Carg14286 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTATTTTTTTTAAAAAAATAATTTTGATTTGAAAACTTGCTAATGGGCCTTGGTCCAAAGCAACCTTGAGAGCCTCTAAATGAAACGGACTCGGGCTGAAGAAGGGAGGTGACCTAATCGTCCGGATCTTACATTTTTCTGCCAATCTCTGTCTAAGCTCCGATGAACGAACATGGAGGAACCCATCGGAGAGAGACAGAAATGCCGATATCAGAATTGGTGAGGGACAGACGATGGGCGGAATGAAGCGGCGCGATCAAAGTTGGGTAAGAAGCACGCAGCATTAAATTTGCAGCAATCAATAGGGTTTAATGCTTGTCTTGATTGTTAACATGCTTAGTTATTGGGTTTTGGGTATTCTAAGGAAGGAAGGAAGGTCTGACTTGGAAACGATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACACAAGGTATCCTTTTCTTGTCTTAAAGTGTCGAAGCTTTGAAGTTTGAAATCAAAGCAAGGTTTTACCCACATCTCCCTCTTTCCCTCATTTTTTAGATGTCTGGACACGGCCTTTCCACAAGTATATCTCTTCTTTTCTCAACATCATCTGGCTGCTGCTCTGTTCTGTCGAGTTGGAAGGAGAAACAATGTGGCAACAACAGCCCAAAAGGAACTCGTTTAAAGAATCTGTCAAGGCTGTTGAAGCTGATATACGACGTGCAAATGCCTTGTAAGATCTTCTATTCGGGTTCTATTCTCTGTCAGATATGTTCAAATCCCTTGTTAATAGATATTGTCTTCTTTAGACTTTCTCTTTAAAGCTTTCTCCTAATAGATATGATCTTCCTTATATTTTCACTTTAGAGCTTTCTCCTAGTAGATATTGTCTTCTTTAGTTGGGAGAAGTTTTCATATCCTTATAAGGAATGAATTTCATAAATTCCACGTCAGAATAATACCCTACTTTATGTTCCAGAACCCAAAAGATCTTCATGGTTCTTAACTTCTGATACCCGAGCCCTGTTGTTCCACTACTTGAACTACGACTTCTCATGGGTTTGGTTTTGCATTTGTAGGGCAGCTATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTGCAATACAGCCCATTTGCTCTCTTTTTTCTCCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGCTTCCCTCAACTCTTGCAGCATATTCACAACCTGAAATCTAA ATTATTTTTTTTAAAAAAATAATTTTGATTTGAAAACTTGCTAATGGGCCTTGGTCCAAAGCAACCTTGAGAGCCTCTAAATGAAACGGACTCGGGCTGAAGAAGGGAGGTGACCTAATCGTCCGGATCTTACATTTTTCTGCCAATCTCTGTCTAAGCTCCGATGAACGAACATGGAGGAACCCATCGGAGAGAGACAGAAATGCCGATATCAGAATTGGTGAGGGACAGACGATGGGCGGAATGAAGCGGCGCGATCAAAGTTGGGAAGGAAGGTCTGACTTGGAAACGATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACACAAGATGTCTGGACACGGCCTTTCCACAAGTATATCTCTTCTTTTCTCAACATCATCTGGCTGCTGCTCTGTTCTGTCGAGTTGGAAGGAGAAACAATGTGGCAACAACAGCCCAAAAGGAACTCGTTTAAAGAATCTGGCAGCTATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTGCAATACAGCCCATTTGCTCTCTTTTTTCTCCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGCTTCCCTCAACTCTTGCAGCATATTCACAACCTGAAATCTAA ATGGGCGGAATGAAGCGGCGCGATCAAAGTTGGGAAGGAAGGTCTGACTTGGAAACGATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACACAAGATGTCTGGACACGGCCTTTCCACAAGTATATCTCTTCTTTTCTCAACATCATCTGGCTGCTGCTCTGTTCTGTCGAGTTGGAAGGAGAAACAATGTGGCAACAACAGCCCAAAAGGAACTCGTTTAAAGAATCTGGCAGCTATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTGCAATACAGCCCATTTGCTCTCTTTTTTCTCCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGCTTCCCTCAACTCTTGCAGCATATTCACAACCTGAAATCTAA MGGMKRRDQSWEGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKVLPSTLAAYSQPEI Homology
BLAST of Carg14286 vs. NCBI nr
Match: KAG7032335.1 (hypothetical protein SDJN02_06380 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 307.0 bits (785), Expect = 8.8e-80 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
BLAST of Carg14286 vs. NCBI nr
Match: XP_022998299.1 (uncharacterized protein LOC111492969 isoform X2 [Cucurbita maxima]) HSP 1 Score: 171.4 bits (433), Expect = 5.8e-39 Identity = 93/138 (67.39%), Postives = 100/138 (72.46%), Query Frame = 0
BLAST of Carg14286 vs. NCBI nr
