Carg14336 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg14336
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 10115817 .. 10116256 (-)
RNA-Seq Expression	Carg14336
Synteny	Carg14336

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGCTTCTCTGCAACTCTGCTGCAACTGCACAAACACAGAGTTGGTACGTACTCTTTCAAAATCAACGATACCAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAAATGGGCAGGATCGTCGCCACACCATTGTACGGTCCCACTCCAATCCAATCCACTCTATTCATTTTCCATTTTCAGAAGCCTTCCCTCAACCCCTATGCGCCCTTAAATCGAATATCATTCTCTTTCTACTCAACTGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGTTATGGTTATGGGTACCTTTCATTTCAACCATTCGATTCCATGGTTTTCTGTTTCTCTTCTCACTGCTCAGTCAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTTCTTAAAGCAGAATCAGATTTCTGTTTCCGAAAACTGA

mRNA sequence

ATGATTGAGCTTCTCTGCAACTCTGCTGCAACTGCACAAACACAGAGTTGGTACGTACTCTTTCAAAATCAACGATACCAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAAATGGGCAGGATCGTCGCCACACCATTAAGCCTTCCCTCAACCCCTATGCGCCCTTAAATCGAATATCATTCTCTTTCTACTCAACTGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGTTATGAATCAGATTTCTGTTTCCGAAAACTGA

Coding sequence (CDS)

ATGATTGAGCTTCTCTGCAACTCTGCTGCAACTGCACAAACACAGAGTTGGTACGTACTCTTTCAAAATCAACGATACCAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAAATGGGCAGGATCGTCGCCACACCATTAAGCCTTCCCTCAACCCCTATGCGCCCTTAAATCGAATATCATTCTCTTTCTACTCAACTGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGTTATGAATCAGATTTCTGTTTCCGAAAACTGA

Protein sequence

MIELLCNSAATAQTQSWYVLFQNQRYQEQEEEEEEEENGQDRRHTIKPSLNPYAPLNRISFSFYSTAPAAAAAAAAAAAVMNQISVSEN

Homology

[Close]

BLAST of Carg14336 vs. NCBI nr
Match: KAG7032286.1 (hypothetical protein SDJN02_06330, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-36
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MIELLCNSAATAQTQSWYVLFQNQRYQEQEEEEEEEENGQDRRHTIKPSLNPYAPLNRIS 60
          MIELLCNSAATAQTQSWYVLFQNQRYQEQEEEEEEEENGQDRRHTIKPSLNPYAPLNRIS
Sbjct: 1  MIELLCNSAATAQTQSWYVLFQNQRYQEQEEEEEEEENGQDRRHTIKPSLNPYAPLNRIS 60

Query: 61 FSFYSTAPAAAAAAAAAAAVMNQISVSEN 90
          FSFYSTAPAAAAAAAAAAAVMNQISVSEN
Sbjct: 61 FSFYSTAPAAAAAAAAAAAVMNQISVSEN 89

The following BLAST results are available for this feature:

BLAST of Carg14336 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032286.1	1.2e-36	100.00	hypothetical protein SDJN02_06330, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg14336 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14336 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg14336 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14336-RA	Carg14336-RA	mRNA