Carg14399 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg14399
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9789950 .. 9791223 (-)
RNA-Seq ExpressionCarg14399
SyntenyCarg14399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACGAAGTTTGGATCAATAAGACTTGCCTGGAATCACTCCCTGCTCTCTTCGCCCTCGAATCTGTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGTAAAACCCCAAACTCCTCTCCTCCGATCCGGATTATGATCTTTACCCCATCTTTGATTTCCTTCTTAATGAGGTTCGATGCCCTAGAATTCTCGTCTCCGACTTGGACCTTCAATCTCCTCCATTTCCACCGTGCATAGATTGTCGTCGAAAATGCTGAAGGTTAGTGACGGGTAGCTCACTGCAAGGTTCATAGAAATGAAATTGCAGTCGTTGACGGCTGATCGTCGAAGTGAGTTGCTTTGCTTCTTGTAAATTTGTAGTTTCTTCGGATGTGATTATTTGTGGTTTATGGCTCTTTAGAATCTTCAATCTCCGTTAAAACTCAATGGATTAGGTTGTTTATGGATGAGTATGAATATGAACCAGGGCCTTATTACAATCGAAAGCTAAGAAAAATTATGAACACTAGCGATTCCCACAACTGATGCTATGTTTCAGTGATACCAACCGATTGTGTTAAACAACACTTGGACATCTTTTTAATCTTGGGATTGACTTTGTATGCAGTATTGAGATCAGATTCTACATATCTGCAAGGACCTGTGGTTCTTAATATTATGCTAAATTGGAATCCTGGCAGCTTGGTATTGAGATAAAAATGATATTGGTATACACAAATTGACACAGCGGCTGCAGCTAAACAAGTGGCACGGATGGTTGTATGTAATTAACACATGAACTGCTGATGATTTGATGCTTCTTATAGTCTGTCTGCCACAAACACACGTGCTGCTATGTGGAAATCCTGGATGAGCATTGCTGATGTTAGGTTAAGTTGAGTTAACTTTTTCCTTCCTTTGTGCAGGAACTGTTATGGAAATGATCGTACAGCTCGATTGATAAGACCAGGCCTTCCGCACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCCCGGTCAGAACTACAGCTCGATTGACAAGACCAGGCCTTCCACCAGATTCATTTGTTAATGCAGCCATTGACTATCTAAATTGGTTGTAGGGATTCACAAGATTGTTCCCTTCTTGAATGGGATCATCAGTCAGAATGTTTGCTGTTTAAACAGAGAATACGTAGAACACACACACTCGACGCTTCCACAGTTGCCATTTGTTGATGTAATGTAGGCCCAGACTACCGTAGTTTGTTGAGCGACTTGCA

mRNA sequence

ATGGGGAACGAAGTTTGGATCAATAAGACTTGCCTGGAATCACTCCCTGCTCTCTTCGCCCTCGAATCTGTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGAACTGTTATGGAAATGATCGTACAGCTCGATTGATAAGACCAGGCCTTCCGCACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCCCGGTCAGAACTACAGCTCGATTGACAAGACCAGGCCTTCCACCAGATTCATTTGTTAATGCAGCCATTGACTATCTAAATTGGTTGTAGGGATTCACAAGATTGTTCCCTTCTTGAATGGGATCATCAGTCAGAATGTTTGCTGTTTAAACAGAGAATACGTAGAACACACACACTCGACGCTTCCACAGTTGCCATTTGTTGATGTAATGTAGGCCCAGACTACCGTAGTTTGTTGAGCGACTTGCA

Coding sequence (CDS)

ATGGGGAACGAAGTTTGGATCAATAAGACTTGCCTGGAATCACTCCCTGCTCTCTTCGCCCTCGAATCTGTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGAACTGTTATGGAAATGATCGTACAGCTCGATTGATAAGACCAGGCCTTCCGCACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCCCGGTCAGAACTACAGCTCGATTGACAAGACCAGGCCTTCCACCAGATTCATTTGTTAA

Protein sequence

MGNEVWINKTCLESLPALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLTIYIGWRDSQDCFHPGQNYSSIDKTRPSTRFIC
Homology
[Close]
BLAST of Carg14399 vs. NCBI nr
Match: KAG7032224.1 (hypothetical protein SDJN02_06267, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 7.2e-48
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MGNEVWINKTCLESLPALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLTI 60
          MGNEVWINKTCLESLPALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLTI
Sbjct: 1  MGNEVWINKTCLESLPALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLTI 60

Query: 61 YIGWRDSQDCFHPGQNYSSIDKTRPSTRFIC 92
          YIGWRDSQDCFHPGQNYSSIDKTRPSTRFIC
Sbjct: 61 YIGWRDSQDCFHPGQNYSSIDKTRPSTRFIC 91

[Close]
BLAST of Carg14399 vs. NCBI nr
Match: KAG6601442.1 (hypothetical protein SDJN03_06675, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MGNEVWINKTCLESLP-ALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLT 60
          MGNEVWINKTCLESLP ALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLT
Sbjct: 1  MGNEVWINKTCLESLPAALFALESVELSAVGRVLDMNCYGNDRTARLIRPGLPHIMQPLT 60

Query: 61 IYIGWRDSQDCFHPGQNY 78
          IYIGWRDSQDCFHPG  +
Sbjct: 61 IYIGWRDSQDCFHPGHGF 78

The following BLAST results are available for this feature:
BLAST of Carg14399 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032224.17.2e-48100.00hypothetical protein SDJN02_06267, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601442.14.8e-3694.87hypothetical protein SDJN03_06675, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg14399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg14399 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14399-RACarg14399-RAmRNA