Match: XP_022998292.1 (uncharacterized protein LOC111492969 isoform X1 [Cucurbita maxima]) HSP 1 Score: 171.4 bits (433), Expect = 5.8e-39 Identity = 93/138 (67.39%), Postives = 100/138 (72.46%), Query Frame = 0
BLAST of Carg14286 vs. NCBI nr
Match: KAG6601571.1 (E3 ubiquitin-protein ligase AIRP2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 144.8 bits (364), Expect = 5.8e-31 Identity = 75/108 (69.44%), Postives = 83/108 (76.85%), Query Frame = 0
BLAST of Carg14286 vs. NCBI nr
Match: XP_022956579.1 (uncharacterized protein LOC111458275 [Cucurbita moschata] >XP_022956580.1 uncharacterized protein LOC111458275 [Cucurbita moschata] >XP_022956581.1 uncharacterized protein LOC111458275 [Cucurbita moschata]) HSP 1 Score: 125.6 bits (314), Expect = 3.6e-25 Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of Carg14286 vs. ExPASy TrEMBL
Match: A0A6J1K7J3 (uncharacterized protein LOC111492969 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.8e-39 Identity = 93/138 (67.39%), Postives = 100/138 (72.46%), Query Frame = 0
BLAST of Carg14286 vs. ExPASy TrEMBL
Match: A0A6J1KDZ0 (uncharacterized protein LOC111492969 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.8e-39 Identity = 93/138 (67.39%), Postives = 100/138 (72.46%), Query Frame = 0
BLAST of Carg14286 vs. ExPASy TrEMBL
Match: A0A6J1GWY5 (uncharacterized protein LOC111458275 OS=Cucurbita moschata OX=3662 GN=LOC111458275 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25 Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0
BLAST of Carg14286 vs. ExPASy TrEMBL
Match: A0A5A7SXP9 (Peroxisome biogenesis factor 10-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001870 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20 Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Carg14286 vs. ExPASy TrEMBL
Match: A0A1S3BDT3 (peroxisome biogenesis factor 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488931 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20 Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Carg14286 vs. TAIR 10
Match: AT1G24440.1 (RING/U-box superfamily protein ) HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06 Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0
BLAST of Carg14286 vs. TAIR 10
Match: AT5G58787.1 (RING/U-box superfamily protein ) HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05 Identity = 24/54 (44.44%), Postives = 31/54 (57.41%), Query Frame = 0
BLAST of Carg14286 vs. TAIR 10
Match: AT5G58787.2 (RING/U-box superfamily protein ) HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05 Identity = 24/54 (44.44%), Postives = 31/54 (57.41%), Query Frame = 0
BLAST of Carg14286 vs. TAIR 10
Match: AT1G13195.1 (RING/U-box superfamily protein ) HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04 Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of Carg14286 vs. TAIR 10
Match: AT1G13195.2 (RING/U-box superfamily protein ) HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04 Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|