Carg14463 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14463
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 8467723 .. 8468083 (+)
RNA-Seq Expression	Carg14463
Synteny	Carg14463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTTTGATGCAGTTTCAACCTCCAAATCGCACAACTCATGATCCCAGCTACAAAATCAGTGGCAAAAGCACGTTATTATGTCTACTAAAAGTCTAATCAGTTCTAATCACCTCCAATTTGACACTAATAAGAATAAAGAATTGGTTAGGTAGGCTTACTTCTTGTGGCCCATAACAGTGTCCAATACTAAAACCAGGAGTAAACCAATATTGGTTCATGAACTGTTCTTTCTGGCAGGAAATCAAATCAGAATAGTTTAGTAAATGTCCTCCTCAATCGCCCCACCTTTCAGACAGCCCCACAAGCGGTGCCAAGGTTCTTAAAATCAGATGAACATGACAATTTTGATCCTTGA

mRNA sequence

ATGATTGGTTTGATGCAGTTTCAACCTCCAAATCGCACAACTCATGATCCCAGCTACAAAATCAGTGGCAAAAGCACGAAATCAAATCAGAATAGTTTAGTAAATGTCCTCCTCAATCGCCCCACCTTTCAGACAGCCCCACAAGCGGTGCCAAGGTTCTTAAAATCAGATGAACATGACAATTTTGATCCTTGA

Coding sequence (CDS)

ATGATTGGTTTGATGCAGTTTCAACCTCCAAATCGCACAACTCATGATCCCAGCTACAAAATCAGTGGCAAAAGCACGAAATCAAATCAGAATAGTTTAGTAAATGTCCTCCTCAATCGCCCCACCTTTCAGACAGCCCCACAAGCGGTGCCAAGGTTCTTAAAATCAGATGAACATGACAATTTTGATCCTTGA

Protein sequence

MIGLMQFQPPNRTTHDPSYKISGKSTKSNQNSLVNVLLNRPTFQTAPQAVPRFLKSDEHDNFDP

Homology

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BLAST of Carg14463 vs. NCBI nr
Match: KAG7012821.1 (hypothetical protein SDJN02_25574, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 3.4e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MIGLMQFQPPNRTTHDPSYKISGKSTKSNQNSLVNVLLNRPTFQTAPQAVPRFLKSDEHD 60
          MIGLMQFQPPNRTTHDPSYKISGKSTKSNQNSLVNVLLNRPTFQTAPQAVPRFLKSDEHD
Sbjct: 1  MIGLMQFQPPNRTTHDPSYKISGKSTKSNQNSLVNVLLNRPTFQTAPQAVPRFLKSDEHD 60

Query: 61 NFDP 65
          NFDP
Sbjct: 61 NFDP 64

The following BLAST results are available for this feature:

BLAST of Carg14463 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012821.1	3.4e-28	100.00	hypothetical protein SDJN02_25574, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg14463 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14463 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14463 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14463-RA	Carg14463-RA	mRNA