Carg14613 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14613
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 2241320 .. 2243149 (+)
RNA-Seq ExpressionCarg14613
SyntenyCarg14613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTTCAAATTTGATCGAAGATCGAGTAATGGATCCAAGTGGTTCGACAACGGTACAGATCGTTGCACCGTTTGTGAGAAAAGCCAATTCTTGTACATTGGTACCATTCTATACTCCTTTTTACTTGAACCAGGAGATGGGAAGAATTTTGCAGAACAATAGAGAGAAGTGGTAGCATACAGAAATGATGAATATAGTTATTAAAGGTTTCTGTAGGATTCAGTGGCGGACTACTCTCAGACCCACCAGCAAAGGTTGAGGTAGAGAACCCATTTTCTTTATATTCCCGTCCCTAATTGTAACTTCATCCCATTTTTTTGCATTTTACATGCTGAATCTTATACAATTGCGTACCTTTCTGGCTTATATGAATACAATAATGTGTATCTAACTCGTTACATTAGAAAGGTTTCTGGTTATCTTTGTTTGACTGGTAGCTTCTATAATTACTAAAGCAGGTAAATGGAAGGGTGGGAAGGCACATGGAGTGGACAAAACATTTTACCATTTAACCTCCATGTAAGTTCATTTCATTTACTGAACAACAAAGGCCTTAAAAAAGGGCATCCAGACGTCAGTAAGTGCTGAAATGGCCTTGCTTGCTTGTCTTGAAAGACATAAAAGCTACCAAAAAAAAACAGGACAGTGAACCCCCATCGGAAGTAACTACATTATTAAAAAAGTTTCGTATTATGGAGATAGTGTTTCTTACTTATAAACTCATGAGAGTCTTCCTTGAGATCTCGGAGCTCTCGAACAACCTCCACTTAATCGAGGCTTAACTCTTTTTTGGAGCCTTCAAACAAAGTATACCTGACACTTGAAAATTCTATTGGCAAGACTGTGATATCACAGTAGGAGCCTTCAAACAAAGTACACCTGACACTTGAAAATTCTATTGGCAAGACTGTGATATCATAGCAGTAACCACAACCTCCGATAATAGTATTGATATTTGTTAGTAGTAACCACAACCTCCTATAATAGTATTGATATTTGTTAGGTTATGGAGATTGAGACTGCTTATATTTGTTAGTAGTAACCGCAACCTCCTATAATTGGTATTAATATTTGTTAGGTTATGGAGCCCGCTACTTATTTATAGCTTAGTTAGAGGTTATATAGTAAAGTTATATTTGGTAAATGTGTAAATAGGTATGTACAGTAAAAAGCTATATATATATATATATATATATCCCAACTTTGTACTCTTGTCTTCTTTGTATTTTTTTTTACTGTATATACTAGAAGTCATCAATACAAAACCTTTAGCTAGAGTTCTCACTGTATTTTCTACCTAAAGTCGTTAATACAGAACCTTTAGCCAGAGTTCTCCTTGCATTTTCTCTATCCTGTTCTTTTTGTTCATCTAGATCGAGTTGTTCATCTAGATCGAGTATGTGCGTTGTTGTGCGATCCTAATAATATTATCCACTTTGAGTATAAACTCTAGTAACTTTTCGGGCGTTAGGTTACTTATTTACGAGTCATGGAAGATAAATAAACAGGGTTAAAAATGTAAGAAAAAGAAAGAAGGCCCAGTCCGGCCCAATTAGAAGGTGTCCCCTACGACTGAGACACCAGTTTAAAAAGGGTCCACGTGTGGCGATTTGTCTGACAGTTCAGAGCCCCAGTTTCCCACATAGTCTGTCAGGCGCCGCTCAGCCCCCCATTCGTAGGGCTTACGTCATCCTCTTCTCGTCTAATCACCCGGCGGCTCCCTCGTTATCAAATCTCTCTCATCCGACGGCTCACATTTCACACGCTTCTAATTCCCAATATTTCTGCGTATTTATCCCGTCGTCTACCCGCCGATCACGGGTGA

mRNA sequence

ATGGCTGCTTCAAATTTGATCGAAGATCGAGTAATGGATCCAAGTGGTTCGACAACGGTACAGATCGTTGCACCGTTTGTGAGAAAAGCCAATTCTTGTACATTGGTTTCTGTAGGATTCAGTGGCGGACTACTCTCAGACCCACCAGCAAAGGTTGAGTTCAGAGCCCCAGTTTCCCACATAGTCTGTCAGGCGCCGCTCAGCCCCCCATTCGTAGGGCTTACGTCATCCTCTTCTCGTCTAATCACCCGGCGGCTCCCTCGTTATCAAATCTCTCTCATCCGACGGCTCACATTTCACACGCTTCTAATTCCCAATATTTCTGCGTATTTATCCCGTCGTCTACCCGCCGATCACGGGTGA

Coding sequence (CDS)

ATGGCTGCTTCAAATTTGATCGAAGATCGAGTAATGGATCCAAGTGGTTCGACAACGGTACAGATCGTTGCACCGTTTGTGAGAAAAGCCAATTCTTGTACATTGGTTTCTGTAGGATTCAGTGGCGGACTACTCTCAGACCCACCAGCAAAGGTTGAGTTCAGAGCCCCAGTTTCCCACATAGTCTGTCAGGCGCCGCTCAGCCCCCCATTCGTAGGGCTTACGTCATCCTCTTCTCGTCTAATCACCCGGCGGCTCCCTCGTTATCAAATCTCTCTCATCCGACGGCTCACATTTCACACGCTTCTAATTCCCAATATTTCTGCGTATTTATCCCGTCGTCTACCCGCCGATCACGGGTGA

Protein sequence

MAASNLIEDRVMDPSGSTTVQIVAPFVRKANSCTLVSVGFSGGLLSDPPAKVEFRAPVSHIVCQAPLSPPFVGLTSSSSRLITRRLPRYQISLIRRLTFHTLLIPNISAYLSRRLPADHG
Homology
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BLAST of Carg14613 vs. NCBI nr
Match: KAG7012448.1 (hypothetical protein SDJN02_25200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MAASNLIEDRVMDPSGSTTVQIVAPFVRKANSCTLVSVGFSGGLLSDPPAKVEFRAPVSH 60
           MAASNLIEDRVMDPSGSTTVQIVAPFVRKANSCTLVSVGFSGGLLSDPPAKVEFRAPVSH
Sbjct: 1   MAASNLIEDRVMDPSGSTTVQIVAPFVRKANSCTLVSVGFSGGLLSDPPAKVEFRAPVSH 60

Query: 61  IVCQAPLSPPFVGLTSSSSRLITRRLPRYQISLIRRLTFHTLLIPNISAYLSRRLPADHG 120
           IVCQAPLSPPFVGLTSSSSRLITRRLPRYQISLIRRLTFHTLLIPNISAYLSRRLPADHG
Sbjct: 61  IVCQAPLSPPFVGLTSSSSRLITRRLPRYQISLIRRLTFHTLLIPNISAYLSRRLPADHG 120

The following BLAST results are available for this feature:
BLAST of Carg14613 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012448.11.2e-58100.00hypothetical protein SDJN02_25200, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg14613 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14613 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14613 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14613-RACarg14613-RAmRNA