTGCGTTTCGTACATTGCACTTAAACCAAGAGCTTCTGCTTCAAACATTGAGGGTCCAATGCTCCTGAGTGAGTTACATAACTGCTCATAATTTCTCTCACTTCTTTTTATCATCTGTCAACTATAAGAACACAAGAGTTCTTACCTATTTCTTTTTACAAAAAAGGACCCAGCATCCGTGTCGTAGCGATTTGCCTGGTTGATGCAACCACCACCAACTGGGCTAATTTTTGTTATCTGTGTTGCTTTTCCTTCAGAGAGAATCCATTCTTTTATAGGATCATCTCCCATTGCTGCAACTGAAACCATTCAGAATGAGAAGTTCAATCAACTCATGTCACCTAGAGAGTTCATTAATATCAAACTTCTGCAGCGCAAGCATGCAGTTCAGAGAGAGAGAATAATGTAATAGCTCAAGCTCAGCGCTAGTAAATATTGTCTTCTTTGGACTTTCCCTCAAGGTTTTAAAACTCGTCCACTAGTGAGAGATTTTCACACCCTTACGAAAAATGCTTCGTTCTGCCTTACAACCAACGTGAGATCTCACAATCTACCCCTTTGGGGGCCAACGTCCTCGCTGGCACACTGCCTGGTATCTGGCTTTGATACCATTTATAACTAACCCAAACCCACCGCTAGTAGATATTGTCCGTTTTGACCCGTTACATATCGCCGTCAGTTTCACGATTTTAAAACGCATCTTAAAAACCTTGAAGGAAGACCTGAAAGGGAAAGCCCAAAGAGAAAACCTTAAGGGGAAGGCTGAAAGGGAAAACCCAAAAAGGACAGTATCAGCAAGTGATGGGTCGTGTGGTTGTATATGACCTCTAAATTCCACCGACATCAGTAATTGGAATGGACAGAAGTATGTAAAGAAACTTTCACAGGCAGAAGGCAAGTACCACTAAAAGCAGTAATGGCATATAGATGGAATCAGGTACTGAAATTTACAATAATCCAAAGAAACCCAAATATAAACTGGGAATCTCTGATATCGCCAAAACACCAAAACCAAAAAATCCCAAAACAATATAAGAAAAGCATCATTAACATAACTCAATCATCAAAGGAAATGAAACAGAACAGAATGGCAATGCACAAGGCTACAATCCCATCCCAAAGTGCTCATCTTACAAAGAACACAAACCCCTCAAACTCAAATTTAGAATGGAAAAACACGAAATTGAAACAAAACTGGAAATTGAAGGAAACAATGAAGTGGATCTGCAGCTAACCAGTGTAGGTTATGTTCAGAATTGAACTCACCGGCAAATGGTCGGCGTTTGGCGGAGGAGAGAGGAGGACGACGAAACAGAGAAGGGGAAGAGGAGGGGAAGTAACTGAGACCCATGTGTGCCACCATTATCTTTTTGGAGGACGGCACAAGGCCAATGGCCAACAAGGCCGATTGCCGCTTGGTTTGTAG

mRNA sequence

ATGAACGGTACCCGGAACCGAAGAGATTGTAATGGTTCAGATAATGATACAACAGATAAAGATCTCTCCTCTTCTCAAAACCAGGAGCATTTCGACTTTGATTCATCTACGCCAAAGATCTACTATGTCATTCTCTACTTCTACTTCCGAGGGATTCATTTCGATATCACTGATCTTTTCGTATCCAAGCATTATTTTGCACTAGCAGATAGGATTCACAAGAACTCACCTGCCAATGGTGTTGTTGACATCAAACCCAAATCCCTTGTCAGATTTTCCAGCTTTGTGCATTTCAGCAAGCTTTCTTCCCAGCTCAAACTGAGTTTCGATTCCAATGAAAAAGAGGATGATCCATTTCTTACCTGGTTGCCTCTGGAGGAGCCAAATTCTATGAATTCCATAATGATGTATGAGCCACCAGAAGAGAGAATCCATTCTTTTATAGGATCATCTCCCATTGCTGCAACTGAAACCATTCAGAATGAGAAAATTGAACTCACCGGCAAATGGTCGGCGTTTGGCGGAGGAGAGAGGAGGACGACGAAACAGAGAAGGGGAAGAGGAGGGGAAGTAACTGAGACCCATGTGTGCCACCATTATCTTTTTGGAGGACGGCACAAGGCCAATGGCCAACAAGGCCGATTGCCGCTTGGTTTGTAG

Coding sequence (CDS)

ATGAACGGTACCCGGAACCGAAGAGATTGTAATGGTTCAGATAATGATACAACAGATAAAGATCTCTCCTCTTCTCAAAACCAGGAGCATTTCGACTTTGATTCATCTACGCCAAAGATCTACTATGTCATTCTCTACTTCTACTTCCGAGGGATTCATTTCGATATCACTGATCTTTTCGTATCCAAGCATTATTTTGCACTAGCAGATAGGATTCACAAGAACTCACCTGCCAATGGTGTTGTTGACATCAAACCCAAATCCCTTGTCAGATTTTCCAGCTTTGTGCATTTCAGCAAGCTTTCTTCCCAGCTCAAACTGAGTTTCGATTCCAATGAAAAAGAGGATGATCCATTTCTTACCTGGTTGCCTCTGGAGGAGCCAAATTCTATGAATTCCATAATGATGTATGAGCCACCAGAAGAGAGAATCCATTCTTTTATAGGATCATCTCCCATTGCTGCAACTGAAACCATTCAGAATGAGAAAATTGAACTCACCGGCAAATGGTCGGCGTTTGGCGGAGGAGAGAGGAGGACGACGAAACAGAGAAGGGGAAGAGGAGGGGAAGTAACTGAGACCCATGTGTGCCACCATTATCTTTTTGGAGGACGGCACAAGGCCAATGGCCAACAAGGCCGATTGCCGCTTGGTTTGTAG

Protein sequence

MNGTRNRRDCNGSDNDTTDKDLSSSQNQEHFDFDSSTPKIYYVILYFYFRGIHFDITDLFVSKHYFALADRIHKNSPANGVVDIKPKSLVRFSSFVHFSKLSSQLKLSFDSNEKEDDPFLTWLPLEEPNSMNSIMMYEPPEERIHSFIGSSPIAATETIQNEKIELTGKWSAFGGGERRTTKQRRGRGGEVTETHVCHHYLFGGRHKANGQQGRLPLGL
Homology
[Close]
BLAST of Carg14810 vs. NCBI nr
Match: KAG7018967.1 (hypothetical protein SDJN02_20844, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 444.1 bits (1141), Expect = 6.9e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MNGTRNRRDCNGSDNDTTDKDLSSSQNQEHFDFDSSTPKIYYVILYFYFRGIHFDITDLF 60
           MNGTRNRRDCNGSDNDTTDKDLSSSQNQEHFDFDSSTPKIYYVILYFYFRGIHFDITDLF
Sbjct: 1   MNGTRNRRDCNGSDNDTTDKDLSSSQNQEHFDFDSSTPKIYYVILYFYFRGIHFDITDLF 60

Query: 61  VSKHYFALADRIHKNSPANGVVDIKPKSLVRFSSFVHFSKLSSQLKLSFDSNEKEDDPFL 120
           VSKHYFALADRIHKNSPANGVVDIKPKSLVRFSSFVHFSKLSSQLKLSFDSNEKEDDPFL
Sbjct: 61  VSKHYFALADRIHKNSPANGVVDIKPKSLVRFSSFVHFSKLSSQLKLSFDSNEKEDDPFL 120

Query: 121 TWLPLEEPNSMNSIMMYEPPEERIHSFIGSSPIAATETIQNEKIELTGKWSAFGGGERRT 180
           TWLPLEEPNSMNSIMMYEPPEERIHSFIGSSPIAATETIQNEKIELTGKWSAFGGGERRT
Sbjct: 121 TWLPLEEPNSMNSIMMYEPPEERIHSFIGSSPIAATETIQNEKIELTGKWSAFGGGERRT 180

Query: 181 TKQRRGRGGEVTETHVCHHYLFGGRHKANGQQGRLPLGL 220
           TKQRRGRGGEVTETHVCHHYLFGGRHKANGQQGRLPLGL
Sbjct: 181 TKQRRGRGGEVTETHVCHHYLFGGRHKANGQQGRLPLGL 219

[Close]
BLAST of Carg14810 vs. NCBI nr
Match: KAG6582583.1 (UDP-galactose/UDP-glucose transporter 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 163 KIELTGKWSAFGGGERRTTKQRRGRGGEVTETHVCHHYLFGGRHKANGQQGRLPL 218
           +IELTGKWSAFGGGERRTTKQRRGRGGEVTETHVCHHYL GGRHKANGQQGRLPL
Sbjct: 3   RIELTGKWSAFGGGERRTTKQRRGRGGEVTETHVCHHYLSGGRHKANGQQGRLPL 57

The following BLAST results are available for this feature:
BLAST of Carg14810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018967.16.9e-121100.00hypothetical protein SDJN02_20844, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582583.12.5e-2296.36UDP-galactose/UDP-glucose transporter 4, partial [Cucurbita argyrosperma subsp. ... [more]
BLAST of Carg14810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14810 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14810-RACarg14810-RAmRNA